mRNA_P-fluviatile_contig73.13904.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig73.13904.1
Unique NamemRNA_P-fluviatile_contig73.13904.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig73.13904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig73contigP-fluviatile_contig73:3393..3863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size471
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig73.13904.1prot_P-fluviatile_contig73.13904.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig73 3505..3837 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817168.874072-UTR-P-fluviatile_contig73:3392..35041622817168.874072-UTR-P-fluviatile_contig73:3392..3504Porterinema fluviatile SAG_2381UTRP-fluviatile_contig73 3393..3504 +
1693571352.994287-UTR-P-fluviatile_contig73:3392..35041693571352.994287-UTR-P-fluviatile_contig73:3392..3504Porterinema fluviatile SAG_2381UTRP-fluviatile_contig73 3393..3504 +
1622817168.8994088-UTR-P-fluviatile_contig73:3837..38631622817168.8994088-UTR-P-fluviatile_contig73:3837..3863Porterinema fluviatile SAG_2381UTRP-fluviatile_contig73 3838..3863 +
1693571353.0182908-UTR-P-fluviatile_contig73:3837..38631693571353.0182908-UTR-P-fluviatile_contig73:3837..3863Porterinema fluviatile SAG_2381UTRP-fluviatile_contig73 3838..3863 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817168.8877058-CDS-P-fluviatile_contig73:3504..38371622817168.8877058-CDS-P-fluviatile_contig73:3504..3837Porterinema fluviatile SAG_2381CDSP-fluviatile_contig73 3505..3837 +
1693571353.0049434-CDS-P-fluviatile_contig73:3504..38371693571353.0049434-CDS-P-fluviatile_contig73:3504..3837Porterinema fluviatile SAG_2381CDSP-fluviatile_contig73 3505..3837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig73.13904.1

>prot_P-fluviatile_contig73.13904.1 ID=prot_P-fluviatile_contig73.13904.1|Name=mRNA_P-fluviatile_contig73.13904.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=111bp
MQFCLRLIFPTFSLLPHNTTRRAARMPPRHSSTRHARQAKRLQFFADSVI
ALCCSALKQSRTVPLAEPCAKSLEKAPLPIAMLPIFRKELEVSPSDHKGS
VPSTGTARPP*
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mRNA from alignment at P-fluviatile_contig73:3393..3863+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig73.13904.1 ID=mRNA_P-fluviatile_contig73.13904.1|Name=mRNA_P-fluviatile_contig73.13904.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=471bp|location=Sequence derived from alignment at P-fluviatile_contig73:3393..3863+ (Porterinema fluviatile SAG_2381)
GAATCGCGGCAAAAGAGGGTGCTGGTCATTCGAAACCAGCGCAGCAGGGT
CGGGCGGTGGGAGGATGAACAACCATGGTTCATTTCGGTGCACTACGGGC
CACAACCTTTGAATGCAATTCTGCTTGAGACTTATCTTCCCTACTTTCTC
CCTCCTTCCTCATAATACAACAAGGCGCGCCGCCCGAATGCCACCGCGCC
ACTCAAGCACACGTCATGCCCGACAAGCGAAAAGATTGCAATTTTTCGCG
GATTCGGTCATCGCGTTGTGTTGCTCAGCCTTAAAGCAAAGCAGAACGGT
GCCGTTGGCTGAACCATGTGCCAAGAGCCTTGAAAAAGCGCCGCTTCCGA
TCGCGATGTTGCCAATCTTTCGAAAGGAGCTGGAAGTCTCACCTTCCGAT
CATAAAGGGTCAGTCCCGTCAACAGGCACAGCCCGCCCCCCATAGACTCG
CCGGACAAGAAGATGGGCACC
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Coding sequence (CDS) from alignment at P-fluviatile_contig73:3393..3863+

>mRNA_P-fluviatile_contig73.13904.1 ID=mRNA_P-fluviatile_contig73.13904.1|Name=mRNA_P-fluviatile_contig73.13904.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=666bp|location=Sequence derived from alignment at P-fluviatile_contig73:3393..3863+ (Porterinema fluviatile SAG_2381)
ATGCAATTCTGCTTGAGACTTATCTTCCCTACTTTCTCCCTCCTTCCTCA
TAATACAACAAGGCGCGCCGCCCGAATGCCACCGCGCCACTCAAGCACAC
GTCATGCCCGACAAGCGAAAAGATTGCAATTTTTCGCGGATTCGGTCATC
GCGTTGTGTTGCTCAGCCTTAAAGCAAAGCAGAACGGTGCCGTTGGCTGA
ACCATGTGCCAAGAGCCTTGAAAAAGCGCCGCTTCCGATCGCGATGTTGC
CAATCTTTCGAAAGGAGCTGGAAGTCTCACCTTCCGATCATAAAGGGTCA
GTCCCGTCAACAGGCACAGCCCGCCCCCCATAGATGCAATTCTGCTTGAG
ACTTATCTTCCCTACTTTCTCCCTCCTTCCTCATAATACAACAAGGCGCG
CCGCCCGAATGCCACCGCGCCACTCAAGCACACGTCATGCCCGACAAGCG
AAAAGATTGCAATTTTTCGCGGATTCGGTCATCGCGTTGTGTTGCTCAGC
CTTAAAGCAAAGCAGAACGGTGCCGTTGGCTGAACCATGTGCCAAGAGCC
TTGAAAAAGCGCCGCTTCCGATCGCGATGTTGCCAATCTTTCGAAAGGAG
CTGGAAGTCTCACCTTCCGATCATAAAGGGTCAGTCCCGTCAACAGGCAC
AGCCCGCCCCCCATAG
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