mRNA_P-fluviatile_contig74.13958.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig74.13958.1
Unique NamemRNA_P-fluviatile_contig74.13958.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig74.13958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig74contigP-fluviatile_contig74:98729..99758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size495
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817177.1058855-CDS-P-fluviatile_contig74:98728..991601622817177.1058855-CDS-P-fluviatile_contig74:98728..99160Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 98729..99160 -
1693571394.401384-CDS-P-fluviatile_contig74:98728..991601693571394.401384-CDS-P-fluviatile_contig74:98728..99160Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 98729..99160 -
1622817177.1163912-CDS-P-fluviatile_contig74:99695..997581622817177.1163912-CDS-P-fluviatile_contig74:99695..99758Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 99696..99758 -
1693571394.4114783-CDS-P-fluviatile_contig74:99695..997581693571394.4114783-CDS-P-fluviatile_contig74:99695..99758Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 99696..99758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig74.13958.1prot_P-fluviatile_contig74.13958.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig74 98729..99758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig74.13958.1

>prot_P-fluviatile_contig74.13958.1 ID=prot_P-fluviatile_contig74.13958.1|Name=mRNA_P-fluviatile_contig74.13958.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=165bp
ETNIEKRGARLDTTSVSRNMEQSMQVRRSREREHGACLCRRKNRRGASLS
MPWSLALALTGLFSTFDFAAAFSATATTTTAGCATSSGSSSGSSSKSARS
SLSMSTGMPRRHSTCSVWSWEFAKGPGQGHQAKTRRGALGRRKGTSNCSF
KFSRSGEVLGRRMMM
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mRNA from alignment at P-fluviatile_contig74:98729..99758-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig74.13958.1 ID=mRNA_P-fluviatile_contig74.13958.1|Name=mRNA_P-fluviatile_contig74.13958.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1030bp|location=Sequence derived from alignment at P-fluviatile_contig74:98729..99758- (Porterinema fluviatile SAG_2381)
GAGACTAATATCGAGAAAAGGGGTGCTAGACTGGACACTACTAGTGTATC
AAGGAACATGGAGGTGAGCAGTCAACAAAGGCTTTTGATGATTACGTTGT
ATCTTGGATGGTGATCAATCAACACAGGCTTTTGATAACTACGTTGTATC
TTCGATGGTGAAACATTACAGGAACATCAAGTTGCCAACGCAGACCACAT
GGTTGGGTGCACACGAGACAATATACTTCGTTCAAAACCTACTCTCTCTC
TCTCTCTCTGGCTGTCCCGATGCTCAAGTCATCATGTGCGCACAGCAGCA
GGGGATGGTGCAAAAAGTTGTGCAGTATAAACGTGGGCTTGCATGAGAGG
GACAAACACGCGTACATCCCGGCCCTTGCCGACGCCGTTTTGAAATGTGA
ACTGCAGGCTGCCACATGAGCGCTGGTTGCAGGTAAGGAGAGAGAGACAA
AGAGAGCTTGAGAGAGAGAGACAATGTTTCAGGCCAAAGTTGGTTGAGAG
AGCAATCGATCGAGCGGGTCGACATATCATGTAAAAGGACTCATTTTTGA
CTCGTTTTTCTCCCTCTCGCTCTTCCTTCCCCGCTCTTCTTTCTCTAGCA
AAGTATGCAGGTGCGGCGATCACGGGAGCGTGAGCATGGCGCCTGCCTCT
GCCGCCGGAAGAACAGAAGAGGGGCTTCACTGTCGATGCCATGGTCGTTA
GCTTTGGCCTTGACCGGCCTATTTTCCACCTTTGACTTCGCGGCAGCCTT
CTCTGCCACCGCCACCACCACCACCGCAGGCTGCGCAACCAGCAGCGGCA
GCAGCAGCGGCAGCAGCAGCAAATCAGCGCGCTCATCGCTATCCATGTCG
ACAGGGATGCCTCGCCGTCATTCTACTTGCAGCGTTTGGTCGTGGGAATT
CGCAAAAGGGCCGGGACAAGGGCACCAGGCGAAGACGCGGCGTGGGGCAT
TGGGTCGCAGGAAGGGTACCTCCAATTGTTCGTTCAAGTTCAGCAGATCG
GGTGAGGTATTGGGAAGAAGGATGATGATG
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Coding sequence (CDS) from alignment at P-fluviatile_contig74:98729..99758-

>mRNA_P-fluviatile_contig74.13958.1 ID=mRNA_P-fluviatile_contig74.13958.1|Name=mRNA_P-fluviatile_contig74.13958.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=990bp|location=Sequence derived from alignment at P-fluviatile_contig74:98729..99758- (Porterinema fluviatile SAG_2381)
GAGACTAATATCGAGAAAAGGGGTGCTAGACTGGACACTACTAGTGTATC
AAGGAACATGGAGGAGACTAATATCGAGAAAAGGGGTGCTAGACTGGACA
CTACTAGTGTATCAAGGAACATGGAGCAAAGTATGCAGGTGCGGCGATCA
CGGGAGCGTGAGCATGGCGCCTGCCTCTGCCGCCGGAAGAACAGAAGAGG
GGCTTCACTGTCGATGCCATGGTCGTTAGCTTTGGCCTTGACCGGCCTAT
TTTCCACCTTTGACTTCGCGGCAGCCTTCTCTGCCACCGCCACCACCACC
ACCGCAGGCTGCGCAACCAGCAGCGGCAGCAGCAGCGGCAGCAGCAGCAA
ATCAGCGCGCTCATCGCTATCCATGTCGACAGGGATGCCTCGCCGTCATT
CTACTTGCAGCGTTTGGTCGTGGGAATTCGCAAAAGGGCCGGGACAAGGG
CACCAGGCGAAGACGCGGCGTGGGGCATTGGGTCGCAGGAAGGGTACCTC
CAATTGTTCGTTCAAGTTCAGCAGATCGGGTGAGGTATTGGGAAGAAGGA
TGATGATGCAAAGTATGCAGGTGCGGCGATCACGGGAGCGTGAGCATGGC
GCCTGCCTCTGCCGCCGGAAGAACAGAAGAGGGGCTTCACTGTCGATGCC
ATGGTCGTTAGCTTTGGCCTTGACCGGCCTATTTTCCACCTTTGACTTCG
CGGCAGCCTTCTCTGCCACCGCCACCACCACCACCGCAGGCTGCGCAACC
AGCAGCGGCAGCAGCAGCGGCAGCAGCAGCAAATCAGCGCGCTCATCGCT
ATCCATGTCGACAGGGATGCCTCGCCGTCATTCTACTTGCAGCGTTTGGT
CGTGGGAATTCGCAAAAGGGCCGGGACAAGGGCACCAGGCGAAGACGCGG
CGTGGGGCATTGGGTCGCAGGAAGGGTACCTCCAATTGTTCGTTCAAGTT
CAGCAGATCGGGTGAGGTATTGGGAAGAAGGATGATGATG
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