mRNA_P-fluviatile_contig76.14062.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig76.14062.1
Unique NamemRNA_P-fluviatile_contig76.14062.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig76.14062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig76contigP-fluviatile_contig76:43398..46428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817190.0603173-CDS-P-fluviatile_contig76:43397..434791622817190.0603173-CDS-P-fluviatile_contig76:43397..43479Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 43398..43479 +
1693571453.02813-CDS-P-fluviatile_contig76:43397..434791693571453.02813-CDS-P-fluviatile_contig76:43397..43479Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 43398..43479 +
1622817190.072376-CDS-P-fluviatile_contig76:46347..464271622817190.072376-CDS-P-fluviatile_contig76:46347..46427Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 46348..46427 +
1693571453.039172-CDS-P-fluviatile_contig76:46347..464271693571453.039172-CDS-P-fluviatile_contig76:46347..46427Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 46348..46427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig76.14062.1prot_P-fluviatile_contig76.14062.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig76 43398..46427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig76.14062.1

>prot_P-fluviatile_contig76.14062.1 ID=prot_P-fluviatile_contig76.14062.1|Name=mRNA_P-fluviatile_contig76.14062.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=54bp
VVLTCQGGTAHAGTGEDCVRACASDGAEYTSATCPFFSAAPLLIGRDPCC
FSDG
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mRNA from alignment at P-fluviatile_contig76:43398..46428+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig76.14062.1 ID=mRNA_P-fluviatile_contig76.14062.1|Name=mRNA_P-fluviatile_contig76.14062.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3031bp|location=Sequence derived from alignment at P-fluviatile_contig76:43398..46428+ (Porterinema fluviatile SAG_2381)
GTGGTGTTGACTTGCCAGGGAGGCACGGCACACGCGGGCACGGGCGAAGA
TTGTGTCCGTGCGTGCGCGTCTGACGGTGCAGGTGAGTGATGTGAGTATG
GCCCGTGGTTGTGAGGGGCTCCGCGCACCTGCCACTTTTTTGTCAACATG
CTACGACGGCTACGACTGCCTTTCGGATCCCTCCCCAGGCTCTCGAGAGA
TAGGTCGGGTTCTCCTGTGTCTGCTGTAGTTGTGATCCAAAATTCGGTCA
ACCCTCATTAGAATCGGCTTACGTCTCTCTACCGTATGGTCGCGTTGTGA
AGGTGAAAGGTGTCTTTTTCGCCACTTTCCTTGGAGCGTAAAGTTCGCCA
GAATGGGAGAATGTTCCGTAGAGTAGGGCACATTTGTTAAACGTCTCCCT
GCAACGGAAGAGGGGTAAGGGCTGCGTGGAGAGCTTTCTGATTCGAGACG
GAGTCAGGCACCCCTGCGTACCACCCATCCAAGATGTGAGCACTTGTTGA
AGGAGAAATATGTCGAAATACTGAGAATCGGGCCAATCCAGCAGAATGAC
GAACCATACGGATGTGCTGCAGGAAAGCATCGTAGCTTGTTTCGTACCAG
TTTACGCCGCTCGCTTGCTTGCACCGGAAGGCAATCGTCCGGGATGGGTT
TGCAATCACCGCGCGTGATGAATGCTGGCTTGAGATGGGATCAATATTCA
TAGCTGTTCGGGCGCGGGCGACAAGGTTCAACCTTGGCGCGATCCCAAGT
CGTTCGAAACTCACAGTCCGGTGGGCACGTTGAGACGACGTCCTGACCAC
GACCTGCCAGAGAGTCCAGGTGCTACATATTTTCCCCACTTGATTGCAAG
AGCAAAATCCGCGATTTCGTCAGGCAGCAAGCAGCTTTGCATCGATAGTG
TGCATCATCCGAACGAGAGCAGTTGAGGCTAACTAGCGCTATCGCGCCGC
GCCGTTTATCGGCCCGCGCTCCAGCGTATGCCCCTGCAGCCTGTAGTTTG
CAGGCGACAGTGAAAGTAAGCGTTGCCTACAGCAGTTGTGTGTTCTACAA
ATCATATCCATGTCGCTTTGGTACCAACCGAACGTTCCCAAGGCTAACGG
ATAATGTTTAAAAAAGGTGAACGACAGCTCAAGTCCAACACGACATCACG
GGCACAACCCAGAAAAATGTTGCCCTTGTTGGCAACATATACCGGCATTT
CCCAAATCGGACAACACACGGGAATCGAGGGAAACTTGCGGATCTCCTTG
CAAACGGCACCAAGAGCAACAAAGACACGTTCTTTGTACGGAATAGTCGA
AAGGGGCACTCGAGCGGCATTTCTCACTTTTGCAAATCCCCACTCGTCGA
GACACAGGTTGGACACGCCCACTCCTTTTGAGTCTTTGCAACAGCAGTTG
CGTATCTTAATCAGCGTGAAAACCACGCCGTCATTTGTTTCTCTGTTTCT
CCCCCGCTATTATGGAGCAATCTCGGATGAAAAGTACCCCCTCCAATAGC
GAGCGTGTTGGGATGTAACTTTGTGATAGCTGTATCTCCCTTCGAGGAAG
CCTACAACGCAAGAATTCATCGGGTCACTGCCTCACTTTCATTAGGGTTA
CGAGCGCTTCTTCGCCATGAACATCCTCGTCTACAGCATCCTTCTCGCCG
GTTGGATGAAGGAAGGAAGTTATGACGTCAATAAAAGTACGCGGATCTAC
GACAATGTAGAGCTCAAATCAAAGAACAATTTGTCCTCCATCGCCCGGCC
ATCGTCCAGCCATCATCCAGGCATCCACCGCCCGACCACCGTTCGACGAT
CGTCCGGTCGTCGTCCGGCCATAATTCGGCCGCTGCGCCTTGGTGACTTT
GCTCCTTCGTGTCTGCACGATATTCGGATTTCGGCTGCATACTTCCCGTC
GCAGTGTGCTTGATAGGGTCTTCGCTTGGCCCTTTGTAAAGGTAGGTAAG
TCGCTCATCGGTCGTAAACCAAGGAGAACAGTTTTATTCAGGCTACAGCG
ATTTTCCGTGGGTTTGATTTTCAATTAGTTTTGAAATTCCCTTTTTTTAC
AATTATCAGGGTTGGGTCTCAGATCCTATTTTCAGCAAAGATGAGGTTCA
GTCAAGATGAGGCGGCCGCCGCGCCGCCGCGCCTTCGCCGAGCGCTTTTT
CAGGTTCGGGTGTTGGCGCCGCCGAGCGTCTTGGCGCCTTGGCGGTCTCG
CCGTATTCGAGTGTCCGCGCGTTCGTCATCTTCGGTTGTTGGCGCCGCCG
CGCGTCTTGGCGCCTTCTTGGTCTTGCCTTCTTCGGGTCTGAACCACACG
TCTTTTGGCTGTAAATCTCCCACCTCTACGTGTTGCACGGCGACTTCCCT
TGATACGTTGTGAAGGCAGCGAAACCAGCAATAGATCGTGTCACATCTCT
ACCTGCTTGACAGCGGAATTATAGGCTACGGAGGAAGCTCATGTGTCGTT
TGTCCCGCTCCATCTTGGTGCTGCTGCGCGGTGCGGCCGATGTAGTATGT
GAATCGAAAAGGCTCCGTTGAAGGTGTGCGTTGCCCTCCAGGTATGTATC
TGATTTCGACTCTCCGTTCAAGCGCAAGGACGAAGGGAACCCTAAACCAA
TCTCGAGAAGCCTTTCCGTGAAAAAGGCACGCTGATACGGTCCTTTCCGT
ACGTGTGTAGAGTATGCACTCCCGTGCAGGCAGGCATCCGAAACACATAC
TTTCGAACTGCAGTTGCGCTTTCGGTGACTCGCCTTTGTGCTTCCGTGAT
TTGTTGTTGTGTGTCGGCTTACTTTTCATGGAGAGCAACTCCTGGTCATA
CTGTGTATGCCAACAGTGATCGGGTACGTGTAGTTGGGTCATGTAAACGC
CGCAGTGTACCCTCTCCACTTGTATTCCTCCTGACATTCAGCTCTCCCTC
TCTTGTAACGCTCTCATTCTCCGCCCCTTTTCTCGCTCTCCGTCGCAAAG
AGTACACCAGCGCGACCTGTCCGTTTTTCAGCGCGGCTCCGCTGCTGATT
GGCAGAGATCCTTGTTGCTTTTCCGACGGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig76:43398..46428+

>mRNA_P-fluviatile_contig76.14062.1 ID=mRNA_P-fluviatile_contig76.14062.1|Name=mRNA_P-fluviatile_contig76.14062.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=324bp|location=Sequence derived from alignment at P-fluviatile_contig76:43398..46428+ (Porterinema fluviatile SAG_2381)
GTGGTGTTGACTTGCCAGGGAGGCACGGCACACGCGGGCACGGGCGAAGA
TTGTGTCCGTGCGTGCGCGTCTGACGGTGCAGGTGGTGTTGACTTGCCAG
GGAGGCACGGCACACGCGGGCACGGGCGAAGATTGTGTCCGTGCGTGCGC
GTCTGACGGTGCAGAGTACACCAGCGCGACCTGTCCGTTTTTCAGCGCGG
CTCCGCTGCTGATTGGCAGAGATCCTTGTTGCTTTTCCGACGGGAGTACA
CCAGCGCGACCTGTCCGTTTTTCAGCGCGGCTCCGCTGCTGATTGGCAGA
GATCCTTGTTGCTTTTCCGACGGG
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