mRNA_P-fluviatile_contig77.14125.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig77.14125.1
Unique NamemRNA_P-fluviatile_contig77.14125.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig77.14125.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 2.570e-44
Identity = 104/140 (74.29%), Postives = 109/140 (77.86%), Query Frame = 1 
Query:   22 ITSLSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQDXXXXXXXXXXXXXXETKKVAKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEDEKEQLRRXXXXXXXXXXXXX--ELLLKKEDRLSRIEQLRANNAPAGS 435
            +TSLSAMSEGDEEEGGGDHDAREAAD  PAADEIRAVQD        X     ET +V KKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKE++      XXXXXXXXX      ELLLKKEDR SRIEQLRANNAPA +
Sbjct:    1 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQXXXXXXXXXXXXXXXRELLLNELLLKKEDRFSRIEQLRANNAPAAN 140
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BLAST of mRNA_P-fluviatile_contig77.14125.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.020e-43
Identity = 110/157 (70.06%), Postives = 113/157 (71.97%), Query Frame = 1 
Query:    1 MFYPVRGITSLSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQDXXXXXXXXXXXXXXETKKVAKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEDEKEQLRRXXXXXXXXXXXXX--------------ELLLKKEDRLSRIEQLRANNAPA 429
            MFYPVRG+T LSAMSEGDEEEGGGDH AREAAD  PAADEIRAVQD              ET +V KKIDDIEAAIAGG+RYLGMTDPEALLKQL       EQLRRXXXXXXXXXXXXX              ELLLK EDRLSR EQ RANNAPA
Sbjct:    1 MFYPVRGMTGLSAMSEGDEEEGGGDHHAREAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQL-------EQLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXELLLKTEDRLSRSEQFRANNAPA 150
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BLAST of mRNA_P-fluviatile_contig77.14125.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 2.170e-43
Identity = 118/146 (80.82%), Postives = 125/146 (85.62%), Query Frame = 1 
Query:   22 ITSLSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQDXXXXXXXXXXXXXX-------ETKKVAKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEDEKEQLRRXXXXXXXXXXXXXELLLKKEDRLSRIEQLRANNAPAGSV 438
            +TS SAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQ XXXXXXXXXXXXXX       ET +V KKID IEAAIAGGS+YLGMTDPEALLKQLGRKE++  +     XXXXXXXXXXX +LLKKEDRLSRIEQLRANNAPAG V
Sbjct:    1 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXILLKKEDRLSRIEQLRANNAPAGVV 146
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BLAST of mRNA_P-fluviatile_contig77.14125.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 7.650e-34
Identity = 110/146 (75.34%), Postives = 117/146 (80.14%), Query Frame = 1 
Query:    1 MFYPVRGITSLSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQDXXXXXXXXXXXXXXETKKVAKKIDDIEAA-IAGGSRYLGMTDPEALLKQLGRKEDEKEQLRRXXXXXXXXXXXXXELLLKKEDRLSRIEQLRANNAPAGS 435
            M YPVRGITSLSA+SEG+EE+GGGDHD REAA GSPAADEIRAVQ XXXXXXXXXXXXXX       KIDD+EAA IAGGS YLGMTDPEALLK       EKE+L  XXXXXXXXXXXXX  +L KE RL  IEQ RANNAPAG+
Sbjct:    1 MVYPVRGITSLSALSEGNEEDGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXKIDDVEAATIAGGSGYLGMTDPEALLK-------EKERLGXXXXXXXXXXXXXXXQVLVKEKRLFSIEQRRANNAPAGT 139
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BLAST of mRNA_P-fluviatile_contig77.14125.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 8.430e-31
Identity = 83/100 (83.00%), Postives = 86/100 (86.00%), Query Frame = 1 
Query:    4 FYPVRGITSLSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQDXXXXXXXXXXXXXXETKKVAKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEDE 303
            FYPV G+TSLSAMSEG EEEGGGDH AREAADGSPAADEIRAVQ XXXXXXXXXXXXXX         D IEAAIAGGSRYLGMTDPEALLKQLGRKE++
Sbjct:   70 FYPVPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXTDGIEAAIAGGSRYLGMTDPEALLKQLGRKEEQ 169
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig77.14125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G8Q1_ECTSI2.570e-4474.29Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D8LPP1_ECTSI1.020e-4370.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G515_ECTSI2.170e-4380.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3Q8_ECTSI7.650e-3475.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FM56_ECTSI8.430e-3183.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig77contigP-fluviatile_contig77:19339..20298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size960
Cds size618
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817197.6333182-CDS-P-fluviatile_contig77:19338..199561622817197.6333182-CDS-P-fluviatile_contig77:19338..19956Porterinema fluviatile SAG_2381CDSP-fluviatile_contig77 19339..19956 +
1693571473.8975477-CDS-P-fluviatile_contig77:19338..199561693571473.8975477-CDS-P-fluviatile_contig77:19338..19956Porterinema fluviatile SAG_2381CDSP-fluviatile_contig77 19339..19956 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817197.6476266-UTR-P-fluviatile_contig77:19956..202981622817197.6476266-UTR-P-fluviatile_contig77:19956..20298Porterinema fluviatile SAG_2381UTRP-fluviatile_contig77 19957..20298 +
1693571473.9074905-UTR-P-fluviatile_contig77:19956..202981693571473.9074905-UTR-P-fluviatile_contig77:19956..20298Porterinema fluviatile SAG_2381UTRP-fluviatile_contig77 19957..20298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig77.14125.1prot_P-fluviatile_contig77.14125.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig77 19339..19956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig77.14125.1

>prot_P-fluviatile_contig77.14125.1 ID=prot_P-fluviatile_contig77.14125.1|Name=mRNA_P-fluviatile_contig77.14125.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=206bp
MFYPVRGITSLSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQDEIRS
VERKIERAEEETKKVAKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKED
EKEQLRREKEQLRREKEQLRELLLKKEDRLSRIEQLRANNAPAGSVPLCV
KIHSSVQTRRGCRSPAMKADHLKKVEEFLVAGTFVALSFCTGNSPPLLKQ
PAGVW*
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mRNA from alignment at P-fluviatile_contig77:19339..20298+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig77.14125.1 ID=mRNA_P-fluviatile_contig77.14125.1|Name=mRNA_P-fluviatile_contig77.14125.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=960bp|location=Sequence derived from alignment at P-fluviatile_contig77:19339..20298+ (Porterinema fluviatile SAG_2381)
ATGTTTTACCCGGTGCGAGGGATCACGAGCTTGAGCGCGATGAGCGAGGG
CGACGAGGAGGAGGGGGGCGGCGATCATGATGCGCGAGAAGCTGCCGATG
GCAGTCCGGCGGCGGACGAGATCCGTGCGGTCCAGGATGAGATCCGTAGT
GTAGAGCGCAAGATCGAGCGTGCAGAGGAGGAGACAAAAAAGGTAGCCAA
GAAGATTGATGATATTGAGGCTGCTATTGCTGGGGGCTCCAGGTACCTCG
GAATGACCGACCCCGAAGCCCTGTTGAAGCAACTAGGCAGGAAGGAGGAC
GAGAAGGAGCAACTACGAAGGGAGAAGGAGCAACTACGAAGGGAGAAGGA
GCAGCTCCGCGAGCTCCTTTTGAAGAAGGAGGACCGGCTCTCCAGGATTG
AGCAGCTCCGTGCCAACAACGCCCCCGCAGGTAGCGTCCCATTATGTGTG
AAAATTCACAGCAGTGTACAGACTAGGAGGGGATGCAGGTCGCCCGCAAT
GAAAGCAGACCATTTGAAAAAAGTCGAGGAGTTCCTCGTGGCCGGTACAT
TTGTAGCGCTGTCGTTTTGCACGGGCAATTCGCCTCCTCTTTTAAAGCAA
CCTGCTGGCGTTTGGTAGATCTACGCTCCTCAGCAACTACAGTACGTGCG
ACGTTTTCTTGTCCCTCCCACCTGGCTGCAGAACGCTGTGACAGTACTCC
TACATTATTCCCTCCCATTATTGGATTTTGTTGTCTGCCTCACTGGCCCC
CATCCTCCACCACGACTAGCTAGACGACCCAACCAGGGTCACACGGGAGG
GGGGGAGGTGCACCCCCTCCTGCGGTGCCTGCCTGTTGATTTTTGATCGC
GAGCAGGGTTCAGTACTCCCCACCGTCGTCAACAACGAAGTCCAGATACT
TACTAACGAATCGCTTTCAATTTCCAGGAAGGAATGTGAGAAAAACTCGC
TCGTCGGGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig77:19339..20298+

>mRNA_P-fluviatile_contig77.14125.1 ID=mRNA_P-fluviatile_contig77.14125.1|Name=mRNA_P-fluviatile_contig77.14125.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1236bp|location=Sequence derived from alignment at P-fluviatile_contig77:19339..20298+ (Porterinema fluviatile SAG_2381)
ATGTTTTACCCGGTGCGAGGGATCACGAGCTTGAGCGCGATGAGCGAGGG
CGACGAGGAGGAGGGGGGCGGCGATCATGATGCGCGAGAAGCTGCCGATG
GCAGTCCGGCGGCGGACGAGATCCGTGCGGTCCAGGATGAGATCCGTAGT
GTAGAGCGCAAGATCGAGCGTGCAGAGGAGGAGACAAAAAAGGTAGCCAA
GAAGATTGATGATATTGAGGCTGCTATTGCTGGGGGCTCCAGGTACCTCG
GAATGACCGACCCCGAAGCCCTGTTGAAGCAACTAGGCAGGAAGGAGGAC
GAGAAGGAGCAACTACGAAGGGAGAAGGAGCAACTACGAAGGGAGAAGGA
GCAGCTCCGCGAGCTCCTTTTGAAGAAGGAGGACCGGCTCTCCAGGATTG
AGCAGCTCCGTGCCAACAACGCCCCCGCAGGTAGCGTCCCATTATGTGTG
AAAATTCACAGCAGTGTACAGACTAGGAGGGGATGCAGGTCGCCCGCAAT
GAAAGCAGACCATTTGAAAAAAGTCGAGGAGTTCCTCGTGGCCGGTACAT
TTGTAGCGCTGTCGTTTTGCACGGGCAATTCGCCTCCTCTTTTAAAGCAA
CCTGCTGGCGTTTGGTAGATGTTTTACCCGGTGCGAGGGATCACGAGCTT
GAGCGCGATGAGCGAGGGCGACGAGGAGGAGGGGGGCGGCGATCATGATG
CGCGAGAAGCTGCCGATGGCAGTCCGGCGGCGGACGAGATCCGTGCGGTC
CAGGATGAGATCCGTAGTGTAGAGCGCAAGATCGAGCGTGCAGAGGAGGA
GACAAAAAAGGTAGCCAAGAAGATTGATGATATTGAGGCTGCTATTGCTG
GGGGCTCCAGGTACCTCGGAATGACCGACCCCGAAGCCCTGTTGAAGCAA
CTAGGCAGGAAGGAGGACGAGAAGGAGCAACTACGAAGGGAGAAGGAGCA
ACTACGAAGGGAGAAGGAGCAGCTCCGCGAGCTCCTTTTGAAGAAGGAGG
ACCGGCTCTCCAGGATTGAGCAGCTCCGTGCCAACAACGCCCCCGCAGGT
AGCGTCCCATTATGTGTGAAAATTCACAGCAGTGTACAGACTAGGAGGGG
ATGCAGGTCGCCCGCAATGAAAGCAGACCATTTGAAAAAAGTCGAGGAGT
TCCTCGTGGCCGGTACATTTGTAGCGCTGTCGTTTTGCACGGGCAATTCG
CCTCCTCTTTTAAAGCAACCTGCTGGCGTTTGGTAG
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