mRNA_P-fluviatile_contig76.14121.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig76.14121.1
Unique NamemRNA_P-fluviatile_contig76.14121.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig76.14121.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 7.110e-44
Identity = 81/127 (63.78%), Postives = 100/127 (78.74%), Query Frame = 2 
Query:  179 LKPCHKTINGIGGVICEV-------------------ELQNILSTPNLGYNLLSPSAEFDGKSRNGLGGPNNGVMTAFDGHVTFQNFDGMLVATACRVGDNSVGSLLAALTPSNPKHETSIDVNDFH 502
            LKPCHK++NGIGGV CEV                   EL+N+L +PNLGYNL SPSAEFDG+S NGLGGP +GVMTAF+G VTFQNFDGML+A+A R+G+ SVG++LAALTP+NPKHET++D+N+FH
Sbjct:   11 LKPCHKSVNGIGGVSCEVAFSGTLELVFVTADSEFSVELKNVLYSPNLGYNLFSPSAEFDGESWNGLGGP-DGVMTAFNGQVTFQNFDGMLIASAYRLGEASVGTVLAALTPANPKHETTMDINEFH 136
[Close]
BLAST of mRNA_P-fluviatile_contig76.14121.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.560e-43
Identity = 82/127 (64.57%), Postives = 99/127 (77.95%), Query Frame = 2 
Query:  179 LKPCHKTINGIGGVICE-------------------VELQNILSTPNLGYNLLSPSAEFDGKSRNGLGGPNNGVMTAFDGHVTFQNFDGMLVATACRVGDNSVGSLLAALTPSNPKHETSIDVNDFH 502
            LKPCHK++NGIGGV CE                   VEL+N+L +PNLGYNL SPSAEFDG+S NGLGGP +GVMTAF G VTFQNFDGML+A+A R+G+ SVG++LAALTPSNPKH+T++DVN+FH
Sbjct:  252 LKPCHKSVNGIGGVSCEISFSGTLELVFVTADSEFSVELKNVLYSPNLGYNLFSPSAEFDGESWNGLGGP-DGVMTAFKGQVTFQNFDGMLIASAYRLGEASVGTVLAALTPSNPKHKTTMDVNEFH 377
[Close]
BLAST of mRNA_P-fluviatile_contig76.14121.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 2.110e-43
Identity = 81/127 (63.78%), Postives = 99/127 (77.95%), Query Frame = 2 
Query:  179 LKPCHKTINGIGGVICEV-------------------ELQNILSTPNLGYNLLSPSAEFDGKSRNGLGGPNNGVMTAFDGHVTFQNFDGMLVATACRVGDNSVGSLLAALTPSNPKHETSIDVNDFH 502
            LKPCHK++NGIGGV CE+                   EL+N+L +PNLGYNL SPSAEFDG+S NGLGGP +GVMTAF G VTFQNFDGML+A+A R+G+ SVG++LAALTPSNPKH+T++DVN+FH
Sbjct:  545 LKPCHKSVNGIGGVSCEISFSGTLELVFVTADSEFSMELKNVLYSPNLGYNLFSPSAEFDGESWNGLGGP-DGVMTAFKGQVTFQNFDGMLIASAYRLGEASVGTVLAALTPSNPKHKTTMDVNEFH 670
[Close]
BLAST of mRNA_P-fluviatile_contig76.14121.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 8.650e-42
Identity = 82/127 (64.57%), Postives = 92/127 (72.44%), Query Frame = 2 
Query:  179 LKPCHKTINGIGGVICEV-------------------ELQNILSTPNLGYNLLSPSAEFDGKSRNGLGGPNNGVMTAFDGHVTFQNFDGMLVATACRVGDNSVGSLLAALTPSNPKHETSIDVNDFH 502
            +KPCHK + GIGGV CEV                   EL+N+L  P LGYNL SPSAEFDG+S NGLGGP +GVMTAF GHVTFQNFDGMLVATA R+G NS+GS+LAALTPSNPK    +DVNDFH
Sbjct:  327 VKPCHKKVKGIGGVTCEVALSGTLEVAFVSADSEFSAELKNVLYAPKLGYNLFSPSAEFDGESWNGLGGP-DGVMTAFHGHVTFQNFDGMLVATAYRLGHNSIGSVLAALTPSNPKRVKIMDVNDFH 452
[Close]
BLAST of mRNA_P-fluviatile_contig76.14121.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 1.550e-41
Identity = 77/127 (60.63%), Postives = 97/127 (76.38%), Query Frame = 2 
Query:  179 LKPCHKTINGIGGVICEV-------------------ELQNILSTPNLGYNLLSPSAEFDGKSRNGLGGPNNGVMTAFDGHVTFQNFDGMLVATACRVGDNSVGSLLAALTPSNPKHETSIDVNDFH 502
            LKPCHK++NGIG V CEV                   EL+N+L + NLGYN+ SPSAEFDG+S NG GGP +GVMTAF+G VTFQNFDGML+A+A R+G+ SVG++LAALTP+NPKHET++D+N+FH
Sbjct:  133 LKPCHKSVNGIGSVSCEVAFSGTLELVFVTADSEFSVELKNVLYSQNLGYNIFSPSAEFDGESWNGPGGP-DGVMTAFNGQVTFQNFDGMLIASAYRLGEASVGTVLAALTPANPKHETTMDINEFH 258
[Close]
BLAST of mRNA_P-fluviatile_contig76.14121.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 5.040e-41
Identity = 79/127 (62.20%), Postives = 94/127 (74.02%), Query Frame = 2 
Query:  179 LKPCHKTINGIGGVICE-------------------VELQNILSTPNLGYNLLSPSAEFDGKSRNGLGGPNNGVMTAFDGHVTFQNFDGMLVATACRVGDNSVGSLLAALTPSNPKHETSIDVNDFH 502
            LKPCHK + GIGGV CE                   VEL+N+L +PNLGYNL SPSAEFDG+S N LGGP +GVMTAF+GHVTFQN DGML++ A R+ +N VGS+LAALTPSNPKHE+ +DVN+FH
Sbjct:  451 LKPCHKNVKGIGGVTCEIEFSGTLELVFVTADSQFPVELENVLYSPNLGYNLFSPSAEFDGESWNYLGGP-DGVMTAFNGHVTFQNLDGMLISPAYRLENNCVGSVLAALTPSNPKHESKMDVNEFH 576
[Close]
BLAST of mRNA_P-fluviatile_contig76.14121.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.930e-40
Identity = 80/127 (62.99%), Postives = 90/127 (70.87%), Query Frame = 2 
Query:  179 LKPCHKTINGIGGVICEV-------------------ELQNILSTPNLGYNLLSPSAEFDGKSRNGLGGPNNGVMTAFDGHVTFQNFDGMLVATACRVGDNSVGSLLAALTPSNPKHETSIDVNDFH 502
            + PCH  + GIGGV CEV                   EL+N+L  P LGYNL SPSAEFDG+S NGLGGP +GVMTAF GHVTFQNFDGMLVATA R+G NS+GS+LAALTPSNPK    +DVNDFH
Sbjct:  272 VNPCHNKVKGIGGVTCEVALSGTLEVAFVSADSEFSAELKNVLYAPKLGYNLFSPSAEFDGESWNGLGGP-DGVMTAFHGHVTFQNFDGMLVATAYRLGHNSIGSVLAALTPSNPKRVKIMDVNDFH 397
[Close]
BLAST of mRNA_P-fluviatile_contig76.14121.1 vs. uniprot
Match: A0A6H5KAX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAX9_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.790e-28
Identity = 63/103 (61.17%), Postives = 71/103 (68.93%), Query Frame = 2 
Query:  179 LKPCHKTINGIGGVICEV-------------------ELQNILSTPNLGYNLLSPSAEFDGKSRNGLGGPNNGVMTAFDGHVTFQNFDGMLVATACRVGDNSV 430
            +KPCHK + GIGGV CEV                   EL+N+L  P LGYNL SPSAEFDG+S NGLGGP +GVMTAF G VTFQNFDGMLVATA R+G NS+
Sbjct:  400 VKPCHKKVKGIGGVTCEVALSGTLEVAFVSADSEFSAELKNVLYAPKLGYNLFSPSAEFDGESWNGLGGP-DGVMTAFHGQVTFQNFDGMLVATAYRLGHNSI 501
[Close]
BLAST of mRNA_P-fluviatile_contig76.14121.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 5.330e-27
Identity = 60/120 (50.00%), Postives = 84/120 (70.00%), Query Frame = 2 
Query:  143 EERLVCGRLVWMLKPCHKTINGIGGVICEVELQNILSTPNLGYNLLSPSAEFDGKSRNGLGGPNNGVMTAFDGHVTFQNFDGMLVATACRVGDNSVGSLLAALTPSNPKHETSIDVNDFH 502
            ++R VC  ++  L P +KT+  I  V C  +            + +    +FDG+S NGLGGP +GVMTAF+G VTFQNFDGML+A+A R+G+ SVG++LAALTP+NPKHET++D+N+FH
Sbjct:   84 DDREVCNLMLEGLSPEYKTLREILVVFCSND-----------PSFIETKVQFDGESWNGLGGP-DGVMTAFNGQVTFQNFDGMLIASAYRLGEASVGTVLAALTPANPKHETTMDINEFH 191
[Close]
BLAST of mRNA_P-fluviatile_contig76.14121.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 7.650e-8
Identity = 25/38 (65.79%), Postives = 36/38 (94.74%), Query Frame = 2 
Query:  389 MLVATACRVGDNSVGSLLAALTPSNPKHETSIDVNDFH 502
            ML+A+A R+G+ SVG++LAALTP+NPKHET++D+N+FH
Sbjct:    1 MLIASAYRLGEASVGTVLAALTPANPKHETTMDINEFH 38
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig76.14121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5L3Y0_9PHAE7.110e-4463.78Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KZH7_9PHAE1.560e-4364.57Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBA7_9PHAE2.110e-4363.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K622_9PHAE8.650e-4264.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV76_9PHAE1.550e-4160.63Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K2M6_9PHAE5.040e-4162.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE1.930e-4062.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAX9_9PHAE1.790e-2861.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL9_9PHAE5.330e-2750.00Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KVR5_9PHAE7.650e-865.79Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig76contigP-fluviatile_contig76:541551..542052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size502
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817190.9392326-UTR-P-fluviatile_contig76:541550..5417251622817190.9392326-UTR-P-fluviatile_contig76:541550..541725Porterinema fluviatile SAG_2381UTRP-fluviatile_contig76 541551..541725 +
1693571455.14657-UTR-P-fluviatile_contig76:541550..5417251693571455.14657-UTR-P-fluviatile_contig76:541550..541725Porterinema fluviatile SAG_2381UTRP-fluviatile_contig76 541551..541725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817190.9512985-CDS-P-fluviatile_contig76:541725..5420521622817190.9512985-CDS-P-fluviatile_contig76:541725..542052Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 541726..542052 +
1693571455.1552238-CDS-P-fluviatile_contig76:541725..5420521693571455.1552238-CDS-P-fluviatile_contig76:541725..542052Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 541726..542052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig76.14121.1prot_P-fluviatile_contig76.14121.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig76 541726..542052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig76.14121.1

>prot_P-fluviatile_contig76.14121.1 ID=prot_P-fluviatile_contig76.14121.1|Name=mRNA_P-fluviatile_contig76.14121.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=109bp
MLKPCHKTINGIGGVICEVELQNILSTPNLGYNLLSPSAEFDGKSRNGLG
GPNNGVMTAFDGHVTFQNFDGMLVATACRVGDNSVGSLLAALTPSNPKHE
TSIDVNDFH
back to top

mRNA from alignment at P-fluviatile_contig76:541551..542052+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig76.14121.1 ID=mRNA_P-fluviatile_contig76.14121.1|Name=mRNA_P-fluviatile_contig76.14121.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=502bp|location=Sequence derived from alignment at P-fluviatile_contig76:541551..542052+ (Porterinema fluviatile SAG_2381)
GAACGGTTAGAAATCTGACTTGGTCTTGCTCTCTCAAACCAACTTGAAAA
ACTCGTTTGATCTAACTTGTGTGGCATTTTACGATGCTGTGCTGCGGGAA
TGCTCGTTCAGTGATGATGCTGTCCGCAAATACTCTTGTTGTGAGGAAAG
GTTGGTGTGTGGAAGATTGGTATGGATGTTGAAGCCTTGCCACAAGACTA
TAAATGGGATTGGTGGCGTGATTTGTGAGGTAGAGTTGCAGAATATATTG
TCCACTCCCAACTTAGGGTACAACCTCTTGTCTCCCAGCGCAGAGTTTGA
TGGCAAGTCACGGAATGGCCTTGGTGGTCCTAATAATGGTGTGATGACTG
CTTTCGATGGACATGTTACTTTTCAGAACTTCGATGGCATGCTAGTTGCA
ACTGCGTGTCGTGTAGGAGATAACTCTGTCGGTTCGCTGTTGGCTGCCCT
CACTCCTTCAAACCCCAAGCACGAAACGAGTATCGACGTAAACGACTTTC
AT
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig76:541551..542052+

>mRNA_P-fluviatile_contig76.14121.1 ID=mRNA_P-fluviatile_contig76.14121.1|Name=mRNA_P-fluviatile_contig76.14121.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=654bp|location=Sequence derived from alignment at P-fluviatile_contig76:541551..542052+ (Porterinema fluviatile SAG_2381)
ATGTTGAAGCCTTGCCACAAGACTATAAATGGGATTGGTGGCGTGATTTG
TGAGGTAGAGTTGCAGAATATATTGTCCACTCCCAACTTAGGGTACAACC
TCTTGTCTCCCAGCGCAGAGTTTGATGGCAAGTCACGGAATGGCCTTGGT
GGTCCTAATAATGGTGTGATGACTGCTTTCGATGGACATGTTACTTTTCA
GAACTTCGATGGCATGCTAGTTGCAACTGCGTGTCGTGTAGGAGATAACT
CTGTCGGTTCGCTGTTGGCTGCCCTCACTCCTTCAAACCCCAAGCACGAA
ACGAGTATCGACGTAAACGACTTTCATATGTTGAAGCCTTGCCACAAGAC
TATAAATGGGATTGGTGGCGTGATTTGTGAGGTAGAGTTGCAGAATATAT
TGTCCACTCCCAACTTAGGGTACAACCTCTTGTCTCCCAGCGCAGAGTTT
GATGGCAAGTCACGGAATGGCCTTGGTGGTCCTAATAATGGTGTGATGAC
TGCTTTCGATGGACATGTTACTTTTCAGAACTTCGATGGCATGCTAGTTG
CAACTGCGTGTCGTGTAGGAGATAACTCTGTCGGTTCGCTGTTGGCTGCC
CTCACTCCTTCAAACCCCAAGCACGAAACGAGTATCGACGTAAACGACTT
TCAT
back to top