mRNA_P-fluviatile_contig72.13881.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig72.13881.1
Unique NamemRNA_P-fluviatile_contig72.13881.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig72.13881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig72contigP-fluviatile_contig72:474839..475391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size553
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817162.2076142-CDS-P-fluviatile_contig72:474838..4751411622817162.2076142-CDS-P-fluviatile_contig72:474838..475141Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 474839..475141 +
1693571327.7277737-CDS-P-fluviatile_contig72:474838..4751411693571327.7277737-CDS-P-fluviatile_contig72:474838..475141Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 474839..475141 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817162.2193105-UTR-P-fluviatile_contig72:475141..4753911622817162.2193105-UTR-P-fluviatile_contig72:475141..475391Porterinema fluviatile SAG_2381UTRP-fluviatile_contig72 475142..475391 +
1693571327.7470148-UTR-P-fluviatile_contig72:475141..4753911693571327.7470148-UTR-P-fluviatile_contig72:475141..475391Porterinema fluviatile SAG_2381UTRP-fluviatile_contig72 475142..475391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig72.13881.1prot_P-fluviatile_contig72.13881.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig72 474839..475141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig72.13881.1

>prot_P-fluviatile_contig72.13881.1 ID=prot_P-fluviatile_contig72.13881.1|Name=mRNA_P-fluviatile_contig72.13881.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=101bp
AHRQVNTIRTPIHNTWDGWPTSVDLIIRPNFRRWSAALKPSSVTLSILLL
QHHVSKRRHARTRPGKIGSPSYTGRSRVTHIVRRQASSPSSPRPLPPCAR
*
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mRNA from alignment at P-fluviatile_contig72:474839..475391+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig72.13881.1 ID=mRNA_P-fluviatile_contig72.13881.1|Name=mRNA_P-fluviatile_contig72.13881.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=553bp|location=Sequence derived from alignment at P-fluviatile_contig72:474839..475391+ (Porterinema fluviatile SAG_2381)
GCACATCGACAGGTGAACACCATTCGCACACCAATCCATAATACATGGGA
CGGGTGGCCCACGAGCGTGGATTTAATAATTCGGCCTAATTTCCGTCGCT
GGTCCGCCGCATTGAAGCCTTCCTCTGTCACCCTGTCGATATTGCTCTTG
CAACATCATGTCAGCAAGCGTCGGCATGCGAGAACTCGGCCGGGCAAAAT
CGGTAGTCCTTCCTATACAGGACGCAGCCGCGTTACACACATAGTACGGC
GTCAAGCCTCGTCGCCTTCCTCCCCAAGACCTCTCCCTCCCTGCGCCCGA
TGACTCATTAAGAACATCACAAATACTAGGCGTTTGTCATGATTCATCAC
GCCAGGGCAAAAATTATAGATTGTGCCTGAATTTGCCACTCCCCGTCGGA
TATTTTTTTCTGTGACCTTGTTCTTGATGACTTGTTGTTGACTTGCTTTT
TGGGGGCCCTCATTCTGGTTGTCGCCGTTGTCTTCCCCCCACCTTTGCTT
GTCCAAAACCTACTGCATGCCCCGTGTCTCGTTTCTCCCTTGTGCTTCGT
GCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig72:474839..475391+

>mRNA_P-fluviatile_contig72.13881.1 ID=mRNA_P-fluviatile_contig72.13881.1|Name=mRNA_P-fluviatile_contig72.13881.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=606bp|location=Sequence derived from alignment at P-fluviatile_contig72:474839..475391+ (Porterinema fluviatile SAG_2381)
GCACATCGACAGGTGAACACCATTCGCACACCAATCCATAATACATGGGA
CGGGTGGCCCACGAGCGTGGATTTAATAATTCGGCCTAATTTCCGTCGCT
GGTCCGCCGCATTGAAGCCTTCCTCTGTCACCCTGTCGATATTGCTCTTG
CAACATCATGTCAGCAAGCGTCGGCATGCGAGAACTCGGCCGGGCAAAAT
CGGTAGTCCTTCCTATACAGGACGCAGCCGCGTTACACACATAGTACGGC
GTCAAGCCTCGTCGCCTTCCTCCCCAAGACCTCTCCCTCCCTGCGCCCGA
TGAGCACATCGACAGGTGAACACCATTCGCACACCAATCCATAATACATG
GGACGGGTGGCCCACGAGCGTGGATTTAATAATTCGGCCTAATTTCCGTC
GCTGGTCCGCCGCATTGAAGCCTTCCTCTGTCACCCTGTCGATATTGCTC
TTGCAACATCATGTCAGCAAGCGTCGGCATGCGAGAACTCGGCCGGGCAA
AATCGGTAGTCCTTCCTATACAGGACGCAGCCGCGTTACACACATAGTAC
GGCGTCAAGCCTCGTCGCCTTCCTCCCCAAGACCTCTCCCTCCCTGCGCC
CGATGA
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