mRNA_P-fluviatile_contig74.13986.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig74.13986.1
Unique NamemRNA_P-fluviatile_contig74.13986.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig74.13986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig74contigP-fluviatile_contig74:496731..497175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size446
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817177.7857726-CDS-P-fluviatile_contig74:496730..4970961622817177.7857726-CDS-P-fluviatile_contig74:496730..497096Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 496731..497096 +
1693571395.4974034-CDS-P-fluviatile_contig74:496730..4970961693571395.4974034-CDS-P-fluviatile_contig74:496730..497096Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 496731..497096 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817177.7983074-UTR-P-fluviatile_contig74:497096..4971751622817177.7983074-UTR-P-fluviatile_contig74:497096..497175Porterinema fluviatile SAG_2381UTRP-fluviatile_contig74 497097..497175 +
1693571395.5050542-UTR-P-fluviatile_contig74:497096..4971751693571395.5050542-UTR-P-fluviatile_contig74:497096..497175Porterinema fluviatile SAG_2381UTRP-fluviatile_contig74 497097..497175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig74.13986.1prot_P-fluviatile_contig74.13986.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig74 496731..497096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig74.13986.1

>prot_P-fluviatile_contig74.13986.1 ID=prot_P-fluviatile_contig74.13986.1|Name=mRNA_P-fluviatile_contig74.13986.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=122bp
GPLRGCLPPPPLHRDSARSGGFHAVQRHSGAFSGPVRRGRGRGDEVAAVV
SAVAAPAAPAALAATFHCPYHPPPLVVRRLIFVRWRRRRRRCPRGNPTPP
LLVVWAACVRGHGGGACGATA*
back to top

mRNA from alignment at P-fluviatile_contig74:496731..497175+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig74.13986.1 ID=mRNA_P-fluviatile_contig74.13986.1|Name=mRNA_P-fluviatile_contig74.13986.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=445bp|location=Sequence derived from alignment at P-fluviatile_contig74:496731..497175+ (Porterinema fluviatile SAG_2381)
GGCCCCTTGCGCGGCTGTCTCCCACCGCCTCCCCTTCACCGGGACAGCGC
CAGGAGCGGGGGTTTCCACGCCGTACAACGGCATTCCGGGGCGTTCTCGG
GACCGGTTCGGAGGGGGAGGGGTCGAGGGGACGAGGTAGCTGCTGTTGTG
AGTGCTGTTGCTGCTCCTGCTGCTCCTGCTGCCCTTGCCGCCACCTTTCA
CTGTCCCTACCACCCGCCACCCCTCGTCGTCCGGCGTCTTATCTTCGTCC
GCTGGAGGCGGCGCCGTCGGCGGTGTCCGCGGGGGAATCCCACGCCGCCG
CTCTTGGTGGTGTGGGCCGCCTGCGTTAGAGGCCACGGCGGCGGCGCCTG
CGGCGCCACCGCTTGAGCGAACGGGAGTGGACCACGCTGGCGTGCCGCCA
ACCCGACTGCCACTGCTCCCACCCCCGCCATTACCGCCGCTACCT
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig74:496731..497175+

>mRNA_P-fluviatile_contig74.13986.1 ID=mRNA_P-fluviatile_contig74.13986.1|Name=mRNA_P-fluviatile_contig74.13986.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=732bp|location=Sequence derived from alignment at P-fluviatile_contig74:496731..497175+ (Porterinema fluviatile SAG_2381)
GGCCCCTTGCGCGGCTGTCTCCCACCGCCTCCCCTTCACCGGGACAGCGC
CAGGAGCGGGGGTTTCCACGCCGTACAACGGCATTCCGGGGCGTTCTCGG
GACCGGTTCGGAGGGGGAGGGGTCGAGGGGACGAGGTAGCTGCTGTTGTG
AGTGCTGTTGCTGCTCCTGCTGCTCCTGCTGCCCTTGCCGCCACCTTTCA
CTGTCCCTACCACCCGCCACCCCTCGTCGTCCGGCGTCTTATCTTCGTCC
GCTGGAGGCGGCGCCGTCGGCGGTGTCCGCGGGGGAATCCCACGCCGCCG
CTCTTGGTGGTGTGGGCCGCCTGCGTTAGAGGCCACGGCGGCGGCGCCTG
CGGCGCCACCGCTTGAGGCCCCTTGCGCGGCTGTCTCCCACCGCCTCCCC
TTCACCGGGACAGCGCCAGGAGCGGGGGTTTCCACGCCGTACAACGGCAT
TCCGGGGCGTTCTCGGGACCGGTTCGGAGGGGGAGGGGTCGAGGGGACGA
GGTAGCTGCTGTTGTGAGTGCTGTTGCTGCTCCTGCTGCTCCTGCTGCCC
TTGCCGCCACCTTTCACTGTCCCTACCACCCGCCACCCCTCGTCGTCCGG
CGTCTTATCTTCGTCCGCTGGAGGCGGCGCCGTCGGCGGTGTCCGCGGGG
GAATCCCACGCCGCCGCTCTTGGTGGTGTGGGCCGCCTGCGTTAGAGGCC
ACGGCGGCGGCGCCTGCGGCGCCACCGCTTGA
back to top