mRNA_P-fluviatile_contig73.13919.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig73.13919.1
Unique NamemRNA_P-fluviatile_contig73.13919.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig73.13919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig73contigP-fluviatile_contig73:125258..125704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig73.13919.1prot_P-fluviatile_contig73.13919.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig73 125295..125615 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817169.0396135-UTR-P-fluviatile_contig73:125257..1252941622817169.0396135-UTR-P-fluviatile_contig73:125257..125294Porterinema fluviatile SAG_2381UTRP-fluviatile_contig73 125258..125294 +
1693571353.1021538-UTR-P-fluviatile_contig73:125257..1252941693571353.1021538-UTR-P-fluviatile_contig73:125257..125294Porterinema fluviatile SAG_2381UTRP-fluviatile_contig73 125258..125294 +
1622817169.0656703-UTR-P-fluviatile_contig73:125615..1257041622817169.0656703-UTR-P-fluviatile_contig73:125615..125704Porterinema fluviatile SAG_2381UTRP-fluviatile_contig73 125616..125704 +
1693571353.1263692-UTR-P-fluviatile_contig73:125615..1257041693571353.1263692-UTR-P-fluviatile_contig73:125615..125704Porterinema fluviatile SAG_2381UTRP-fluviatile_contig73 125616..125704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817169.0516717-CDS-P-fluviatile_contig73:125294..1256151622817169.0516717-CDS-P-fluviatile_contig73:125294..125615Porterinema fluviatile SAG_2381CDSP-fluviatile_contig73 125295..125615 +
1693571353.1139467-CDS-P-fluviatile_contig73:125294..1256151693571353.1139467-CDS-P-fluviatile_contig73:125294..125615Porterinema fluviatile SAG_2381CDSP-fluviatile_contig73 125295..125615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig73.13919.1

>prot_P-fluviatile_contig73.13919.1 ID=prot_P-fluviatile_contig73.13919.1|Name=mRNA_P-fluviatile_contig73.13919.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=107bp
MSYSTFGLVCVHNELNMQFSRVGLATTDTCPSVAFRLSVLIVECKKKKKK
IGLSCQHGLSSAKYRALVEFVRTLFSVFSLSPQVFVNTLHTCMNAYAFPV
HFYSLI*
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mRNA from alignment at P-fluviatile_contig73:125258..125704+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig73.13919.1 ID=mRNA_P-fluviatile_contig73.13919.1|Name=mRNA_P-fluviatile_contig73.13919.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=447bp|location=Sequence derived from alignment at P-fluviatile_contig73:125258..125704+ (Porterinema fluviatile SAG_2381)
GATCCCCCTCGCCACAAGCCCCGTCAGGACGTGGCCAATGTCGTATAGCA
CCTTTGGGCTTGTCTGTGTACACAACGAACTCAACATGCAGTTTTCCCGT
GTCGGTTTAGCAACAACCGATACTTGCCCATCGGTCGCGTTTCGTCTGTC
TGTCTTAATTGTTGAATGTAAAAAAAAAAAAAAAAAAATCGGGTTGTCAT
GCCAACATGGCTTGTCAAGTGCGAAGTACCGCGCACTGGTTGAGTTTGTC
CGTACACTTTTCAGTGTATTTTCCTTGTCACCGCAAGTGTTTGTCAACAC
TTTGCATACGTGTATGAATGCCTACGCTTTTCCTGTCCATTTTTATTCGC
TCATATAGACTGTACTGTATATATTTTTTCTTTTCTGAGCTTGGTTGCTT
TGTCTGTCCCATAGGGCACCGATTTGGATTCCTTGGCTTGCCTGTTT
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Coding sequence (CDS) from alignment at P-fluviatile_contig73:125258..125704+

>mRNA_P-fluviatile_contig73.13919.1 ID=mRNA_P-fluviatile_contig73.13919.1|Name=mRNA_P-fluviatile_contig73.13919.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=642bp|location=Sequence derived from alignment at P-fluviatile_contig73:125258..125704+ (Porterinema fluviatile SAG_2381)
ATGTCGTATAGCACCTTTGGGCTTGTCTGTGTACACAACGAACTCAACAT
GCAGTTTTCCCGTGTCGGTTTAGCAACAACCGATACTTGCCCATCGGTCG
CGTTTCGTCTGTCTGTCTTAATTGTTGAATGTAAAAAAAAAAAAAAAAAA
ATCGGGTTGTCATGCCAACATGGCTTGTCAAGTGCGAAGTACCGCGCACT
GGTTGAGTTTGTCCGTACACTTTTCAGTGTATTTTCCTTGTCACCGCAAG
TGTTTGTCAACACTTTGCATACGTGTATGAATGCCTACGCTTTTCCTGTC
CATTTTTATTCGCTCATATAGATGTCGTATAGCACCTTTGGGCTTGTCTG
TGTACACAACGAACTCAACATGCAGTTTTCCCGTGTCGGTTTAGCAACAA
CCGATACTTGCCCATCGGTCGCGTTTCGTCTGTCTGTCTTAATTGTTGAA
TGTAAAAAAAAAAAAAAAAAAATCGGGTTGTCATGCCAACATGGCTTGTC
AAGTGCGAAGTACCGCGCACTGGTTGAGTTTGTCCGTACACTTTTCAGTG
TATTTTCCTTGTCACCGCAAGTGTTTGTCAACACTTTGCATACGTGTATG
AATGCCTACGCTTTTCCTGTCCATTTTTATTCGCTCATATAG
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