mRNA_P-fluviatile_contig76.14103.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig76.14103.1
Unique NamemRNA_P-fluviatile_contig76.14103.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig76.14103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig76contigP-fluviatile_contig76:362819..363704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size267
Cds size267
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig76.14103.1prot_P-fluviatile_contig76.14103.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig76 362819..363704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817190.5921972-CDS-P-fluviatile_contig76:362818..3629021622817190.5921972-CDS-P-fluviatile_contig76:362818..362902Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 362819..362902 +
1693571454.0304775-CDS-P-fluviatile_contig76:362818..3629021693571454.0304775-CDS-P-fluviatile_contig76:362818..362902Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 362819..362902 +
1622817190.6035798-CDS-P-fluviatile_contig76:363035..3631431622817190.6035798-CDS-P-fluviatile_contig76:363035..363143Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 363036..363143 +
1693571454.0469074-CDS-P-fluviatile_contig76:363035..3631431693571454.0469074-CDS-P-fluviatile_contig76:363035..363143Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 363036..363143 +
1622817190.6143432-CDS-P-fluviatile_contig76:363629..3637041622817190.6143432-CDS-P-fluviatile_contig76:363629..363704Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 363630..363704 +
1693571454.060531-CDS-P-fluviatile_contig76:363629..3637041693571454.060531-CDS-P-fluviatile_contig76:363629..363704Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 363630..363704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig76.14103.1

>prot_P-fluviatile_contig76.14103.1 ID=prot_P-fluviatile_contig76.14103.1|Name=mRNA_P-fluviatile_contig76.14103.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=89bp
WEAVLHRVDAQLRRQGFTGKRVPVWGAKIGQGSGRASRVEIKCAAWGTAR
ASKKTAKKRTWSSKCKCDFGVAVSWNSTTPPTIQKVTC*
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mRNA from alignment at P-fluviatile_contig76:362819..363704+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig76.14103.1 ID=mRNA_P-fluviatile_contig76.14103.1|Name=mRNA_P-fluviatile_contig76.14103.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=886bp|location=Sequence derived from alignment at P-fluviatile_contig76:362819..363704+ (Porterinema fluviatile SAG_2381)
TGGGAGGCGGTGTTGCACAGGGTCGACGCACAGCTTCGCCGCCAAGGATT
CACGGGGAAAAGGGTCCCTGTTTGGGGAGCTAAGGTGCGCCCCAACCGTC
GACGTCGTTGTTGTCTTCGTTTCAATTCGCCGCGACGATAGCGGGCCCTC
TGAAACCAGGACGTTCCTACCTGCCACACCGACGTTCCTCGCATCTCGGA
ATGAAACGCACGAGCAGATCGGACAAGGATCCGGCCGAGCGAGCCGAGTG
GAGATCAAGTGTGCCGCTTGGGGGACTGCCAGAGCGTCGAAAAAAACGGC
AAAGAAGAGGACTTGGTCTTCTAAGGCAAGGGTTCAAATAACTGTTCTAC
TTACCGCTGCCCGATATGGATGGTTGAAATTGCAACTCCGAGTATGTGCC
CTGGACTTGCAAGAACGAAGAAGATATTGAGCTGTAAAGGGCAAGAGGGG
GGTGAGAATGGCACAGTGTGAGTAATATGGGGAGGAAAGAGATAACGTGA
AGGCGGAGGTGAGGTAAAGAGGATGTGACACTAACACAAGAGCTAAAAAA
ACGAGCGCCACACTAAGCAATGATGGTGGCCGAAAGGAGCACAGAAGGAG
AGGGGATAGCATGTGTAGGACTCTTTCTAGAAACGTAAAGAGCGACTCAA
ACGTTGCTGATGGCTCTAGCAGGGGTAGGGACGGTGCTTCGCTCGAAAGG
GAGGATGCGTGTTCAATGGTCTAATGACGAGGGCTGAGCAACCGCAGTTG
ATCCCCCCCGACCGTTTTCCTGTCTTGCCGACATGTTCGTGTTTCGTGTT
TCGACTCCCAGTGCAAGTGCGACTTTGGCGTCGCCGTCTCCTGGAACAGC
ACCACACCCCCAACAATTCAAAAGGTGACATGTTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig76:362819..363704+

>mRNA_P-fluviatile_contig76.14103.1 ID=mRNA_P-fluviatile_contig76.14103.1|Name=mRNA_P-fluviatile_contig76.14103.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=534bp|location=Sequence derived from alignment at P-fluviatile_contig76:362819..363704+ (Porterinema fluviatile SAG_2381)
TGGGAGGCGGTGTTGCACAGGGTCGACGCACAGCTTCGCCGCCAAGGATT
CACGGGGAAAAGGGTCCCTGTTTGGGGAGCTAAGTGGGAGGCGGTGTTGC
ACAGGGTCGACGCACAGCTTCGCCGCCAAGGATTCACGGGGAAAAGGGTC
CCTGTTTGGGGAGCTAAGATCGGACAAGGATCCGGCCGAGCGAGCCGAGT
GGAGATCAAGTGTGCCGCTTGGGGGACTGCCAGAGCGTCGAAAAAAACGG
CAAAGAAGAGGACTTGGTCTTCTAAGATCGGACAAGGATCCGGCCGAGCG
AGCCGAGTGGAGATCAAGTGTGCCGCTTGGGGGACTGCCAGAGCGTCGAA
AAAAACGGCAAAGAAGAGGACTTGGTCTTCTAAGTGCAAGTGCGACTTTG
GCGTCGCCGTCTCCTGGAACAGCACCACACCCCCAACAATTCAAAAGGTG
ACATGTTGATGCAAGTGCGACTTTGGCGTCGCCGTCTCCTGGAACAGCAC
CACACCCCCAACAATTCAAAAGGTGACATGTTGA
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