mRNA_P-fluviatile_contig74.13982.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig74.13982.1
Unique NamemRNA_P-fluviatile_contig74.13982.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig74.13982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig74contigP-fluviatile_contig74:452687..453366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size680
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig74.13982.1prot_P-fluviatile_contig74.13982.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig74 452718..453224 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817177.7277918-UTR-P-fluviatile_contig74:452686..4527171622817177.7277918-UTR-P-fluviatile_contig74:452686..452717Porterinema fluviatile SAG_2381UTRP-fluviatile_contig74 452687..452717 +
1693571395.473763-UTR-P-fluviatile_contig74:452686..4527171693571395.473763-UTR-P-fluviatile_contig74:452686..452717Porterinema fluviatile SAG_2381UTRP-fluviatile_contig74 452687..452717 +
1622817177.7486691-UTR-P-fluviatile_contig74:453224..4533661622817177.7486691-UTR-P-fluviatile_contig74:453224..453366Porterinema fluviatile SAG_2381UTRP-fluviatile_contig74 453225..453366 +
1693571395.489593-UTR-P-fluviatile_contig74:453224..4533661693571395.489593-UTR-P-fluviatile_contig74:453224..453366Porterinema fluviatile SAG_2381UTRP-fluviatile_contig74 453225..453366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817177.737639-CDS-P-fluviatile_contig74:452717..4532241622817177.737639-CDS-P-fluviatile_contig74:452717..453224Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 452718..453224 +
1693571395.4817939-CDS-P-fluviatile_contig74:452717..4532241693571395.4817939-CDS-P-fluviatile_contig74:452717..453224Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 452718..453224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig74.13982.1

>prot_P-fluviatile_contig74.13982.1 ID=prot_P-fluviatile_contig74.13982.1|Name=mRNA_P-fluviatile_contig74.13982.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=169bp
MVNSKRMERRRFIGEIREREVTLSESTRAREGAGDLKSASLAFCLGKHTI
PNEVGAAQSKWARDAFRQGGPARVVEGRTHDKLENRFNTFSRSLVHFSLP
LVFPVSALRKVAHSLLSLPELNKHTYLFLSLSLFPLSSAVVLHLSFPLPR
AGPHTGALNREIFTTRAL*
back to top

mRNA from alignment at P-fluviatile_contig74:452687..453366+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig74.13982.1 ID=mRNA_P-fluviatile_contig74.13982.1|Name=mRNA_P-fluviatile_contig74.13982.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=680bp|location=Sequence derived from alignment at P-fluviatile_contig74:452687..453366+ (Porterinema fluviatile SAG_2381)
GGCGCTGGGACAACGACGTTCATCTCCAAAAATGGTTAACTCAAAACGGA
TGGAACGTCGTCGGTTCATCGGAGAGATAAGGGAGAGGGAGGTGACACTT
TCTGAAAGCACACGGGCCCGCGAAGGGGCAGGGGACCTAAAATCTGCCTC
TCTTGCTTTTTGTCTGGGAAAACATACCATACCCAACGAAGTAGGAGCGG
CACAATCCAAATGGGCCCGCGACGCGTTCCGCCAGGGAGGACCAGCGAGG
GTGGTCGAGGGTAGAACCCACGACAAACTCGAGAATCGCTTCAATACATT
CAGTAGATCTCTTGTCCATTTTTCGCTACCCCTGGTATTTCCTGTCAGCG
CTCTTCGAAAAGTCGCGCACTCACTTCTCTCTCTCCCTGAGCTCAACAAG
CACACCTACCTTTTTCTATCTCTCTCCCTCTTTCCTCTCTCCTCCGCCGT
CGTATTACACCTCTCCTTTCCTCTCCCGCGGGCAGGGCCCCACACTGGAG
CCCTAAACCGAGAAATCTTCACCACGCGCGCGTTATGACCTTTCGCCTCA
GCCCGCGGCCGCCTTCCTTTCCCCCCTTCGCCTCTGTCCGGACCCGATAT
CCGAGTTGAGTTCGCTTCTGTCCTAGTCGCCTTTCCCCGAAACGATGGGG
ACGCGCGTGTGGCGACCGAATCGCTCAGCT
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig74:452687..453366+

>mRNA_P-fluviatile_contig74.13982.1 ID=mRNA_P-fluviatile_contig74.13982.1|Name=mRNA_P-fluviatile_contig74.13982.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1014bp|location=Sequence derived from alignment at P-fluviatile_contig74:452687..453366+ (Porterinema fluviatile SAG_2381)
ATGGTTAACTCAAAACGGATGGAACGTCGTCGGTTCATCGGAGAGATAAG
GGAGAGGGAGGTGACACTTTCTGAAAGCACACGGGCCCGCGAAGGGGCAG
GGGACCTAAAATCTGCCTCTCTTGCTTTTTGTCTGGGAAAACATACCATA
CCCAACGAAGTAGGAGCGGCACAATCCAAATGGGCCCGCGACGCGTTCCG
CCAGGGAGGACCAGCGAGGGTGGTCGAGGGTAGAACCCACGACAAACTCG
AGAATCGCTTCAATACATTCAGTAGATCTCTTGTCCATTTTTCGCTACCC
CTGGTATTTCCTGTCAGCGCTCTTCGAAAAGTCGCGCACTCACTTCTCTC
TCTCCCTGAGCTCAACAAGCACACCTACCTTTTTCTATCTCTCTCCCTCT
TTCCTCTCTCCTCCGCCGTCGTATTACACCTCTCCTTTCCTCTCCCGCGG
GCAGGGCCCCACACTGGAGCCCTAAACCGAGAAATCTTCACCACGCGCGC
GTTATGAATGGTTAACTCAAAACGGATGGAACGTCGTCGGTTCATCGGAG
AGATAAGGGAGAGGGAGGTGACACTTTCTGAAAGCACACGGGCCCGCGAA
GGGGCAGGGGACCTAAAATCTGCCTCTCTTGCTTTTTGTCTGGGAAAACA
TACCATACCCAACGAAGTAGGAGCGGCACAATCCAAATGGGCCCGCGACG
CGTTCCGCCAGGGAGGACCAGCGAGGGTGGTCGAGGGTAGAACCCACGAC
AAACTCGAGAATCGCTTCAATACATTCAGTAGATCTCTTGTCCATTTTTC
GCTACCCCTGGTATTTCCTGTCAGCGCTCTTCGAAAAGTCGCGCACTCAC
TTCTCTCTCTCCCTGAGCTCAACAAGCACACCTACCTTTTTCTATCTCTC
TCCCTCTTTCCTCTCTCCTCCGCCGTCGTATTACACCTCTCCTTTCCTCT
CCCGCGGGCAGGGCCCCACACTGGAGCCCTAAACCGAGAAATCTTCACCA
CGCGCGCGTTATGA
back to top