mRNA_P-fluviatile_contig76.14093.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig76.14093.1
Unique NamemRNA_P-fluviatile_contig76.14093.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig76.14093.1 vs. uniprot
Match: A0A453BY95_AEGTS (Helitron_like_N domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453BY95_AEGTS)

HSP 1 Score: 81.3 bits (199), Expect = 1.430e-14
Identity = 59/180 (32.78%), Postives = 89/180 (49.44%), Query Frame = 1
Query:   19 PNTECQHCAAILFKEEKTN------------CCNQGKCATSPLKEIPPELNTIFQS-----VEFYNNQRIYNSLFSFTAMAAVGIKKETWTNPKPPSMLTMHGKAYHRIFDMQEQYANMNVQNSARVYIYDAD--FADQVKALRIN-------PITANALRNHIQDHIPWAQQYKSAVDQ 480
            P  +CQ+C A+L+ EE+ N            CC QGK    PL+E PP L  + +S     V F  N R YNS+FSFT+M  V + KE  T  K P +  +HG+ YH I  +  +    N    A++YIY+ +   A+++ A R N       P     L+  + D+   A+ ++ A D+
Sbjct:   97 PTYKCQYCKALLWCEERLNSNKGTKTPSFGICCKQGKIDLPPLREPPPYLRNLLRSEGQDSVNFKENIRSYNSMFSFTSMGGV-VDKEINTR-KGPYVFRLHGQNYHHIGTLLPE--GTNKPRFAQLYIYNTENEVANRISASRCNDNKSTVDPNIVKELQIMLDDNNILAKTFRMARDR 272          
BLAST of mRNA_P-fluviatile_contig76.14093.1 vs. uniprot
Match: A0A453F1I5_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453F1I5_AEGTS)

HSP 1 Score: 72.8 bits (177), Expect = 7.080e-12
Identity = 54/180 (30.00%), Postives = 87/180 (48.33%), Query Frame = 1
Query:   19 PNTECQHCAAILFKEEKTN------------CCNQGKCATSPLKEIPPELNTIFQS-----VEFYNNQRIYNSLFSFTAMAAVGIKKETWTNPKPPSMLTMHGKAYHRIFDMQEQYANMNVQNSARVYIYDAD--FADQVKALR-------INPITANALRNHIQDHIPWAQQYKSAVDQ 480
            P  +CQ+C A+L+ EE+ N            CC QGK    PL+  PP L  + +S     V F  N R YNS+FSFT++    + KE  T  K P +  +HG+ YH I  +  Q    +    A++YIY+ +    +++ A R       ++P     L+  + D+   A+ ++ A D+
Sbjct:  151 PTYKCQYCKALLWCEERLNSNKGTTTPSFGICCKQGKIDLPPLRGPPPYLRNLLRSEGQDSVNFKENIRSYNSMFSFTSIGGA-VDKEINTR-KGPYVFRLHGQNYHHIGTLLPQ--GTDKPRFAQLYIYNTENEVENKISASRRNDNKSTVDPNIVKELKIMLDDNNILAKTFRMARDR 326          
BLAST of mRNA_P-fluviatile_contig76.14093.1 vs. uniprot
Match: T1LQ40_TRIUA (ATP-dependent DNA helicase n=1 Tax=Triticum urartu TaxID=4572 RepID=T1LQ40_TRIUA)

HSP 1 Score: 66.6 bits (161), Expect = 1.790e-9
Identity = 49/149 (32.89%), Postives = 76/149 (51.01%), Query Frame = 1
Query:   76 CCNQGKCATSPLKEIPPELNTIFQS-----VEFYNNQRIYNSLFSFTAMAAVGIKKETWTNPKPPSMLTMHGKAYHRIFDMQEQYANMNVQNSARVYIYDAD--FADQVKALRIN-------PITANALRNHIQDHIPWAQQYKSAVDQ 480
            CC QGK    PL+E PP L  + +S     V F  N R YNS+FSFT+M  V + KE  T+ K P +  +HG+ YH I  +  +    +    A++YIY+ +   A+++ A R N       P     L+  + D+   A+ ++ A D+
Sbjct:    9 CCKQGKIDLPPLREPPPYLRNLLRSEGQDSVNFKENIRSYNSMFSFTSMGGV-VDKEINTH-KGPYVFRLHGQNYHHIGTLLPE--GTDKPRFAQLYIYNTENEVANRISASRCNDNKSTVDPNIVKELQIMLDDNNILAKTFRMARDR 153          
BLAST of mRNA_P-fluviatile_contig76.14093.1 vs. uniprot
Match: UPI00064DD71F (uncharacterized protein LOC105976260 n=1 Tax=Erythranthe guttata TaxID=4155 RepID=UPI00064DD71F)

HSP 1 Score: 65.5 bits (158), Expect = 3.900e-9
Identity = 45/160 (28.12%), Postives = 78/160 (48.75%), Query Frame = 1
Query:   28 ECQHCAAILFK-EEKTNCCNQGKCATSPLKEIPPELNTIFQS-----VEFYNNQRIYNSLFSFTAMAAVGIKKETWTNPKPPSMLTMHGKAYHRIFDMQEQYANMNVQNSARVYIYDAD--FADQVKALRINPITANALRN--HIQDHIPWAQQYKSAVD 477
            +C HC A  F+ E  T CC  GK   +P+ E+P EL  +F S     +EF NN R++N +FSFT+   V + KE  +  +        G  YH   D+     N N  ++ ++Y  D +    +Q+  L+ + ++   +    H+ +  P+A+ ++   D
Sbjct:    3 DCSHCGATRFEYEPPTFCCGNGKIKLAPI-EVPDELYDLFTSPSEEAIEFRNNIRVFNCIFSFTSFG-VKLDKELASARRGVYTFRAQGMVYH---DLPGLNPNENGPSNFQLYFVDTENEVTNQMNVLQTSTLSGGTVEKLIHVLEINPYAKIFRRLKD 157          
BLAST of mRNA_P-fluviatile_contig76.14093.1 vs. uniprot
Match: UPI00064DF9CB (uncharacterized protein LOC105958298 n=1 Tax=Erythranthe guttata TaxID=4155 RepID=UPI00064DF9CB)

HSP 1 Score: 63.5 bits (153), Expect = 1.200e-8
Identity = 47/160 (29.38%), Postives = 79/160 (49.38%), Query Frame = 1
Query:   28 ECQHCAAILFK-EEKTNCCNQGKCATSPLKEIPPELNTIFQS-----VEFYNNQRIYNSLFSFTAMAAVGIKKETWTNPKPPSMLTMHGKAYHRIFDMQEQYANMNVQNSARVYIYDAD--FADQVKALRINPITANALRNHIQ--DHIPWAQQYKSAVD 477
            EC HC A+ F+ E  T CC  GK   +P+ E+P +L  +F S     VEF NN R++N +FSFT+   V + KE  +  +        G  YH   D+   Y      ++ ++Y  D D    +++K L+   ++ + +   IQ  +  P+A+ ++   D
Sbjct:    3 ECIHCGAVRFEYEPPTFCCGNGKIKLAPI-EVPDDLYELFTSQIEDAVEFRNNIRVFNCIFSFTSFG-VKLDKELASARRGVYTFRAQGMVYH---DLPGLYPTEEGPSNFQLYFVDTDNEVDNRLKVLQNPSLSGDTVERLIQILEVNPYAKIFRRLKD 157          
BLAST of mRNA_P-fluviatile_contig76.14093.1 vs. uniprot
Match: A0A484L614_9ASTE (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484L614_9ASTE)

HSP 1 Score: 63.2 bits (152), Expect = 2.250e-8
Identity = 47/162 (29.01%), Postives = 78/162 (48.15%), Query Frame = 1
Query:   13 NSPNTECQHCAAILFKEEKTN------------CCNQGKCATSPLKEIPPELNTIF------QSVEFYNNQRIYNSLFSFTAMAAVGIKKETWTNPKPPSMLTMHGKAYHRIFDMQEQYANMNVQNSARVYIYDADFADQVKALRINPITANALRNHIQDHI 444
            ++P   CQHC AI++KEE+ N            CC +G+     LK  P  L  +       ++  F  N R YNS+F+FT++ A  I  E     K P +  + G+ YH+I  +  Q  +       ++Y+YD D + +V + RIN +T +  ++ +   I
Sbjct:   76 SNPTEICQHCQAIMWKEERNNSRYQNRPPTFSLCCMEGRIKLEALKPAPEYLGNLLSYSGGKRAKLFRENIRAYNSIFAFTSIGA-DINYEI-NKSKGPYVFRISGQNYHQIGSLMPQ--SKKPHKFLQLYMYD-DHSSEVHS-RINSLTKDKPQSKLDPDI 231          
BLAST of mRNA_P-fluviatile_contig76.14093.1 vs. uniprot
Match: R7QQL8_CHOCR (ATP-dependent DNA helicase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQL8_CHOCR)

HSP 1 Score: 58.2 bits (139), Expect = 1.440e-6
Identity = 40/134 (29.85%), Postives = 62/134 (46.27%), Query Frame = 1
Query:   25 TECQHCAAILFKEEK-----------TNCCNQGKCATSPLKEIPPELNTIF-----QSVEFYNNQRIYNSLFSFTAMAAVGIKKETWTNPKPPSMLTMHGKAYHRIFDMQEQYANMNVQNSARVYIYDADFADQ 378
            TEC HC A+ F +E+           + CC +GK +   L + P  L ++      +S  F  N R YN+  S  ++ A  + +    +   P+M TM G+ YH +  M        V + A VYI+D D+A Q
Sbjct:    4 TECSHCKALHFVQERLLSSSAARPMFSTCCKKGKLSLPLLPDPPALLRSLLIDDTQRSRRFRKNIRAYNAALSMASVVAKWVNRGPGPSNFNPTM-TMQGEMYHYMGPMMPSEGR--VPSYASVYIHDTDYATQ 134          
BLAST of mRNA_P-fluviatile_contig76.14093.1 vs. uniprot
Match: UPI0007EF8CA7 (uncharacterized protein LOC108212034 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF8CA7)

HSP 1 Score: 55.5 bits (132), Expect = 1.240e-5
Identity = 31/106 (29.25%), Postives = 53/106 (50.00%), Query Frame = 1
Query:   19 PNTECQHCAAILFKEEKTN------------CCNQGKCATSPLKEIPPELNTIF----QSVEFYNNQRIYNSLFSFTAMAAVGIKKETWTNPKPPSMLTMHGKAYH 288
            P   CQHC AI++KEE+ N            CC +G+         P  L+ ++    ++ +F NN R+YN++F+FT+M   G    +  N   P +  ++G+ +H
Sbjct:  338 PTAVCQHCHAIMWKEERVNKNVIKGTHEFSTCCGKGQIKLPKAPPTPSFLHQVYNDPKKAKKFRNNIRMYNTMFAFTSMG--GKVDHSINNGSSPYIYRLNGQNHH 441          
BLAST of mRNA_P-fluviatile_contig76.14093.1 vs. uniprot
Match: UPI000B90307F (uncharacterized protein LOC110913191 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI000B90307F)

HSP 1 Score: 55.1 bits (131), Expect = 1.660e-5
Identity = 46/186 (24.73%), Postives = 81/186 (43.55%), Query Frame = 1
Query:   19 PNTECQHCAAILFKEEKTN------------CCNQGKCATSPLKEIPPELNTIFQ-----SVEFYNNQRIYNSLFSFTAMAAVGIKKETWTNPKPPSMLTMHGKAYHRIFDMQEQYANMNVQNSARVYIYDAD--FADQVKALRI---------NPITA---NALRNHIQDHIPWAQQYKSAVDQV 483
            P  +C  C A+L+ EE+              CC  G     P ++ P  L  +++     SV+F NN R YN +F+FT+M  +G    T    + P +  + GK YH +  +     +       ++YIYD +   +++  A+ +         N + A   N L++ +    P  Q Y+ A D++
Sbjct:  146 PVNKCHSCGALLWDEERRRGNRNCSKTSYSLCCGGGNVVLPPTEDPPRLLYNLYRNKHPKSVQFINNIRAYNMMFTFTSM--LGKVDSTINRGRGPYIYKIKGKNYHLLGGLMPTQGDR--PKFGQLYIYDTENEVSNRSNAISLGAAVNVENKNTLDAQIINDLKDLLDHSNPLVQTYRIARDRL 327          
BLAST of mRNA_P-fluviatile_contig76.14093.1 vs. uniprot
Match: A0A484LWS5_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LWS5_9ASTE)

HSP 1 Score: 53.9 bits (128), Expect = 2.990e-5
Identity = 43/150 (28.67%), Postives = 70/150 (46.67%), Query Frame = 1
Query:   13 NSPNTECQHCAAILFKEEKTN------------CCNQGKCATSPLKEIPPELNTIF------QSVEFYNNQRIYNSLFSFTAMAAVGIKKETWTNPKPPSMLTMHGKAYHRIFDMQEQYANMNVQNSARVYIYDADFADQVKALRINPIT 408
            ++P   C HC AI++KEE+ N            CC +G+     LK  P  L  +       +S  F +N R YNS+F+ T++ A  I  E     K P +  + G+  H+I  +  Q  +       ++Y+YD D   +V + R+N +T
Sbjct:   74 SNPTERCNHCDAIMWKEERNNSRYPNRPPTFSLCCMEGRINLEALKHAPEYLRDLLNYSGGKRSKTFRDNIRAYNSMFASTSIGA-DIDYEI-NKSKGPYVFRISGQNCHQIGSLMPQ--SNKPHKFLQLYMYD-DQCSEVHS-RMNSLT 217          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig76.14093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A453BY95_AEGTS1.430e-1432.78Helitron_like_N domain-containing protein n=2 Tax=... [more]
A0A453F1I5_AEGTS7.080e-1230.00Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
T1LQ40_TRIUA1.790e-932.89ATP-dependent DNA helicase n=1 Tax=Triticum urartu... [more]
UPI00064DD71F3.900e-928.13uncharacterized protein LOC105976260 n=1 Tax=Eryth... [more]
UPI00064DF9CB1.200e-829.38uncharacterized protein LOC105958298 n=1 Tax=Eryth... [more]
A0A484L614_9ASTE2.250e-829.01Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
R7QQL8_CHOCR1.440e-629.85ATP-dependent DNA helicase n=1 Tax=Chondrus crispu... [more]
UPI0007EF8CA71.240e-529.25uncharacterized protein LOC108212034 n=1 Tax=Daucu... [more]
UPI000B90307F1.660e-524.73uncharacterized protein LOC110913191 n=1 Tax=Helia... [more]
A0A484LWS5_9ASTE2.990e-528.67Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig76contigP-fluviatile_contig76:298929..299490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score79.7
Seed ortholog evalue1.6e-12
Seed eggNOG ortholog4565.Traes_2BL_AD318CB8E.1
KEGG koko:K15255
EggNOG free text desc.Belongs to the helicase family
EggNOG OGs37Q72@33090,3GCCF@35493,3ITHE@38820,3M3EP@4447,COG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.D
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Hectar predicted targeting categoryother localisation
Exons1
Model size562
Cds size561
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817194.0219114-CDS-P-fluviatile_contig76:298928..2994891622817194.0219114-CDS-P-fluviatile_contig76:298928..299489Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 298929..299489 +
1693571462.9041126-CDS-P-fluviatile_contig76:298928..2994891693571462.9041126-CDS-P-fluviatile_contig76:298928..299489Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 298929..299489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig76.14093.1prot_P-fluviatile_contig76.14093.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig76 298929..299489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig76.14093.1

>prot_P-fluviatile_contig76.14093.1 ID=prot_P-fluviatile_contig76.14093.1|Name=mRNA_P-fluviatile_contig76.14093.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=187bp
TRLPNSPNTECQHCAAILFKEEKTNCCNQGKCATSPLKEIPPELNTIFQS
VEFYNNQRIYNSLFSFTAMAAVGIKKETWTNPKPPSMLTMHGKAYHRIFD
MQEQYANMNVQNSARVYIYDADFADQVKALRINPITANALRNHIQDHIPW
AQQYKSAVDQVINNSEATHGPAFIEFAEVSRAIDGPV
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mRNA from alignment at P-fluviatile_contig76:298929..299490+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig76.14093.1 ID=mRNA_P-fluviatile_contig76.14093.1|Name=mRNA_P-fluviatile_contig76.14093.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=562bp|location=Sequence derived from alignment at P-fluviatile_contig76:298929..299490+ (Porterinema fluviatile SAG_2381)
ACAAGGTTACCAAACTCTCCAAATACCGAATGTCAACACTGTGCCGCCAT TTTGTTCAAAGAAGAAAAAACGAATTGCTGTAATCAAGGCAAGTGCGCGA CCTCACCGCTCAAAGAAATTCCTCCAGAGCTGAACACAATATTCCAAAGC GTTGAATTTTACAACAATCAACGAATTTACAATTCGTTGTTCTCCTTTAC CGCGATGGCGGCAGTTGGAATAAAAAAAGAAACATGGACGAATCCGAAGC CTCCGTCGATGCTAACAATGCATGGCAAAGCGTATCATAGGATTTTTGAC ATGCAAGAGCAATACGCAAATATGAATGTTCAAAATTCAGCTAGGGTTTA CATTTATGACGCTGACTTCGCAGATCAAGTGAAGGCATTGCGCATTAATC CCATTACCGCAAACGCCTTGAGAAATCACATACAGGACCACATCCCGTGG GCACAGCAGTACAAATCCGCGGTTGACCAGGTCATCAACAACTCGGAGGC CACGCATGGCCCAGCTTTCATTGAATTCGCCGAAGTAAGCAGGGCGATCG ACGGGCCTGTTA
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Coding sequence (CDS) from alignment at P-fluviatile_contig76:298929..299490+

>mRNA_P-fluviatile_contig76.14093.1 ID=mRNA_P-fluviatile_contig76.14093.1|Name=mRNA_P-fluviatile_contig76.14093.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1122bp|location=Sequence derived from alignment at P-fluviatile_contig76:298929..299490+ (Porterinema fluviatile SAG_2381)
ACAAGGTTACCAAACTCTCCAAATACCGAATGTCAACACTGTGCCGCCAT
TTTGTTCAAAGAAGAAAAAACGAATTGCTGTAATCAAGGCAAGTGCGCGA
CCTCACCGCTCAAAGAAATTCCTCCAGAGCTGAACACAATATTCCAAAGC
GTTGAATTTTACAACAATCAACGAATTTACAATTCGTTGTTCTCCTTTAC
CGCGATGGCGGCAGTTGGAATAAAAAAAGAAACATGGACGAATCCGAAGC
CTCCGTCGATGCTAACAATGCATGGCAAAGCGTATCATAGGATTTTTGAC
ATGCAAGAGCAATACGCAAATATGAATGTTCAAAATTCAGCTAGGGTTTA
CATTTATGACGCTGACTTCGCAGATCAAGTGAAGGCATTGCGCATTAATC
CCATTACCGCAAACGCCTTGAGAAATCACATACAGGACCACATCCCGTGG
GCACAGCAGTACAAATCCGCGGTTGACCAGGTCATCAACAACTCGGAGGC
CACGCATGGCCCAGCTTTCATTGAATTCGCCGAAGTAAGCAGGGCGATCG
ACGGGCCTGTTACAAGGTTACCAAACTCTCCAAATACCGAATGTCAACAC
TGTGCCGCCATTTTGTTCAAAGAAGAAAAAACGAATTGCTGTAATCAAGG
CAAGTGCGCGACCTCACCGCTCAAAGAAATTCCTCCAGAGCTGAACACAA
TATTCCAAAGCGTTGAATTTTACAACAATCAACGAATTTACAATTCGTTG
TTCTCCTTTACCGCGATGGCGGCAGTTGGAATAAAAAAAGAAACATGGAC
GAATCCGAAGCCTCCGTCGATGCTAACAATGCATGGCAAAGCGTATCATA
GGATTTTTGACATGCAAGAGCAATACGCAAATATGAATGTTCAAAATTCA
GCTAGGGTTTACATTTATGACGCTGACTTCGCAGATCAAGTGAAGGCATT
GCGCATTAATCCCATTACCGCAAACGCCTTGAGAAATCACATACAGGACC
ACATCCCGTGGGCACAGCAGTACAAATCCGCGGTTGACCAGGTCATCAAC
AACTCGGAGGCCACGCATGGCCCAGCTTTCATTGAATTCGCCGAAGTAAG
CAGGGCGATCGACGGGCCTGTT
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