mRNA_P-fluviatile_contig76.14094.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig76.14094.1
Unique NamemRNA_P-fluviatile_contig76.14094.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig76.14094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig76contigP-fluviatile_contig76:303140..303472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size333
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817190.8537667-CDS-P-fluviatile_contig76:303139..3034721622817190.8537667-CDS-P-fluviatile_contig76:303139..303472Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 303140..303472 +
1693571455.1010773-CDS-P-fluviatile_contig76:303139..3034721693571455.1010773-CDS-P-fluviatile_contig76:303139..303472Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 303140..303472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig76.14094.1prot_P-fluviatile_contig76.14094.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig76 303140..303472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig76.14094.1

>prot_P-fluviatile_contig76.14094.1 ID=prot_P-fluviatile_contig76.14094.1|Name=mRNA_P-fluviatile_contig76.14094.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=111bp
MSPTVRTTPRQTTQTRVIVILIATEPQIGKTAPWEKTITRGVTQMAKTAA
QNRVNVPGMNRIVKTVTRQKAETVIIPRIPIQTTQRETNAIATVSRTHHY
RSTVGRSPTK*
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mRNA from alignment at P-fluviatile_contig76:303140..303472+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig76.14094.1 ID=mRNA_P-fluviatile_contig76.14094.1|Name=mRNA_P-fluviatile_contig76.14094.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=333bp|location=Sequence derived from alignment at P-fluviatile_contig76:303140..303472+ (Porterinema fluviatile SAG_2381)
ATGTCACCAACGGTCAGAACAACGCCACGTCAAACAACGCAAACCAGAGT
AATTGTTATTCTCATCGCGACAGAGCCACAAATAGGCAAAACGGCACCAT
GGGAAAAAACGATAACCAGAGGAGTTACTCAAATGGCCAAAACAGCGGCG
CAGAATCGAGTAAACGTACCGGGGATGAATCGAATCGTCAAGACGGTGAC
ACGACAAAAGGCAGAAACGGTGATCATTCCCAGAATACCGATCCAAACGA
CCCAAAGAGAGACCAACGCGATTGCGACAGTCAGCAGAACCCACCACTAC
CGCAGTACGGTTGGACGGTCACCAACGAAATAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig76:303140..303472+

>mRNA_P-fluviatile_contig76.14094.1 ID=mRNA_P-fluviatile_contig76.14094.1|Name=mRNA_P-fluviatile_contig76.14094.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=666bp|location=Sequence derived from alignment at P-fluviatile_contig76:303140..303472+ (Porterinema fluviatile SAG_2381)
ATGTCACCAACGGTCAGAACAACGCCACGTCAAACAACGCAAACCAGAGT
AATTGTTATTCTCATCGCGACAGAGCCACAAATAGGCAAAACGGCACCAT
GGGAAAAAACGATAACCAGAGGAGTTACTCAAATGGCCAAAACAGCGGCG
CAGAATCGAGTAAACGTACCGGGGATGAATCGAATCGTCAAGACGGTGAC
ACGACAAAAGGCAGAAACGGTGATCATTCCCAGAATACCGATCCAAACGA
CCCAAAGAGAGACCAACGCGATTGCGACAGTCAGCAGAACCCACCACTAC
CGCAGTACGGTTGGACGGTCACCAACGAAATAGATGTCACCAACGGTCAG
AACAACGCCACGTCAAACAACGCAAACCAGAGTAATTGTTATTCTCATCG
CGACAGAGCCACAAATAGGCAAAACGGCACCATGGGAAAAAACGATAACC
AGAGGAGTTACTCAAATGGCCAAAACAGCGGCGCAGAATCGAGTAAACGT
ACCGGGGATGAATCGAATCGTCAAGACGGTGACACGACAAAAGGCAGAAA
CGGTGATCATTCCCAGAATACCGATCCAAACGACCCAAAGAGAGACCAAC
GCGATTGCGACAGTCAGCAGAACCCACCACTACCGCAGTACGGTTGGACG
GTCACCAACGAAATAG
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