mRNA_P-fluviatile_contig75.14053.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig75.14053.1
Unique NamemRNA_P-fluviatile_contig75.14053.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig75.14053.1 vs. uniprot
Match: D8LGE4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE4_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 1.350e-55
Identity = 113/164 (68.90%), Postives = 131/164 (79.88%), Query Frame = 2 
Query:  368 TSAGEGAQLAEESVDLRIEGHSMQGASIELNLRFEDTVRKLEGSGDREARDAMLQLTREFKRLNDGLVKRLARISIINRTLVEILEKSQDGKAALTMRKAAELLVKGLANAEEEVNSLKATLREVEGQRDHYKALLAKTNAELENSHAYTQMSAAIGKNPDFSS 859
            T AG G  L +ES DLR EGH +QG+ IEL+LRFEDT R LE  GDREAR AML+L +EFK+LND L  +LARIS+INRTLVEIL KS+DG+AAL MRKAAELLVKGLANAEEEV SLKA   E+E QRDHYKALLA+TN+EL+ S A+ Q+S A+G  P  SS
Sbjct:   11 TPAG-GEGLVQESTDLRWEGHRLQGSHIELSLRFEDTTRTLESKGDREARAAMLRLAKEFKQLNDVLAAKLARISMINRTLVEILRKSEDGQAALMMRKAAELLVKGLANAEEEVFSLKAKAGELERQRDHYKALLARTNSELDVSRAHAQISEALGGEPAGSS 173
[Close]
BLAST of mRNA_P-fluviatile_contig75.14053.1 vs. uniprot
Match: A0A6H5KZE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE5_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 8.140e-54
Identity = 113/160 (70.62%), Postives = 130/160 (81.25%), Query Frame = 2 
Query:  368 TSAGEGAQLAEESVDLRIEGHSMQGASIELNLRFEDTVRKLEGSGDREARDAMLQLTREFKRLNDGLVKRLARISIINRTLVEILEKSQDGKAALTMRKAAELLVKGLANAEEEVNSLKATLREVEGQRDHYKALLAKTNAELENSHAYTQMSAAIGKNP 847
            TSAG G  L +ES DLR EGH +QGA IEL+LRFEDT + LE  GDREAR AML+L +EFK+LNDGL  +LARIS+INRTLVEIL KS+DG+AAL MRKAAELLVKGLANAEEEV SLKA   E+E QRDHYKALLA TN+EL+ S A+ Q+S A+G  P
Sbjct:   11 TSAG-GEGLVQESTDLRWEGHRLQGAHIELSLRFEDTTQTLESKGDREARAAMLRLAKEFKQLNDGLAAKLARISMINRTLVEILRKSEDGQAALMMRKAAELLVKGLANAEEEVFSLKAKAGELERQRDHYKALLATTNSELDISRAHAQISEALGGEP 169
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig75.14053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGE4_ECTSI1.350e-5568.90Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KZE5_9PHAE8.140e-5470.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig75contigP-fluviatile_contig75:571452..574090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_003740.1
Exons2
Model size2056
Cds size1419
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig75.14053.1prot_P-fluviatile_contig75.14053.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig75 571656..573657 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817189.3800635-UTR-P-fluviatile_contig75:571451..5716551622817189.3800635-UTR-P-fluviatile_contig75:571451..571655Porterinema fluviatile SAG_2381UTRP-fluviatile_contig75 571452..571655 -
1693571451.8264542-UTR-P-fluviatile_contig75:571451..5716551693571451.8264542-UTR-P-fluviatile_contig75:571451..571655Porterinema fluviatile SAG_2381UTRP-fluviatile_contig75 571452..571655 -
1622817189.414283-UTR-P-fluviatile_contig75:573657..5740901622817189.414283-UTR-P-fluviatile_contig75:573657..574090Porterinema fluviatile SAG_2381UTRP-fluviatile_contig75 573658..574090 -
1693571451.8565295-UTR-P-fluviatile_contig75:573657..5740901693571451.8565295-UTR-P-fluviatile_contig75:573657..574090Porterinema fluviatile SAG_2381UTRP-fluviatile_contig75 573658..574090 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817189.3934374-CDS-P-fluviatile_contig75:571655..5728221622817189.3934374-CDS-P-fluviatile_contig75:571655..572822Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 571656..572822 -
1693571451.835604-CDS-P-fluviatile_contig75:571655..5728221693571451.835604-CDS-P-fluviatile_contig75:571655..572822Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 571656..572822 -
1622817189.4035478-CDS-P-fluviatile_contig75:573405..5736571622817189.4035478-CDS-P-fluviatile_contig75:573405..573657Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 573406..573657 -
1693571451.8455904-CDS-P-fluviatile_contig75:573405..5736571693571451.8455904-CDS-P-fluviatile_contig75:573405..573657Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 573406..573657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig75.14053.1

>prot_P-fluviatile_contig75.14053.1 ID=prot_P-fluviatile_contig75.14053.1|Name=mRNA_P-fluviatile_contig75.14053.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=473bp
MQGASIELNLRFEDTVRKLEGSGDREARDAMLQLTREFKRLNDGLVKRLA
RISIINRTLVEILEKSQDGKAALTMRKAAELLVKGLANAEEEVNSLKATL
REVEGQRDHYKALLAKTNAELENSHAYTQMSAAIGKNPDFSSLATASAAT
SSHPGGAAATGVDTSGMRRHTGQGKGPARRGQRQKTTAAAGASASASRTI
SAGGGGSGDGSVRNSGVSESPGGTSATQGGDQCSSAVAPPGTARSAGKIK
GQAAAAPAAAAEGSRAFESGAAGWKKGRFAAAAGGDVAGADSTASADRIS
RTRKKEAAAAVSVSAAGSGGCGASKGGCDASKRRQRGAPGSIGAPGSNIG
SANNEEGAGEQEDGRRGGGKGDSVSHEIGSFEDRDKESNEGSRRTISRLA
GARGGIRPGASTGSSQDRLRVVKVPVPAVEPDACSGGGDGMGGSGEVGAS
RGDDGSDLNSVYDSDDAPSMFF*
back to top

mRNA from alignment at P-fluviatile_contig75:571452..574090-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig75.14053.1 ID=mRNA_P-fluviatile_contig75.14053.1|Name=mRNA_P-fluviatile_contig75.14053.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2639bp|location=Sequence derived from alignment at P-fluviatile_contig75:571452..574090- (Porterinema fluviatile SAG_2381)
CCTGGGTCACCTAGAGCATTCTCTTGCGCTGTGCGAGAGAGGCCACATTC
GCGGGACGGGCCCTGAAAAGAATATTGGCCATGGTGAGATGGAGTTTGGG
GATGGGCCTATGGCATGGCCTAAAGACGCCCGCGTATGGGTGAGGAAGAG
GTTGCTTGTCGGTTGTGCATCTGCGTTGTTCTGTTGAATGGAAAGGCCCA
TGATCCCACACCTCGTGAGACAAAGCCCATCAAACGTTGTCGGAAAGATA
CTGAAACAGTTCCTATGTTAAATGCAATCCGGCGATTTGCTTTAGGCGCT
CTCTCGCGCGCCTCAACGGCAGGAGCCAGCCCCTCAGCAGCAGCACGGCG
GCGGCGGCAGCTCCAGCACCAGCGCCGGTGAAGGCGCACAACTCGCTGAG
GAGTCAGTCGACCTCCGAATAGAGGGCCACAGCATGCAAGGGGCCAGCAT
CGAGCTGAACCTGCGGTTCGAGGACACCGTCCGGAAACTGGAGGGCAGTG
GGGACCGCGAGGCCAGGGATGCGATGCTGCAGCTCACGCGAGAGTTCAAG
CGCCTCAACGACGGCCTGGTGAAGAGGCTCGCCCGGATATCGATTATCAA
CCGGACATTGGTGGAGATCCTGGAGAAGAGCCAGGATGGCAAGGCTGCGC
TCACCATGCGCAAGGCTGCTGAGCTTCTGGTGAAGGTGTGCGTTCCGGTT
GATGCAACGAACATTGGTCAACGCGGCAGATGCCTGCGTGGTATCCATCA
CGGAAAACGAAAGGCTTGTCGAAGATGTTCGCAGGCGGTTCCATATCTCC
GTAGGATGGTTCTCTGTTTTTTTTCGAGGCTTTATCAACAAAGGAGATGA
TCCCCTGTGAGAATTCATACAATGCCTTGCCTTCGCACGGCAGCAATATC
ATGTTCAGCCCACCTAACGTGAGAAACGTAACACAACATGTGCGTGTCCG
TTCAAACACTCGACAGTTCGCATTTGGCTCGAACACACGACACGCGCCGA
CCGACCGTCGCCCACGACGGTAGTCGGGCGCAGTTTGTTCGAGGAAACCC
CACTTGTGCGGTTTTGGCCGAAACGCTTTTCGTGACGCTCTCTGCGTTAC
CGCTGGCACAACAAGCTTAACGTCTTCAGGCCGAGCGGCTGGCTCATCAG
GGAGCGAGATTTTTTGGCATTCGACGTTCCAGAAATGTTTTTCTTGAGAA
TGGCCCGACCATGCCAACCCCATCGCTCCTCTTCTTTTATCCATTGCTCG
CGCCTCTCCTGTGATCAGGGTTTGGCAAACGCGGAGGAAGAGGTCAACTC
CCTCAAGGCAACTCTCCGAGAGGTCGAGGGACAGCGCGACCACTACAAGG
CCCTCCTCGCGAAGACAAACGCCGAGCTCGAGAACTCCCACGCGTACACC
CAAATGAGCGCGGCCATCGGGAAAAACCCGGACTTCTCATCCTTGGCGAC
GGCCTCGGCCGCCACCTCTTCTCATCCCGGCGGGGCGGCAGCGACAGGCG
TGGATACGTCGGGGATGCGAAGGCATACCGGCCAGGGGAAAGGTCCCGCC
CGGCGAGGTCAGCGGCAGAAAACGACGGCCGCAGCTGGTGCCTCCGCGTC
GGCCTCTCGGACAATATCTGCAGGCGGTGGCGGTAGCGGTGACGGTAGCG
TTAGAAACTCCGGCGTATCCGAATCACCGGGTGGCACGAGCGCTACGCAG
GGCGGGGACCAATGCAGCAGCGCTGTAGCGCCGCCCGGAACGGCGAGAAG
TGCTGGGAAAATAAAAGGACAGGCCGCCGCCGCCCCAGCGGCCGCGGCGG
AAGGGTCTCGGGCATTTGAATCGGGTGCGGCGGGTTGGAAAAAGGGCCGC
TTTGCCGCGGCGGCCGGCGGTGATGTCGCCGGCGCCGACTCGACGGCGTC
AGCGGACAGGATATCACGAACACGCAAGAAAGAAGCTGCCGCGGCTGTGA
GCGTATCCGCAGCGGGTAGTGGTGGTTGTGGCGCCTCCAAAGGTGGTTGT
GACGCCTCCAAGCGGAGGCAGCGAGGTGCACCAGGCTCTATTGGCGCTCC
CGGCAGTAACATTGGTTCAGCCAACAACGAGGAAGGGGCGGGGGAGCAGG
AGGATGGGCGGAGAGGCGGTGGCAAGGGCGACAGCGTTAGTCACGAAATC
GGCTCGTTCGAAGATCGCGACAAAGAATCGAACGAAGGGAGCCGTCGAAC
AATATCCAGGCTTGCAGGCGCAAGAGGAGGGATAAGACCAGGGGCATCAA
CAGGAAGTAGTCAAGACAGGCTACGCGTGGTGAAGGTGCCGGTGCCAGCT
GTAGAGCCGGATGCGTGTAGCGGAGGCGGCGATGGGATGGGCGGGAGTGG
TGAGGTCGGTGCTTCGAGAGGCGATGACGGCAGCGACCTCAACAGTGTGT
ACGATTCGGATGATGCGCCGTCAATGTTTTTTTGAGCCCAGGTGCTCTTG
CAATGGTGTGCGGTTTTCATCACCAGGAAGTTCTCCACACCACAAGATGT
TGGGCGCGTTGTGGGTGTTTTTGTATCGAATTTTTGGAATTCAGCTTTGG
TTGTGCGTTAGTGTTGTCCTTCGTGGTGACGATCGCTTTTGTATTCAGAT
CGCGGGAACGACACACGACATACCCGTCGAAGAAGGCCT
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig75:571452..574090-

>mRNA_P-fluviatile_contig75.14053.1 ID=mRNA_P-fluviatile_contig75.14053.1|Name=mRNA_P-fluviatile_contig75.14053.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2838bp|location=Sequence derived from alignment at P-fluviatile_contig75:571452..574090- (Porterinema fluviatile SAG_2381)
ATGCAAGGGGCCAGCATCGAGCTGAACCTGCGGTTCGAGGACACCGTCCG
GAAACTGGAGGGCAGTGGGGACCGCGAGGCCAGGGATGCGATGCTGCAGC
TCACGCGAGAGTTCAAGCGCCTCAACGACGGCCTGGTGAAGAGGCTCGCC
CGGATATCGATTATCAACCGGACATTGGTGGAGATCCTGGAGAAGAGCCA
GGATGGCAAGGCTGCGCTCACCATGCGCAAGGCTGCTGAGCTTCTGGTGA
AGATGCAAGGGGCCAGCATCGAGCTGAACCTGCGGTTCGAGGACACCGTC
CGGAAACTGGAGGGCAGTGGGGACCGCGAGGCCAGGGATGCGATGCTGCA
GCTCACGCGAGAGTTCAAGCGCCTCAACGACGGCCTGGTGAAGAGGCTCG
CCCGGATATCGATTATCAACCGGACATTGGTGGAGATCCTGGAGAAGAGC
CAGGATGGCAAGGCTGCGCTCACCATGCGCAAGGCTGCTGAGCTTCTGGT
GAAGGGTTTGGCAAACGCGGAGGAAGAGGTCAACTCCCTCAAGGCAACTC
TCCGAGAGGTCGAGGGACAGCGCGACCACTACAAGGCCCTCCTCGCGAAG
ACAAACGCCGAGCTCGAGAACTCCCACGCGTACACCCAAATGAGCGCGGC
CATCGGGAAAAACCCGGACTTCTCATCCTTGGCGACGGCCTCGGCCGCCA
CCTCTTCTCATCCCGGCGGGGCGGCAGCGACAGGCGTGGATACGTCGGGG
ATGCGAAGGCATACCGGCCAGGGGAAAGGTCCCGCCCGGCGAGGTCAGCG
GCAGAAAACGACGGCCGCAGCTGGTGCCTCCGCGTCGGCCTCTCGGACAA
TATCTGCAGGCGGTGGCGGTAGCGGTGACGGTAGCGTTAGAAACTCCGGC
GTATCCGAATCACCGGGTGGCACGAGCGCTACGCAGGGCGGGGACCAATG
CAGCAGCGCTGTAGCGCCGCCCGGAACGGCGAGAAGTGCTGGGAAAATAA
AAGGACAGGCCGCCGCCGCCCCAGCGGCCGCGGCGGAAGGGTCTCGGGCA
TTTGAATCGGGTGCGGCGGGTTGGAAAAAGGGCCGCTTTGCCGCGGCGGC
CGGCGGTGATGTCGCCGGCGCCGACTCGACGGCGTCAGCGGACAGGATAT
CACGAACACGCAAGAAAGAAGCTGCCGCGGCTGTGAGCGTATCCGCAGCG
GGTAGTGGTGGTTGTGGCGCCTCCAAAGGTGGTTGTGACGCCTCCAAGCG
GAGGCAGCGAGGTGCACCAGGCTCTATTGGCGCTCCCGGCAGTAACATTG
GTTCAGCCAACAACGAGGAAGGGGCGGGGGAGCAGGAGGATGGGCGGAGA
GGCGGTGGCAAGGGCGACAGCGTTAGTCACGAAATCGGCTCGTTCGAAGA
TCGCGACAAAGAATCGAACGAAGGGAGCCGTCGAACAATATCCAGGCTTG
CAGGCGCAAGAGGAGGGATAAGACCAGGGGCATCAACAGGAAGTAGTCAA
GACAGGCTACGCGTGGTGAAGGTGCCGGTGCCAGCTGTAGAGCCGGATGC
GTGTAGCGGAGGCGGCGATGGGATGGGCGGGAGTGGTGAGGTCGGTGCTT
CGAGAGGCGATGACGGCAGCGACCTCAACAGTGTGTACGATTCGGATGAT
GCGCCGTCAATGTTTTTTTGAGGTTTGGCAAACGCGGAGGAAGAGGTCAA
CTCCCTCAAGGCAACTCTCCGAGAGGTCGAGGGACAGCGCGACCACTACA
AGGCCCTCCTCGCGAAGACAAACGCCGAGCTCGAGAACTCCCACGCGTAC
ACCCAAATGAGCGCGGCCATCGGGAAAAACCCGGACTTCTCATCCTTGGC
GACGGCCTCGGCCGCCACCTCTTCTCATCCCGGCGGGGCGGCAGCGACAG
GCGTGGATACGTCGGGGATGCGAAGGCATACCGGCCAGGGGAAAGGTCCC
GCCCGGCGAGGTCAGCGGCAGAAAACGACGGCCGCAGCTGGTGCCTCCGC
GTCGGCCTCTCGGACAATATCTGCAGGCGGTGGCGGTAGCGGTGACGGTA
GCGTTAGAAACTCCGGCGTATCCGAATCACCGGGTGGCACGAGCGCTACG
CAGGGCGGGGACCAATGCAGCAGCGCTGTAGCGCCGCCCGGAACGGCGAG
AAGTGCTGGGAAAATAAAAGGACAGGCCGCCGCCGCCCCAGCGGCCGCGG
CGGAAGGGTCTCGGGCATTTGAATCGGGTGCGGCGGGTTGGAAAAAGGGC
CGCTTTGCCGCGGCGGCCGGCGGTGATGTCGCCGGCGCCGACTCGACGGC
GTCAGCGGACAGGATATCACGAACACGCAAGAAAGAAGCTGCCGCGGCTG
TGAGCGTATCCGCAGCGGGTAGTGGTGGTTGTGGCGCCTCCAAAGGTGGT
TGTGACGCCTCCAAGCGGAGGCAGCGAGGTGCACCAGGCTCTATTGGCGC
TCCCGGCAGTAACATTGGTTCAGCCAACAACGAGGAAGGGGCGGGGGAGC
AGGAGGATGGGCGGAGAGGCGGTGGCAAGGGCGACAGCGTTAGTCACGAA
ATCGGCTCGTTCGAAGATCGCGACAAAGAATCGAACGAAGGGAGCCGTCG
AACAATATCCAGGCTTGCAGGCGCAAGAGGAGGGATAAGACCAGGGGCAT
CAACAGGAAGTAGTCAAGACAGGCTACGCGTGGTGAAGGTGCCGGTGCCA
GCTGTAGAGCCGGATGCGTGTAGCGGAGGCGGCGATGGGATGGGCGGGAG
TGGTGAGGTCGGTGCTTCGAGAGGCGATGACGGCAGCGACCTCAACAGTG
TGTACGATTCGGATGATGCGCCGTCAATGTTTTTTTGA
back to top