mRNA_P-fluviatile_contig75.14008.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig75.14008.1
Unique NamemRNA_P-fluviatile_contig75.14008.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig75.14008.1 vs. uniprot
Match: D8LRE0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRE0_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 1.830e-76
Identity = 128/164 (78.05%), Postives = 144/164 (87.80%), Query Frame = 1 
Query:    1 MSEEAKTSDVTVTAPKPHMHADTAPKVDKYHQSAT-LPKVVPPRGSKDARSFRPSTLAEINMMNRYEPLEMKCGGKTYGIGCGNSLEDVLLICGCILALWSFILGVTGLLVKSAIDTDRGHTALWVYFWLFILGVGMLIGMIATGQVERFRNEAVEAEKQHEED 489
            MSEEAKT++V V+ PK  +HADT  +V K+ QS   +PKVVPPRGSKDARSFRPSTLAEINMMNRYEPLE+KCGGKT+GIGCGNSLEDVLLI GCILALWSF+LGV+GLL+KSAIDTD  HTALWVYFWLFILG  +L GMIATGQVERFR+E   AEKQH++D
Sbjct:    1 MSEEAKTNEVAVSMPKADIHADTQQEVSKFDQSKNPIPKVVPPRGSKDARSFRPSTLAEINMMNRYEPLELKCGGKTFGIGCGNSLEDVLLIMGCILALWSFVLGVSGLLLKSAIDTDLRHTALWVYFWLFILGCFLLGGMIATGQVERFRSERAAAEKQHDDD 164
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig75.14008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRE0_ECTSI1.830e-7678.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig75contigP-fluviatile_contig75:96839..101492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_002890.1
Exons2
Model size2316
Cds size516
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig75.14008.1prot_P-fluviatile_contig75.14008.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig75 96839..99692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817184.368713-CDS-P-fluviatile_contig75:96838..971911622817184.368713-CDS-P-fluviatile_contig75:96838..97191Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 96839..97191 +
1693571418.8953395-CDS-P-fluviatile_contig75:96838..971911693571418.8953395-CDS-P-fluviatile_contig75:96838..97191Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 96839..97191 +
1622817184.3798711-CDS-P-fluviatile_contig75:99529..996921622817184.3798711-CDS-P-fluviatile_contig75:99529..99692Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 99530..99692 +
1693571418.9079032-CDS-P-fluviatile_contig75:99529..996921693571418.9079032-CDS-P-fluviatile_contig75:99529..99692Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 99530..99692 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817184.39028-UTR-P-fluviatile_contig75:99692..1014921622817184.39028-UTR-P-fluviatile_contig75:99692..101492Porterinema fluviatile SAG_2381UTRP-fluviatile_contig75 99693..101492 +
1693571418.9249015-UTR-P-fluviatile_contig75:99692..1014921693571418.9249015-UTR-P-fluviatile_contig75:99692..101492Porterinema fluviatile SAG_2381UTRP-fluviatile_contig75 99693..101492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig75.14008.1

>prot_P-fluviatile_contig75.14008.1 ID=prot_P-fluviatile_contig75.14008.1|Name=mRNA_P-fluviatile_contig75.14008.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=172bp
MSEEAKTSDVTVTAPKPHMHADTAPKVDKYHQSATLPKVVPPRGSKDARS
FRPSTLAEINMMNRYEPLEMKCGGKTYGIGCGNSLEDVLLICGCILALWS
FILGVTGLLVKSAIDTDRGHTALWVYFWLFILGVGMLIGMIATGQVERFR
NEAVEAEKQHEEDEEKAALTA*
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mRNA from alignment at P-fluviatile_contig75:96839..101492+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig75.14008.1 ID=mRNA_P-fluviatile_contig75.14008.1|Name=mRNA_P-fluviatile_contig75.14008.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4654bp|location=Sequence derived from alignment at P-fluviatile_contig75:96839..101492+ (Porterinema fluviatile SAG_2381)
ATGTCTGAGGAAGCGAAGACCTCCGATGTCACCGTGACCGCCCCGAAGCC
CCACATGCACGCCGACACGGCGCCGAAGGTGGATAAGTACCACCAGAGCG
CGACGCTCCCTAAGGTCGTGCCCCCTCGCGGCTCCAAGGATGCCCGCTCG
TTCCGGCCCTCGACCCTCGCGGAGATCAACATGATGAACCGCTACGAGCC
GCTTGAGATGAAGTGCGGTGGCAAGACGTACGGGATCGGGTGCGGAAACT
CGTTGGAGGACGTGCTGCTCATCTGCGGATGCATCTTGGCGCTGTGGTCG
TTTATCCTGGGAGTGACGGGGCTGCTGGTCAAGTCGGCAATTGACACCGA
CAGGTAAGCAAATATGTCGTTGTTGGGAGGGTGTGTGCCATCCCCTCTCT
CTCACTCCCCCTCCGTCTCATTTGCGTCCTGCTGCTGAAGCATCGAAGTT
ACGATCGTTGGATAGGATGAGTGTGCACCTCGCGCTCTCCCCCCGTCTTC
GTGCACCCCTCGAAAACTCAATCACACACAATTTTCATTCAGAAAAGCAA
CACACAAGTTTTCCCAGCGCTCACAACACACAAGCGAGAACGAGGAGCAA
GGGGCGCTGTTGCTTTGAACGCAAGAGCACAGGATGGTTGCCTGTGATCA
CGCCAAGGCCGCATGCGCTCCCGCAATGATCTCCACGCAACGCTCCCGTC
CGATCCAGACCGGATGCGGATTGAAGCCCCCGAAAGCGCGCGGTGCGACC
GAAAACAGGCCGGCGAAGTCCGCTCCCTCTCCGTGTGTGTGTCATGCTCG
TTCGCACCGTTTCTCTCCCTTGATGGGTGGAAACACACGCGTAGAAAATT
GGAGGAGGGGGGCGAGGGAAGAAGACCGTAAGAAGACAGAAGTATTACTG
CTTGCCCGTGTCCGGTTGGTGCGGTGATCTCCGCAGCCCTAGCCACAGCG
CCCGACCAGGGAGACGAGTTTTTTTTGCCTCTTTCTGGGCATGGATGGAA
TCTGCTGGGGCAGCTCTCTCCCCTCTGTCGCTCTTTGGAAGCCTCCCCTC
TTGTGCGTCCTCCGTGAACGCCCTCTTTGTTGGTATCTTCAGGATACCTG
TTCCGCACTTGGAAAAGTGCAGCAAGCGCTGTACTGCCGTTGCCCTCTTC
CGGGGACTTTCGAATGCAAACCACTGTTGGGTCCAAAAAGTGCGGTTTAA
CGCCTACCAGGTACCAGGTACTTTTTGTTTTCGCACTGGAAGTGTGTGCC
TGTCGTCGATTTTGGAAGTATTCGAGGGCCCTCAACGACGTCCGACAAGC
TCGAACCTCCCTCGGGATTATTTGCCAGCCCACGCTCCCTGGGAAGTCAG
CACTACACTCAACGTCGGCTGTCGCGGGAGCGTGAAACACAGTCGCACCC
TCAACAAGTACCGATTCATTGGTGCTTATCCACGTCGGTTGATTCGGCGC
GGGTTGAAAGCCTCTCACGCATTCGTGAAGCATGACACCAACGAGAGACA
GTTTTGAATCTCTCTCCCTCGCTCTCTCACAATATCCTCCACAACATCAT
CGCGGCGTGTTTTTTGAGCCCTTACCCTTGGTTGCACGCGTGCGGATATC
GGTGTTTAATCAAGACGGCGACGAGCAGGGTGTTCCCAGTGTTGTCTCGC
CGGCACATGGGATGACACCAGTAGCGGCTGTTTCCTCACCGAGACCACGT
AAAAATACGCTCAAACATATGAAACACAGGCTGCTTGTTGCTGATTCCGG
TTCAGCACGTCCAAAATTGCGCGGCGTATAAACACAATCGCTCAAGGGTG
GAAGTACGGCATGTGATTGAGCGGAAATGGACACATGGTGGAATCCAGTG
ACCGCCTATCTACGTAATATCTGTCCCGATGTGAGCTTACACAAGAACGC
CCTAAAGGCGGGGGGAGCTACGTCGTTCTTTTCGACGCGCGATAACCCCG
CCAAATGTCGACCAAGCATCGTTTCTGGACTCCTGATAGAAGGTACCACC
ACCCTCTCGGCACCCTCCAGTTTCACACACGCGGTACACGTTCCTTTCAG
GATTCGACCGTTGCCGGATGCTACAAGAGTTCGTCCGTGTTGGATTAGAT
AGAAATGGCATCGGCAACGGCACCGTCGTTGTCCCGTTGTTCCGGGTTCC
TCGCCGCACAAAACCAGCACATGCGGCCAAATCCTAGCGGAGCGGTGGCT
CACAGTGTGACATGTCTTTCGCGCGCCCCCCTCAAACGTGCACGCGCCAC
GTGTCACGTGTTTTCTTTGGTCACATCCAAGTCTTGATGTCTCGACCACC
TCTTTGGGCCTTGTGCCAACATCGTGCTCAACACTTGAAAACCAAAGCGA
AGCGACCATGCGTTCCCCTCCCCCTTCTGGCGCTGCTTGCACGATTTATT
CCCTTTGCGCCCACTATTCTGCACTTCGCCACCCGCATCCAGATGCACAG
AAGCCCCTTGCAAAACGCCGGAAGGGCCTTCCCCTGTTGCCTCCCCCTTT
ACCCTCCCTCCCTTCCAAATCTTGTCACTGCCTACGTGACCCCCGGCGTC
ATGGTTGCCCTTCACCTGTTAAACGTCGCGCGATTGCCCGCTTCCCTCGC
TCCCTCCCTCCCTTTCTCCCATTCCTGCCCCCGCCACTGTCGCTGCCGAC
AAAAACGCCGCGAAACACATGAAAAACTCAACTTGGAGCAGGGGGCACAC
CGCGCTTTGGGTGTACTTCTGGTTGTTCATCCTCGGCGTCGGCATGCTGA
TCGGCATGATCGCGACCGGACAGGTGGAGCGCTTCCGTAACGAGGCGGTG
GAAGCCGAGAAGCAGCACGAAGAGGACGAGGAGAAGGCGGCCCTGACCGC
CTAAGCAGAACAAGAGCAGGAAACGGCTCTCGCGAGAACACGTGTAAAAA
AAAAAACGAGGAGAGCGCCGTAAAGATTGGAAGTGACGAGCGCGAGAGCC
GGGTTTTGATCCCACCGGCAACGCGGGCCGGGGGGTATGGAGCAGGTAGT
TGGTATTTTTTTCCCCTGGGCGTCTCTCTGAGCTGAAGTAGCTCTCTCAC
TCATCTGACATTAAGGCGTGTGTGCCCTTGAAGCGCGCGAGTTTACGCGT
TCATCCGCCTTGATCGGCTCGCCTCTGCTCTAGCACATTATTCCCGTCGT
CCCAGCGCGCTTTGCCCGCTGGGCAAGCTTAATAATGTTCTTAGTCCCCT
CTTCTTTTTGTGCGAGTGGTCGAGCTGAGCTTGTCATATCCGCTTTTCCA
TTGAGCTCGAAACGAAGAGCTGATCCTTTCTGTGGACTCGCGCGTAGGAT
GGCAGGAAAGAGGGCTACAAGTCGGGAGCCAGATGCTGTTTGCGGTGTCG
CGGCGTCGGGCCGCGACTTAAAAGAACACAAGCATCACGTGGGAAAGAGG
AGACTTCGTTTTACTTTTTGTTTTGAAGCGAGGGAGGGAGGCAGAGCGGG
AGTGTTGGGTTTTTGAGAGCGTACCGATTGGATGGGAATAGGGGCCTAAG
GGACCAGAAGGAGGCGCTTCGATGCCCTCACACTAGCGAGAATGCCAAGG
ACCGCAGACCCGCCGCAGCCAAGGCAGTGCTTCTGCAGGTCTAGACGCAC
ATGCTCGAGACTGTGATGGAGGGATGTCGGCTTCCGATGCCGCCGGGGTT
TTCGGGGCCAAGCACCTCGCGTGGAAAATGCGATTGCGGCCAGACAAGCC
TCTGTTTTAATATCGAATTAGGCTTGAATTCAAGTCTCTTTTTGTTTTGT
CGTTTCACGAAGGGGCTCGGAAACAACGATGGCGGAAGCGGAAGCATTGG
CTTTTCAGGAATACCCTGCCTATCTACAACAGAGTATGATTTTTTCTTTT
GGAGGGGGGGGTAAAGGTGCATGATCTCGAAAACTGCTTGCTGTCGTTGT
GGGCGCCGGCTGATGGCGGCGGAAGAAAGGAGTCCATCGACCTAATATCC
CGCACACGGAGACATTAAATGCAGTGCGTCAAGGAATGGATTGATTGGTA
GTGGCCGCCCCCGATGTTTCAAGTGACAGGCACTCTGACTTTTTTAGTGG
CAACCAACCGTCGAAGCCCCCTTCTTGAGCGGAGGCTACACAGTTTTACG
GGCTGGGTGGGGGAGGTGTTTGCACCCGTCCGTGACAGGGGTGCATCGTC
GGGCTCATGATGGGATGTTCCCGGTCTCCGCGTCTGCTGCCTCGGTCAAA
GGACGGACGCGAATCGATCCTTTGCATCCCTTGAAATGGTCTTGGGATGA
TGAACCACGCCTGCCTTGGTGTGCTTTCCGTCTGTTCGTGGGCGGCGGGG
TGTGAGAATTTCTGTCTCCGAAACTGACTGGGTGGCAAGAAACCACTGTA
GGACGGAAACTAAAGCAGCCCCCTCGCGCTCCAAGGATGTTCTAGTTACG
CCACTCAAGCCTCAAAGGGGAGCACGGCCGCCAAGTGTAGCCCATGTCCA
GACAGGGTAGCAATGCGAACGAAGAACGAGATTTTGACATTCGAGCCTAG
AACCACATAAGCCCTATTGAGAACCTTGACCTCACAAGGAAAGTGGTGTT
ACGCGAGAAAGCACTTTCGTTCATTCAAGTGGTAGACTGCTGTAGGTGTA
AACCGCGGGTCGATGGTTTATGTATCTCAGGGCGTTCTTCATCTACGAAT
GCAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig75:96839..101492+

>mRNA_P-fluviatile_contig75.14008.1 ID=mRNA_P-fluviatile_contig75.14008.1|Name=mRNA_P-fluviatile_contig75.14008.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1032bp|location=Sequence derived from alignment at P-fluviatile_contig75:96839..101492+ (Porterinema fluviatile SAG_2381)
ATGTCTGAGGAAGCGAAGACCTCCGATGTCACCGTGACCGCCCCGAAGCC
CCACATGCACGCCGACACGGCGCCGAAGGTGGATAAGTACCACCAGAGCG
CGACGCTCCCTAAGGTCGTGCCCCCTCGCGGCTCCAAGGATGCCCGCTCG
TTCCGGCCCTCGACCCTCGCGGAGATCAACATGATGAACCGCTACGAGCC
GCTTGAGATGAAGTGCGGTGGCAAGACGTACGGGATCGGGTGCGGAAACT
CGTTGGAGGACGTGCTGCTCATCTGCGGATGCATCTTGGCGCTGTGGTCG
TTTATCCTGGGAGTGACGGGGCTGCTGGTCAAGTCGGCAATTGACACCGA
CAGATGTCTGAGGAAGCGAAGACCTCCGATGTCACCGTGACCGCCCCGAA
GCCCCACATGCACGCCGACACGGCGCCGAAGGTGGATAAGTACCACCAGA
GCGCGACGCTCCCTAAGGTCGTGCCCCCTCGCGGCTCCAAGGATGCCCGC
TCGTTCCGGCCCTCGACCCTCGCGGAGATCAACATGATGAACCGCTACGA
GCCGCTTGAGATGAAGTGCGGTGGCAAGACGTACGGGATCGGGTGCGGAA
ACTCGTTGGAGGACGTGCTGCTCATCTGCGGATGCATCTTGGCGCTGTGG
TCGTTTATCCTGGGAGTGACGGGGCTGCTGGTCAAGTCGGCAATTGACAC
CGACAGGGGGCACACCGCGCTTTGGGTGTACTTCTGGTTGTTCATCCTCG
GCGTCGGCATGCTGATCGGCATGATCGCGACCGGACAGGTGGAGCGCTTC
CGTAACGAGGCGGTGGAAGCCGAGAAGCAGCACGAAGAGGACGAGGAGAA
GGCGGCCCTGACCGCCTAAGGGGCACACCGCGCTTTGGGTGTACTTCTGG
TTGTTCATCCTCGGCGTCGGCATGCTGATCGGCATGATCGCGACCGGACA
GGTGGAGCGCTTCCGTAACGAGGCGGTGGAAGCCGAGAAGCAGCACGAAG
AGGACGAGGAGAAGGCGGCCCTGACCGCCTAA
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