mRNA_P-fluviatile_contig75.14020.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig75.14020.1
Unique NamemRNA_P-fluviatile_contig75.14020.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig75.14020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig75contigP-fluviatile_contig75:240467..240985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size520
Cds size474
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817183.103394-CDS-P-fluviatile_contig75:240466..2409401622817183.103394-CDS-P-fluviatile_contig75:240466..240940Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 240467..240940 +
1693571416.0838041-CDS-P-fluviatile_contig75:240466..2409401693571416.0838041-CDS-P-fluviatile_contig75:240466..240940Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 240467..240940 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817183.1162457-UTR-P-fluviatile_contig75:240940..2409851622817183.1162457-UTR-P-fluviatile_contig75:240940..240985Porterinema fluviatile SAG_2381UTRP-fluviatile_contig75 240941..240985 +
1693571416.0969284-UTR-P-fluviatile_contig75:240940..2409851693571416.0969284-UTR-P-fluviatile_contig75:240940..240985Porterinema fluviatile SAG_2381UTRP-fluviatile_contig75 240941..240985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig75.14020.1prot_P-fluviatile_contig75.14020.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig75 240467..240940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig75.14020.1

>prot_P-fluviatile_contig75.14020.1 ID=prot_P-fluviatile_contig75.14020.1|Name=mRNA_P-fluviatile_contig75.14020.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=158bp
NELKVPKDRTRTIESCQTGPSIVHRRQTRRSVSGDWKPSAVKVFGEHSCD
RQIIGGDVDHISPRKRKTIQEGDTPIDSVRALSLLPTAGHARRRAFRNCP
SWGPLPYPCFTDNAQQRGENNPFAVFMHFSQGPTMLSTAILRAQNLHAFT
GPGPSHL*
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mRNA from alignment at P-fluviatile_contig75:240467..240985+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig75.14020.1 ID=mRNA_P-fluviatile_contig75.14020.1|Name=mRNA_P-fluviatile_contig75.14020.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=519bp|location=Sequence derived from alignment at P-fluviatile_contig75:240467..240985+ (Porterinema fluviatile SAG_2381)
AACGAGCTCAAAGTGCCAAAAGATCGGACAAGAACAATCGAATCGTGCCA
GACCGGGCCATCAATCGTTCATCGGCGCCAAACACGACGGAGCGTAAGCG
GCGATTGGAAGCCAAGTGCAGTCAAGGTTTTTGGCGAGCATTCATGCGAC
CGGCAGATTATCGGCGGTGATGTTGACCACATCTCGCCAAGGAAAAGAAA
AACAATCCAAGAGGGGGACACACCGATCGATTCAGTTCGTGCACTCTCTC
TTCTGCCTACTGCCGGCCATGCTCGACGCCGTGCATTCCGGAACTGTCCT
TCCTGGGGTCCACTGCCCTACCCATGCTTTACCGACAATGCACAACAACG
AGGCGAAAACAACCCTTTCGCCGTTTTTATGCATTTTTCCCAAGGCCCGA
CCATGCTTTCCACCGCAATACTGCGAGCTCAGAACCTGCACGCATTCACC
GGCCCAGGCCCAAGTCATCTGTAGCCCGTGCCCCTATCTTATCCCGGGGT
GcccCCCCCTGTCTGCTCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig75:240467..240985+

>mRNA_P-fluviatile_contig75.14020.1 ID=mRNA_P-fluviatile_contig75.14020.1|Name=mRNA_P-fluviatile_contig75.14020.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=948bp|location=Sequence derived from alignment at P-fluviatile_contig75:240467..240985+ (Porterinema fluviatile SAG_2381)
AACGAGCTCAAAGTGCCAAAAGATCGGACAAGAACAATCGAATCGTGCCA
GACCGGGCCATCAATCGTTCATCGGCGCCAAACACGACGGAGCGTAAGCG
GCGATTGGAAGCCAAGTGCAGTCAAGGTTTTTGGCGAGCATTCATGCGAC
CGGCAGATTATCGGCGGTGATGTTGACCACATCTCGCCAAGGAAAAGAAA
AACAATCCAAGAGGGGGACACACCGATCGATTCAGTTCGTGCACTCTCTC
TTCTGCCTACTGCCGGCCATGCTCGACGCCGTGCATTCCGGAACTGTCCT
TCCTGGGGTCCACTGCCCTACCCATGCTTTACCGACAATGCACAACAACG
AGGCGAAAACAACCCTTTCGCCGTTTTTATGCATTTTTCCCAAGGCCCGA
CCATGCTTTCCACCGCAATACTGCGAGCTCAGAACCTGCACGCATTCACC
GGCCCAGGCCCAAGTCATCTGTAGAACGAGCTCAAAGTGCCAAAAGATCG
GACAAGAACAATCGAATCGTGCCAGACCGGGCCATCAATCGTTCATCGGC
GCCAAACACGACGGAGCGTAAGCGGCGATTGGAAGCCAAGTGCAGTCAAG
GTTTTTGGCGAGCATTCATGCGACCGGCAGATTATCGGCGGTGATGTTGA
CCACATCTCGCCAAGGAAAAGAAAAACAATCCAAGAGGGGGACACACCGA
TCGATTCAGTTCGTGCACTCTCTCTTCTGCCTACTGCCGGCCATGCTCGA
CGCCGTGCATTCCGGAACTGTCCTTCCTGGGGTCCACTGCCCTACCCATG
CTTTACCGACAATGCACAACAACGAGGCGAAAACAACCCTTTCGCCGTTT
TTATGCATTTTTCCCAAGGCCCGACCATGCTTTCCACCGCAATACTGCGA
GCTCAGAACCTGCACGCATTCACCGGCCCAGGCCCAAGTCATCTGTAG
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