mRNA_P-fluviatile_contig76.14084.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig76.14084.1
Unique NamemRNA_P-fluviatile_contig76.14084.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig76.14084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig76contigP-fluviatile_contig76:213925..214527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size603
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig76.14084.1prot_P-fluviatile_contig76.14084.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig76 214001..214303 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817190.7909575-UTR-P-fluviatile_contig76:213924..2140001622817190.7909575-UTR-P-fluviatile_contig76:213924..214000Porterinema fluviatile SAG_2381UTRP-fluviatile_contig76 213925..214000 +
1693571454.1224155-UTR-P-fluviatile_contig76:213924..2140001693571454.1224155-UTR-P-fluviatile_contig76:213924..214000Porterinema fluviatile SAG_2381UTRP-fluviatile_contig76 213925..214000 +
1622817190.8149385-UTR-P-fluviatile_contig76:214303..2145271622817190.8149385-UTR-P-fluviatile_contig76:214303..214527Porterinema fluviatile SAG_2381UTRP-fluviatile_contig76 214304..214527 +
1693571454.9746757-UTR-P-fluviatile_contig76:214303..2145271693571454.9746757-UTR-P-fluviatile_contig76:214303..214527Porterinema fluviatile SAG_2381UTRP-fluviatile_contig76 214304..214527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817190.8034887-CDS-P-fluviatile_contig76:214000..2143031622817190.8034887-CDS-P-fluviatile_contig76:214000..214303Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 214001..214303 +
1693571454.4085886-CDS-P-fluviatile_contig76:214000..2143031693571454.4085886-CDS-P-fluviatile_contig76:214000..214303Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 214001..214303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig76.14084.1

>prot_P-fluviatile_contig76.14084.1 ID=prot_P-fluviatile_contig76.14084.1|Name=mRNA_P-fluviatile_contig76.14084.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=101bp
MAGECSIGLSSASIGQPYRGPTTTTYVIRRFTTSNGSSLLDDPPHERPII
MLTAWSTASKGPVGGDLRNGIPTARVVNRVGRPEIHSGTHHRTNHCIHVQ
*
back to top

mRNA from alignment at P-fluviatile_contig76:213925..214527+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig76.14084.1 ID=mRNA_P-fluviatile_contig76.14084.1|Name=mRNA_P-fluviatile_contig76.14084.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=603bp|location=Sequence derived from alignment at P-fluviatile_contig76:213925..214527+ (Porterinema fluviatile SAG_2381)
AAGGTGGTTGGCCACTCCACTTGGACGGATACATCTCCCCTAGCCAACAT
CTGCTCCGGCTGCAGGTACTCTGTCGATGGCCGGTGAGTGTAGCATCGGG
TTGTCTTCCGCATCCATCGGCCAGCCTTACCGGGGACCCACCACCACCAC
ATATGTGATCCGGAGGTTCACCACATCTAACGGCTCGAGTTTGCTCGATG
ATCCACCACACGAACGACCAATTATCATGCTCACGGCATGGTCAACGGCA
TCTAAAGGCCCGGTCGGCGGGGACCTACGAAACGGGATTCCCACAGCCCG
GGTTGTGAACCGTGTCGGACGGCCCGAGATCCACTCGGGGACCCACCACA
GGACCAACCACTGCATACACGTGCAATAAATTGTTTCCGCTGTTTATGTC
GGGGTTCTCGTCACCGATCGCGATGCAATTGCCCCTCCCCTCCATGTTTT
CCCATCCGTCGTGGCGGATAAAGTATCGACGAATCCCTCCTCAGCACATG
GTGGTCGAAAGCTTCCCTTGCATTCCGCCTCTGCCTTGGACCTCGCTCTC
GCCTCGCCCTAGCTGGTTGTCAGCCACCGCCACTCAGTTCCTATCCCTGT
GCC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig76:213925..214527+

>mRNA_P-fluviatile_contig76.14084.1 ID=mRNA_P-fluviatile_contig76.14084.1|Name=mRNA_P-fluviatile_contig76.14084.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=606bp|location=Sequence derived from alignment at P-fluviatile_contig76:213925..214527+ (Porterinema fluviatile SAG_2381)
ATGGCCGGTGAGTGTAGCATCGGGTTGTCTTCCGCATCCATCGGCCAGCC
TTACCGGGGACCCACCACCACCACATATGTGATCCGGAGGTTCACCACAT
CTAACGGCTCGAGTTTGCTCGATGATCCACCACACGAACGACCAATTATC
ATGCTCACGGCATGGTCAACGGCATCTAAAGGCCCGGTCGGCGGGGACCT
ACGAAACGGGATTCCCACAGCCCGGGTTGTGAACCGTGTCGGACGGCCCG
AGATCCACTCGGGGACCCACCACAGGACCAACCACTGCATACACGTGCAA
TAAATGGCCGGTGAGTGTAGCATCGGGTTGTCTTCCGCATCCATCGGCCA
GCCTTACCGGGGACCCACCACCACCACATATGTGATCCGGAGGTTCACCA
CATCTAACGGCTCGAGTTTGCTCGATGATCCACCACACGAACGACCAATT
ATCATGCTCACGGCATGGTCAACGGCATCTAAAGGCCCGGTCGGCGGGGA
CCTACGAAACGGGATTCCCACAGCCCGGGTTGTGAACCGTGTCGGACGGC
CCGAGATCCACTCGGGGACCCACCACAGGACCAACCACTGCATACACGTG
CAATAA
back to top