mRNA_P-fluviatile_contig77.14149.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig77.14149.1
Unique NamemRNA_P-fluviatile_contig77.14149.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig77.14149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig77contigP-fluviatile_contig77:253679..254164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig77.14149.1prot_P-fluviatile_contig77.14149.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig77 253762..254073 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817197.3619692-UTR-P-fluviatile_contig77:253678..2537611622817197.3619692-UTR-P-fluviatile_contig77:253678..253761Porterinema fluviatile SAG_2381UTRP-fluviatile_contig77 253679..253761 +
1693571473.6698546-UTR-P-fluviatile_contig77:253678..2537611693571473.6698546-UTR-P-fluviatile_contig77:253678..253761Porterinema fluviatile SAG_2381UTRP-fluviatile_contig77 253679..253761 +
1622817197.381777-UTR-P-fluviatile_contig77:254073..2541641622817197.381777-UTR-P-fluviatile_contig77:254073..254164Porterinema fluviatile SAG_2381UTRP-fluviatile_contig77 254074..254164 +
1693571473.7000659-UTR-P-fluviatile_contig77:254073..2541641693571473.7000659-UTR-P-fluviatile_contig77:254073..254164Porterinema fluviatile SAG_2381UTRP-fluviatile_contig77 254074..254164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817197.3720422-CDS-P-fluviatile_contig77:253761..2540731622817197.3720422-CDS-P-fluviatile_contig77:253761..254073Porterinema fluviatile SAG_2381CDSP-fluviatile_contig77 253762..254073 +
1693571473.679606-CDS-P-fluviatile_contig77:253761..2540731693571473.679606-CDS-P-fluviatile_contig77:253761..254073Porterinema fluviatile SAG_2381CDSP-fluviatile_contig77 253762..254073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig77.14149.1

>prot_P-fluviatile_contig77.14149.1 ID=prot_P-fluviatile_contig77.14149.1|Name=mRNA_P-fluviatile_contig77.14149.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=104bp
MTEHGRDTCPRGYHQTFAVDVLIMRTSICFLFALFRERISRAGLSNSHFS
GSCGHNTMYHILSHGDRCGGRSFWLLAGPLPHSSKPTEQMEAREWGTLAF
ATR*
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mRNA from alignment at P-fluviatile_contig77:253679..254164+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig77.14149.1 ID=mRNA_P-fluviatile_contig77.14149.1|Name=mRNA_P-fluviatile_contig77.14149.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=486bp|location=Sequence derived from alignment at P-fluviatile_contig77:253679..254164+ (Porterinema fluviatile SAG_2381)
GGGGGAAGAGTGCGCGAAGGCTTATCCTCATCGTTGCTTGCCCCGGGGTC
GTTTTTGGCTATCAAACATGCATTCCTTGCGACATGACAGAGCACGGTCG
CGACACCTGTCCCAGGGGGTATCACCAAACATTCGCGGTTGATGTTCTCA
TTATGCGTACTTCAATTTGCTTTTTATTCGCGCTGTTTCGCGAGAGGATC
TCTCGTGCTGGCCTCTCAAACTCTCATTTTTCTGGATCTTGTGGCCACAA
CACCATGTATCACATATTGTCCCACGGCGATCGATGCGGAGGAAGGAGCT
TTTGGCTGCTTGCCGGGCCCCTCCCACACAGCAGTAAGCCAACCGAACAG
ATGGAGGCAAGGGAATGGGGCACGCTCGCGTTTGCCACACGTTAGCCGTG
GGCTCTTCACGTTGGGGCGGTAGGCTCTCTCAGCCTCTGCGCGAGTCCTC
GCGGCCCCGCCGAAGGGGCGGGGGGCAGGAACAGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig77:253679..254164+

>mRNA_P-fluviatile_contig77.14149.1 ID=mRNA_P-fluviatile_contig77.14149.1|Name=mRNA_P-fluviatile_contig77.14149.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=624bp|location=Sequence derived from alignment at P-fluviatile_contig77:253679..254164+ (Porterinema fluviatile SAG_2381)
ATGACAGAGCACGGTCGCGACACCTGTCCCAGGGGGTATCACCAAACATT
CGCGGTTGATGTTCTCATTATGCGTACTTCAATTTGCTTTTTATTCGCGC
TGTTTCGCGAGAGGATCTCTCGTGCTGGCCTCTCAAACTCTCATTTTTCT
GGATCTTGTGGCCACAACACCATGTATCACATATTGTCCCACGGCGATCG
ATGCGGAGGAAGGAGCTTTTGGCTGCTTGCCGGGCCCCTCCCACACAGCA
GTAAGCCAACCGAACAGATGGAGGCAAGGGAATGGGGCACGCTCGCGTTT
GCCACACGTTAGATGACAGAGCACGGTCGCGACACCTGTCCCAGGGGGTA
TCACCAAACATTCGCGGTTGATGTTCTCATTATGCGTACTTCAATTTGCT
TTTTATTCGCGCTGTTTCGCGAGAGGATCTCTCGTGCTGGCCTCTCAAAC
TCTCATTTTTCTGGATCTTGTGGCCACAACACCATGTATCACATATTGTC
CCACGGCGATCGATGCGGAGGAAGGAGCTTTTGGCTGCTTGCCGGGCCCC
TCCCACACAGCAGTAAGCCAACCGAACAGATGGAGGCAAGGGAATGGGGC
ACGCTCGCGTTTGCCACACGTTAG
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