mRNA_P-fluviatile_contig72.13880.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig72.13880.1
Unique NamemRNA_P-fluviatile_contig72.13880.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig72.13880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig72contigP-fluviatile_contig72:474147..474717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size571
Cds size378
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817162.169034-CDS-P-fluviatile_contig72:474146..4745241622817162.169034-CDS-P-fluviatile_contig72:474146..474524Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 474147..474524 +
1693571327.704673-CDS-P-fluviatile_contig72:474146..4745241693571327.704673-CDS-P-fluviatile_contig72:474146..474524Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 474147..474524 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817162.1802938-UTR-P-fluviatile_contig72:474524..4747171622817162.1802938-UTR-P-fluviatile_contig72:474524..474717Porterinema fluviatile SAG_2381UTRP-fluviatile_contig72 474525..474717 +
1693571327.717122-UTR-P-fluviatile_contig72:474524..4747171693571327.717122-UTR-P-fluviatile_contig72:474524..474717Porterinema fluviatile SAG_2381UTRP-fluviatile_contig72 474525..474717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig72.13880.1prot_P-fluviatile_contig72.13880.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig72 474147..474524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig72.13880.1

>prot_P-fluviatile_contig72.13880.1 ID=prot_P-fluviatile_contig72.13880.1|Name=mRNA_P-fluviatile_contig72.13880.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=126bp
MGKPTCGCRQNVVQLYRIWPSECGGAFWWVWPEVRLPRSARFSTNDTVSD
LPGNHSQWLRSNYIDSRERPSTPTLREETIYPKNEPSSVDKEYSSIFSRE
KQQIVTEGDAMRSLTASSLIVKDVR*
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mRNA from alignment at P-fluviatile_contig72:474147..474717+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig72.13880.1 ID=mRNA_P-fluviatile_contig72.13880.1|Name=mRNA_P-fluviatile_contig72.13880.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=571bp|location=Sequence derived from alignment at P-fluviatile_contig72:474147..474717+ (Porterinema fluviatile SAG_2381)
ATGGGTAAGCCAACATGCGGTTGCAGGCAAAATGTCGTGCAGTTGTATCG
AATATGGCCGTCAGAATGTGGTGGGGCGTTTTGGTGGGTTTGGCCGGAGG
TGAGGCTCCCGAGATCCGCTCGCTTCTCTACCAACGATACAGTTTCCGAC
CTTCCGGGGAATCATAGCCAGTGGCTACGAAGTAATTATATCGATAGTAG
AGAGAGACCTTCAACACCGACTCTTCGAGAAGAAACAATTTACCCCAAAA
ACGAACCAAGCAGTGTCGACAAGGAATACTCCTCAATTTTTTCGAGGGAA
AAGCAACAAATTGTTACAGAAGGAGATGCAATGCGGAGCTTGACTGCATC
GTCGCTGATTGTTAAGGACGTGAGATAGAAGGTCGAAGACGACTGCTGGA
ATAAGGTGATAAATTGCGGCCATCGGAGGTCTGAACAGGCAGGGAGGCAT
GCCTCCTCTCATTTTTGTGAAATGCACGTATTATTGCAATGTGTGGAAAC
GAATGTAAAACGGCATGTCAAACGGCATGAATGTCGAGTCGAGCAGCATG
AGCGGAATTTGTGGCCATCAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig72:474147..474717+

>mRNA_P-fluviatile_contig72.13880.1 ID=mRNA_P-fluviatile_contig72.13880.1|Name=mRNA_P-fluviatile_contig72.13880.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=756bp|location=Sequence derived from alignment at P-fluviatile_contig72:474147..474717+ (Porterinema fluviatile SAG_2381)
ATGGGTAAGCCAACATGCGGTTGCAGGCAAAATGTCGTGCAGTTGTATCG
AATATGGCCGTCAGAATGTGGTGGGGCGTTTTGGTGGGTTTGGCCGGAGG
TGAGGCTCCCGAGATCCGCTCGCTTCTCTACCAACGATACAGTTTCCGAC
CTTCCGGGGAATCATAGCCAGTGGCTACGAAGTAATTATATCGATAGTAG
AGAGAGACCTTCAACACCGACTCTTCGAGAAGAAACAATTTACCCCAAAA
ACGAACCAAGCAGTGTCGACAAGGAATACTCCTCAATTTTTTCGAGGGAA
AAGCAACAAATTGTTACAGAAGGAGATGCAATGCGGAGCTTGACTGCATC
GTCGCTGATTGTTAAGGACGTGAGATAGATGGGTAAGCCAACATGCGGTT
GCAGGCAAAATGTCGTGCAGTTGTATCGAATATGGCCGTCAGAATGTGGT
GGGGCGTTTTGGTGGGTTTGGCCGGAGGTGAGGCTCCCGAGATCCGCTCG
CTTCTCTACCAACGATACAGTTTCCGACCTTCCGGGGAATCATAGCCAGT
GGCTACGAAGTAATTATATCGATAGTAGAGAGAGACCTTCAACACCGACT
CTTCGAGAAGAAACAATTTACCCCAAAAACGAACCAAGCAGTGTCGACAA
GGAATACTCCTCAATTTTTTCGAGGGAAAAGCAACAAATTGTTACAGAAG
GAGATGCAATGCGGAGCTTGACTGCATCGTCGCTGATTGTTAAGGACGTG
AGATAG
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