mRNA_P-fluviatile_contig73.13937.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig73.13937.1
Unique NamemRNA_P-fluviatile_contig73.13937.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig73.13937.1 vs. uniprot
Match: A0A6H5KZ75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ75_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.170e-20
Identity = 79/132 (59.85%), Postives = 91/132 (68.94%), Query Frame = 1 
Query:  631 RLATKREDFERMREMSAHMDNVVQRLVAFFPPEDKKTENNDANAAQHRRPTVSELRGLSQPPPEQARVRSVSARVMTMDRXXXXXXXXXXXXXSVASGLHFEDEPSASSLSNGEHENQPRNAETRTRSRTGQ 1026
            RLA KREDFE+M+E+SAHMDNVVQRL  +FPP+D + E N         P   EL  L  PPP+ AR R VSARV+TMDR XXXXXXXXXXXXSVASGLHF+DE SAS+ SN  H    + A+ R     GQ
Sbjct:   88 RLARKREDFEKMKELSAHMDNVVQRLATYFPPDDTEGEPNTDVVPPSAAP---ELPPLPLPPPDNARGRYVSARVLTMDRAXXXXXXXXXXXXSVASGLHFDDELSASTASNSRHGEDEQRAKRRGSGGRGQ 216
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BLAST of mRNA_P-fluviatile_contig73.13937.1 vs. uniprot
Match: D8LRH5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH5_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.560e-15
Identity = 75/138 (54.35%), Postives = 90/138 (65.22%), Query Frame = 1 
Query:  625 EKRLATKREDFERMREMSAHMDNVVQRLVAFFPPE----DKKTENNDANAAQHRRPTVSELRGLSQPPPEQARVRSVSARVMTMDRXXXXXXXXXXXXXSVASGLHFEDEPSASSLSNGEHENQPRNAETRTRSRTGQ 1026
            E+RLA KREDFE+M+E+S HMDNVVQRL  +FP +    + KT+    +AA        EL  L  P P+ AR R VSARV+TM  XXXXXXXXXXXX SVASGLHF+DE S S+ S G H    ++AE R     GQ
Sbjct:   86 ERRLARKREDFEKMKELSTHMDNVVQRLATYFPLDGTEGEPKTDVVPPSAA-------PELPPLPLPSPDNARDRYVSARVLTMXXXXXXXXXXXXXXTSVASGLHFDDELSGSTASYGRHGEDEQHAERRGAGGRGQ 216
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig73.13937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZ75_9PHAE1.170e-2059.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRH5_ECTSI2.560e-1554.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig73contigP-fluviatile_contig73:397488..400871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_004540.1
Exons3
Model size1823
Cds size816
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig73.13937.1prot_P-fluviatile_contig73.13937.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig73 398090..400466 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817174.8627193-UTR-P-fluviatile_contig73:397487..3980891622817174.8627193-UTR-P-fluviatile_contig73:397487..398089Porterinema fluviatile SAG_2381UTRP-fluviatile_contig73 397488..398089 -
1693571385.6149569-UTR-P-fluviatile_contig73:397487..3980891693571385.6149569-UTR-P-fluviatile_contig73:397487..398089Porterinema fluviatile SAG_2381UTRP-fluviatile_contig73 397488..398089 -
1622817174.9051821-UTR-P-fluviatile_contig73:400466..4008711622817174.9051821-UTR-P-fluviatile_contig73:400466..400871Porterinema fluviatile SAG_2381UTRP-fluviatile_contig73 400467..400871 -
1693571385.9095633-UTR-P-fluviatile_contig73:400466..4008711693571385.9095633-UTR-P-fluviatile_contig73:400466..400871Porterinema fluviatile SAG_2381UTRP-fluviatile_contig73 400467..400871 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817174.8736286-CDS-P-fluviatile_contig73:398089..3983611622817174.8736286-CDS-P-fluviatile_contig73:398089..398361Porterinema fluviatile SAG_2381CDSP-fluviatile_contig73 398090..398361 -
1693571385.6243637-CDS-P-fluviatile_contig73:398089..3983611693571385.6243637-CDS-P-fluviatile_contig73:398089..398361Porterinema fluviatile SAG_2381CDSP-fluviatile_contig73 398090..398361 -
1622817174.8840163-CDS-P-fluviatile_contig73:399030..3993551622817174.8840163-CDS-P-fluviatile_contig73:399030..399355Porterinema fluviatile SAG_2381CDSP-fluviatile_contig73 399031..399355 -
1693571385.8853285-CDS-P-fluviatile_contig73:399030..3993551693571385.8853285-CDS-P-fluviatile_contig73:399030..399355Porterinema fluviatile SAG_2381CDSP-fluviatile_contig73 399031..399355 -
1622817174.8948596-CDS-P-fluviatile_contig73:400247..4004661622817174.8948596-CDS-P-fluviatile_contig73:400247..400466Porterinema fluviatile SAG_2381CDSP-fluviatile_contig73 400248..400466 -
1693571385.900304-CDS-P-fluviatile_contig73:400247..4004661693571385.900304-CDS-P-fluviatile_contig73:400247..400466Porterinema fluviatile SAG_2381CDSP-fluviatile_contig73 400248..400466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig73.13937.1

>prot_P-fluviatile_contig73.13937.1 ID=prot_P-fluviatile_contig73.13937.1|Name=mRNA_P-fluviatile_contig73.13937.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=272bp
MSESGSGSGSGSGSGDESGSDSDSESDSSSGGSGSSSGEDSDNGSSGSGT
DDSGNSEGRDEEKEVEKIDESVKEKRLATKREDFERMREMSAHMDNVVQR
LVAFFPPEDKKTENNDANAAQHRRPTVSELRGLSQPPPEQARVRSVSARV
MTMDRAVSAGRLTTDRAVSVASGLHFEDEPSASSLSNGEHENQPRNAETR
TRSRTGQGPESSIANNGTDVDWGGGVIGPVPSGARGFEISRRQTARSAPR
RVARRQPTAGRGLTREKQTTS*
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mRNA from alignment at P-fluviatile_contig73:397488..400871-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig73.13937.1 ID=mRNA_P-fluviatile_contig73.13937.1|Name=mRNA_P-fluviatile_contig73.13937.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3384bp|location=Sequence derived from alignment at P-fluviatile_contig73:397488..400871- (Porterinema fluviatile SAG_2381)
AACCTCTGCACCGAGTGGAATTCCTTGCGGCTGAGTTGAGCAGAAGGGGA
ATGATGTCGCGATCACAGAGCTCAAGTGATGAGGTCAGATAAAAGGTGCC
CCTCTCAGGGGAATATCGCACTACTGTGCTAGGAGACTGCATTGACGGAC
AAAGTTGGCGTATGCACAATAGCGTGAACCTAGAGCTACCAAAAATGAGC
CTCATTGTGTCCGTCTCGGGTCTCAATTAGCTAGAACCGCTGCACTTCAA
TTGCGTCCTGTTTTTTTACCTGAGCACGAAGCGAATCAGATGGGTGAACG
CACACTTGGCAGGGACATTTGGCCACACCAAACACCCAACTGCCACACGC
CCAGGATATCAGATTTGCAGACAACAGCAGCGATGAAGGGGGCGAAGACG
AGTCAATGTCTGAGTCCGGGTCTGGGTCTGGGTCTGGGTCTGGATCAGGC
GATGAGAGCGGCTCCGACAGCGACTCCGAAAGCGATTCGTCTAGTGGAGG
TAGCGGGAGCAGTTCCGGGGAGGACAGTGACAACGGCAGCAGTGGAAGTG
GAACTGATGATTCAGGGAACAGCGAGGGCCGAGACGAGGAGAAGGAAGTA
GAGAAAATTGACGAAAGTGTCAAGGTCAGTATTGGATTATTCTCGATATG
CCATTGAAAGAGCTTGGGGATTTTGCGAAGATCGACAGTCTGGCAAAGCT
CCAAAGAGATGGGATTGGGATGAGACACCGAACTACTCTTCCCAACGGGA
GTCGTGCTGCAGACGGCCCCAGCAGTTTTTTTGCTGCTCTAAGGATTTCT
AAATATTATCATACTCCTGGGAATGAGGCATGCGGGTTGTAAACAACAGG
CAATCGCGCCTCACCGGCCAGTTTTGCCATGAGATAAGTGTAGCCTGCCA
CAACTGCATCGCAGGCTGAATCAATCGCTCATCAGGGCGCCGGTCGCGTG
TGCACCGATCTACACTTATGAGCTCGTTTTCTTCGCTCGTGTATGCCCTG
CTGTCGTTGTAGGAAAAAGGGAGGAAATCGGTGGTTTATTATTGCACGAG
AGGTGAATGCTTCAGACGGGAGGTTGCGCAAGCTCGTTCTCTTCCTGCTC
CTCACCCTCATGCCCATTTGCTTGCCACTTACATGTAATTTTGCTGCCAC
ATAGTCGTTGGCTGGTTATCCCCCCTGTGTGTTTTCATCTCCCGTGCTGT
GACGACGTGACACGACGAGAAAAATCCAAAGGATCCCGGATATTTGCAAT
TTTATTCGAGCGCTTCCACCAAGACGTGTCCGTAGCATGTCGATGCCCAT
GAGTTTCCCGCCTCACCCCGAACTCCCTGGCACACACGGCGCATGCAAAC
GATTTTTTAGACGAGAGATTTACGGGGTATGCGCGGCTGCACAGTTTTTG
CCCCTGAGTTGTTCATCAGTAGCACAACGACCTCATTTGGCCTGGATACG
TGCCGTTCGTTGGTCGACTATTCGCCTGCCATCGTGATCCCACGTCCCAC
CGTGTCGATTTTCCAGGAGAAGCGGCTGGCCACCAAGCGAGAAGACTTCG
AGAGGATGAGAGAAATGTCTGCACACATGGACAACGTCGTCCAGCGTCTG
GTCGCGTTCTTCCCCCCGGAAGACAAGAAAACCGAAAACAATGACGCCAA
TGCTGCTCAGCATCGTCGTCCAACCGTATCTGAGCTGCGCGGGCTGTCTC
AGCCACCGCCGGAGCAGGCGAGAGTCAGATCCGTGTCCGCACGGGTGATG
ACAATGGACCGAGCGGTGTCGGCTGGGCGGCTCACGACCGACCGGGCTGT
TTCGGTCGCCAGCGGCCTGCACTTCGAAGATGAGCCTTCAGGTACGGGCG
CCTCTGGAGAGGGGGGATGAGGTTGTGCCGCGTAGGAGGAGCCGTCATCG
ATACCCGCTCGTGCCTCACTCCCCCGTACATTTCAGCGGTTGGCGGGTCG
GATCGCCGTTGTTGAACGTCGAAAAGCAGTCACTCGGTTCCCGTGTTCCG
GTGTGAGACCTGCCATCCCTGCTCCCGCCCCTCCCCACCCCACCTGTTGC
CCTCCCGGGTTCAAATTTTCGAACATGACTTACCTTTCAAAGGTAAGAAA
CGGGTGAGACCGATTGCTTTGCTCGCGTCAAAGAACTGTTGAGAATCAAA
CGGTTGACGGAACCCAGGCGTTACGTAGGTAAGGGTCCCGATCGTGGAAT
GTCTACCCAGGAGGCCTTCCTTATGAAGCATCGCGATCCCCTACCAGAAT
TCCGTTGTCAAAGTCTTGAAGAACGACCGGTGTCTTTTTGGGGCCAGAAG
CTGCTCGACAGCAGCCGCGCCGTTGCACACTCATAGAATTACGCCTTTTT
CTTGTCAGGGGACGACATTGGTGATACCTTCTCCGCCCGCGGTCAGGTAA
CGAGGGCTCTCCCCTGAACAGAAGTGGTCACGAGAGGCGTTGTACACGTT
CTCTTATCGCTTCTCTGCAAGCTTAAACTCCGCCTTTTGTTGTTCGTCTC
GCCGACGCAGCTTCGTCGCTTTCTAACGGCGAGCACGAGAACCAGCCGCG
GAACGCGGAAACTCGGACAAGGAGTAGAACGGGGCAAGGACCGGAGAGTA
GTATAGCAAATAACGGGACGGATGTTGACTGGGGAGGGGGCGTGATAGGT
CCGGTCCCGAGTGGTGCGCGGGGATTCGAAATCAGCAGGAGGCAGACGGC
GAGGTCGGCGCCGAGAAGAGTCGCACGGCGACAACCGACGGCAGGCAGGG
GATTGACGAGAGAAAAGCAAACGACGTCGTGAGAGACCTGGGGTCGCAGA
GACCGCCAGCAAGAGCAGGCACCTATGTCGGCGCGGAAGCTTTCCATGAG
CGACTTTTATGGGATGAGTTCCGCGAATCCTTGGAAGGGTTCGCTGCAAG
CGCGGGGGCGCCGGTTCCCACATCGTGGGCCCGCGGTGTCGCAGCCGCGA
AAGGGAAGGAGGAAAGGGCTCGTGAGGAACAGCGGCGGCGGCTCATCAAC
GAAGCAATTGCTGTTTTACTCGAGGGCAGTAGCAGCAGTGGTAGCGATGA
CGAGAGATCGGACGATGACGCTGTTTAGTGCTGTCATGCTCCTGGTAGTA
GAATCATAGGTAGCGAATGCGAGGGGTTGGTGATGACGCTTTATAGCCCA
GTGTCCTTGCTCGTGAAAGTTTGGTTCAAACCGCAGGCGAAAGCTTGTGG
GATAAGATTGGTTTTGTAGAGAAGGTAGTGTGTGCGTTTGTTAAGGAGAG
GGGCGTATGCATGCTGCGTTTGGTCGACATCGCGCGGAATGCATGAGCGA
TTACTGATGCCACAGGTTTGTTGTCTAACGAAGCTTGTGGCAGCTCAGGA
GGAGGGCGCCATTGTTGCGATGTGCGCGTGGAAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig73:397488..400871-

>mRNA_P-fluviatile_contig73.13937.1 ID=mRNA_P-fluviatile_contig73.13937.1|Name=mRNA_P-fluviatile_contig73.13937.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1632bp|location=Sequence derived from alignment at P-fluviatile_contig73:397488..400871- (Porterinema fluviatile SAG_2381)
ATGTCTGAGTCCGGGTCTGGGTCTGGGTCTGGGTCTGGATCAGGCGATGA
GAGCGGCTCCGACAGCGACTCCGAAAGCGATTCGTCTAGTGGAGGTAGCG
GGAGCAGTTCCGGGGAGGACAGTGACAACGGCAGCAGTGGAAGTGGAACT
GATGATTCAGGGAACAGCGAGGGCCGAGACGAGGAGAAGGAAGTAGAGAA
AATTGACGAAAGTGTCAAGATGTCTGAGTCCGGGTCTGGGTCTGGGTCTG
GGTCTGGATCAGGCGATGAGAGCGGCTCCGACAGCGACTCCGAAAGCGAT
TCGTCTAGTGGAGGTAGCGGGAGCAGTTCCGGGGAGGACAGTGACAACGG
CAGCAGTGGAAGTGGAACTGATGATTCAGGGAACAGCGAGGGCCGAGACG
AGGAGAAGGAAGTAGAGAAAATTGACGAAAGTGTCAAGGAGAAGCGGCTG
GCCACCAAGCGAGAAGACTTCGAGAGGATGAGAGAAATGTCTGCACACAT
GGACAACGTCGTCCAGCGTCTGGTCGCGTTCTTCCCCCCGGAAGACAAGA
AAACCGAAAACAATGACGCCAATGCTGCTCAGCATCGTCGTCCAACCGTA
TCTGAGCTGCGCGGGCTGTCTCAGCCACCGCCGGAGCAGGCGAGAGTCAG
ATCCGTGTCCGCACGGGTGATGACAATGGACCGAGCGGTGTCGGCTGGGC
GGCTCACGACCGACCGGGCTGTTTCGGTCGCCAGCGGCCTGCACTTCGAA
GATGAGCCTTCAGGAGAAGCGGCTGGCCACCAAGCGAGAAGACTTCGAGA
GGATGAGAGAAATGTCTGCACACATGGACAACGTCGTCCAGCGTCTGGTC
GCGTTCTTCCCCCCGGAAGACAAGAAAACCGAAAACAATGACGCCAATGC
TGCTCAGCATCGTCGTCCAACCGTATCTGAGCTGCGCGGGCTGTCTCAGC
CACCGCCGGAGCAGGCGAGAGTCAGATCCGTGTCCGCACGGGTGATGACA
ATGGACCGAGCGGTGTCGGCTGGGCGGCTCACGACCGACCGGGCTGTTTC
GGTCGCCAGCGGCCTGCACTTCGAAGATGAGCCTTCAGCTTCGTCGCTTT
CTAACGGCGAGCACGAGAACCAGCCGCGGAACGCGGAAACTCGGACAAGG
AGTAGAACGGGGCAAGGACCGGAGAGTAGTATAGCAAATAACGGGACGGA
TGTTGACTGGGGAGGGGGCGTGATAGGTCCGGTCCCGAGTGGTGCGCGGG
GATTCGAAATCAGCAGGAGGCAGACGGCGAGGTCGGCGCCGAGAAGAGTC
GCACGGCGACAACCGACGGCAGGCAGGGGATTGACGAGAGAAAAGCAAAC
GACGTCGTGACTTCGTCGCTTTCTAACGGCGAGCACGAGAACCAGCCGCG
GAACGCGGAAACTCGGACAAGGAGTAGAACGGGGCAAGGACCGGAGAGTA
GTATAGCAAATAACGGGACGGATGTTGACTGGGGAGGGGGCGTGATAGGT
CCGGTCCCGAGTGGTGCGCGGGGATTCGAAATCAGCAGGAGGCAGACGGC
GAGGTCGGCGCCGAGAAGAGTCGCACGGCGACAACCGACGGCAGGCAGGG
GATTGACGAGAGAAAAGCAAACGACGTCGTGA
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