mRNA_P-fluviatile_contig73.13916.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig73.13916.1
Unique NamemRNA_P-fluviatile_contig73.13916.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig73.13916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig73contigP-fluviatile_contig73:113449..114464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size1016
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig73.13916.1prot_P-fluviatile_contig73.13916.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig73 113581..114129 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817168.9278162-UTR-P-fluviatile_contig73:113448..1135801622817168.9278162-UTR-P-fluviatile_contig73:113448..113580Porterinema fluviatile SAG_2381UTRP-fluviatile_contig73 113449..113580 +
1693571353.036066-UTR-P-fluviatile_contig73:113448..1135801693571353.036066-UTR-P-fluviatile_contig73:113448..113580Porterinema fluviatile SAG_2381UTRP-fluviatile_contig73 113449..113580 +
1622817168.952124-UTR-P-fluviatile_contig73:114129..1144641622817168.952124-UTR-P-fluviatile_contig73:114129..114464Porterinema fluviatile SAG_2381UTRP-fluviatile_contig73 114130..114464 +
1693571353.0645683-UTR-P-fluviatile_contig73:114129..1144641693571353.0645683-UTR-P-fluviatile_contig73:114129..114464Porterinema fluviatile SAG_2381UTRP-fluviatile_contig73 114130..114464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817168.941071-CDS-P-fluviatile_contig73:113580..1141291622817168.941071-CDS-P-fluviatile_contig73:113580..114129Porterinema fluviatile SAG_2381CDSP-fluviatile_contig73 113581..114129 +
1693571353.0465598-CDS-P-fluviatile_contig73:113580..1141291693571353.0465598-CDS-P-fluviatile_contig73:113580..114129Porterinema fluviatile SAG_2381CDSP-fluviatile_contig73 113581..114129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig73.13916.1

>prot_P-fluviatile_contig73.13916.1 ID=prot_P-fluviatile_contig73.13916.1|Name=mRNA_P-fluviatile_contig73.13916.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=183bp
MLSLPHHSTHISRNQRQECFSYSLTLRAPLTMTQVRIASKTTWFPLAADL
IKSLQTTCSHSTPIMHGTLLRCAKYTCRLRVVARLWWCSACFGLWLLVFT
HNFVPFVRPRYLAIARKSLVLSLDRHRQHLVQQSRITKQRCCRIQMAHSK
QALPYGLLRGSNPGCNRWNCETYVSVWHTKWG*
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mRNA from alignment at P-fluviatile_contig73:113449..114464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig73.13916.1 ID=mRNA_P-fluviatile_contig73.13916.1|Name=mRNA_P-fluviatile_contig73.13916.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1016bp|location=Sequence derived from alignment at P-fluviatile_contig73:113449..114464+ (Porterinema fluviatile SAG_2381)
GAGCGACTTTAATAGGGTCGTCATCAGAGGTAAGATTGCGGATGAGAGTG
GAGACTGGCGGTGATCCGAAGTccCCCCCCTTTGGTTTGCCGGGGTGTCG
AAATCGAGAGACCCTTTTAAGGAACATGGGAGATGCTCTCGCTCCCGCAT
CACAGCACACACATAAGTAGAAATCAACGACAAGAGTGCTTCAGCTATTC
GCTTACCTTGCGAGCACCGTTGACGATGACACAAGTTCGCATAGCATCTA
AAACGACTTGGTTCCCGTTAGCAGCAGATCTCATCAAGAGCTTGCAGACA
ACCTGCTCTCATTCGACACCCATAATGCATGGTACCCTGCTGCGCTGTGC
CAAGTATACTTGCCGTTTACGCGTCGTTGCGCGTCTTTGGTGGTGTAGTG
CCTGCTTTGGCTTGTGGCTACTTGTTTTCACGCATAACTTCGTACCATTT
GTAAGGCCTCGTTATCTCGCGATTGCCCGGAAGTCACTCGTCCTTTCTCT
AGACCGACACAGGCAGCACCTCGTTCAGCAGTCGCGTATAACTAAGCAAA
GGTGTTGCCGCATCCAGATGGCGCACAGCAAACAGGCTTTGCCGTACGGC
TTACTCCGTGGATCGAACCCGGGATGCAATCGTTGGAATTGCGAAACATA
CGTTTCCGTATGGCACACCAAATGGGGGTAAAAACCGTAGGTCGCATAAG
ATTTCGCATACCCCGGGTCGATTTTCAACGCTTATTTCTTCTGCGCGGAT
GAAGAGTTGGTTTCGCCAGACGTATCGGCTTTCGAGCGAAGCTGTCGAGA
GCTGTGTAGTGACGTATCGTTGATGGTAGGCAACCCCTCGCTGTCGAGAT
ATCGAGCTCCGAAAATCGATCGAGGGAGTGTGATATCTTAGGCGACCTAC
GGTACAACGGTTGCCAAGCCAAATAGCTATCTACTGCTGCACACGGTCGC
CAAACAGCGATGGCACTGCTCTGTGATGCCTTGTTGCCGTGGGCCAGGCG
AGGCGTGGTTTACCGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig73:113449..114464+

>mRNA_P-fluviatile_contig73.13916.1 ID=mRNA_P-fluviatile_contig73.13916.1|Name=mRNA_P-fluviatile_contig73.13916.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1098bp|location=Sequence derived from alignment at P-fluviatile_contig73:113449..114464+ (Porterinema fluviatile SAG_2381)
ATGCTCTCGCTCCCGCATCACAGCACACACATAAGTAGAAATCAACGACA
AGAGTGCTTCAGCTATTCGCTTACCTTGCGAGCACCGTTGACGATGACAC
AAGTTCGCATAGCATCTAAAACGACTTGGTTCCCGTTAGCAGCAGATCTC
ATCAAGAGCTTGCAGACAACCTGCTCTCATTCGACACCCATAATGCATGG
TACCCTGCTGCGCTGTGCCAAGTATACTTGCCGTTTACGCGTCGTTGCGC
GTCTTTGGTGGTGTAGTGCCTGCTTTGGCTTGTGGCTACTTGTTTTCACG
CATAACTTCGTACCATTTGTAAGGCCTCGTTATCTCGCGATTGCCCGGAA
GTCACTCGTCCTTTCTCTAGACCGACACAGGCAGCACCTCGTTCAGCAGT
CGCGTATAACTAAGCAAAGGTGTTGCCGCATCCAGATGGCGCACAGCAAA
CAGGCTTTGCCGTACGGCTTACTCCGTGGATCGAACCCGGGATGCAATCG
TTGGAATTGCGAAACATACGTTTCCGTATGGCACACCAAATGGGGGTAAA
TGCTCTCGCTCCCGCATCACAGCACACACATAAGTAGAAATCAACGACAA
GAGTGCTTCAGCTATTCGCTTACCTTGCGAGCACCGTTGACGATGACACA
AGTTCGCATAGCATCTAAAACGACTTGGTTCCCGTTAGCAGCAGATCTCA
TCAAGAGCTTGCAGACAACCTGCTCTCATTCGACACCCATAATGCATGGT
ACCCTGCTGCGCTGTGCCAAGTATACTTGCCGTTTACGCGTCGTTGCGCG
TCTTTGGTGGTGTAGTGCCTGCTTTGGCTTGTGGCTACTTGTTTTCACGC
ATAACTTCGTACCATTTGTAAGGCCTCGTTATCTCGCGATTGCCCGGAAG
TCACTCGTCCTTTCTCTAGACCGACACAGGCAGCACCTCGTTCAGCAGTC
GCGTATAACTAAGCAAAGGTGTTGCCGCATCCAGATGGCGCACAGCAAAC
AGGCTTTGCCGTACGGCTTACTCCGTGGATCGAACCCGGGATGCAATCGT
TGGAATTGCGAAACATACGTTTCCGTATGGCACACCAAATGGGGGTAA
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