mRNA_P-fluviatile_contig72.13867.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig72.13867.1
Unique NamemRNA_P-fluviatile_contig72.13867.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig72.13867.1 vs. uniprot
Match: A0A6H5L5T4_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T4_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 2.270e-51
Identity = 79/92 (85.87%), Postives = 81/92 (88.04%), Query Frame = 1 
Query:   34 MHGNIVNCWAAATNKP--STRKGIVEEVTRVHCPIALPPPKLNCLYCPETFASEQGRSLHCSVVHPAPLRHLGRGLRRALATGGTMTTPPWH 303
            MHGNIVN WAA TNKP   TR GIVEEVT VH PIA PPPKL CLYCP+TFASE+GRSLHCS VHPAPLRHLGRGLRRALATGGTMTTPPWH
Sbjct:    1 MHGNIVNSWAAPTNKPIKRTRNGIVEEVTGVHYPIAPPPPKLKCLYCPKTFASERGRSLHCSAVHPAPLRHLGRGLRRALATGGTMTTPPWH 92
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BLAST of mRNA_P-fluviatile_contig72.13867.1 vs. uniprot
Match: A0A6H5JW43_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW43_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.700e-50
Identity = 88/102 (86.27%), Postives = 90/102 (88.24%), Query Frame = 1 
Query:    4 AKEAKAAANTMHGNIVNCWAAATNKP--STRKGIVEEVTRVHCPIALPPPKLNCLYCPETFASEQGRSLHCSVVHPAPLRHLGRGLRRALATGGTMTTPPWH 303
            AKEA AAANTMH NIVNCWAAATNKP   TR GIVEEVTRVH PIA PPPKL CLYCP+TFASEQGRS+HCS VHPAPLRHLGRGLR ALATGGTMTTPP H
Sbjct:  159 AKEAGAAANTMHENIVNCWAAATNKPIKRTRNGIVEEVTRVHYPIAPPPPKLKCLYCPKTFASEQGRSVHCSAVHPAPLRHLGRGLRHALATGGTMTTPPRH 260
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BLAST of mRNA_P-fluviatile_contig72.13867.1 vs. uniprot
Match: A0A6H5KB06_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB06_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 5.180e-50
Identity = 85/115 (73.91%), Postives = 88/115 (76.52%), Query Frame = 1 
Query:    4 AKEAKAAANTMHGNIVNCWAAATNKP---------------STRKGIVEEVTRVHCPIALPPPKLNCLYCPETFASEQGRSLHCSVVHPAPLRHLGRGLRRALATGGTMTTPPWH 303
            AKEA+AAAN MH NIVN WAAAT+KP                TR GIVEEVTRVH PIA PPPKL CLYCP+TFA EQ RSLHCS VHPAPLRHLGRGLRRALATGGTM TPPWH
Sbjct:  101 AKEARAAANRMHANIVNSWAAATSKPVGWMEIPFASFGHIKRTRNGIVEEVTRVHYPIAPPPPKLKCLYCPKTFAFEQSRSLHCSAVHPAPLRHLGRGLRRALATGGTMKTPPWH 215
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BLAST of mRNA_P-fluviatile_contig72.13867.1 vs. uniprot
Match: A0A6H5JZQ9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ9_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 2.060e-48
Identity = 85/102 (83.33%), Postives = 88/102 (86.27%), Query Frame = 1 
Query:    4 AKEAKAAANTMHGNIVNCWAAATNKP--STRKGIVEEVTRVHCPIALPPPKLNCLYCPETFASEQGRSLHCSVVHPAPLRHLGRGLRRALATGGTMTTPPWH 303
            AKEA AAANTMHGNIVNCWAA+TN+P   TR GIVEEVTRVH PIA PPPKL  LYCP+T ASEQ RSLHCS VHPAPLRHLGRGLRRAL TGGTMTT PWH
Sbjct:   55 AKEASAAANTMHGNIVNCWAASTNEPIKRTRNGIVEEVTRVHYPIAPPPPKLKWLYCPKTVASEQCRSLHCSAVHPAPLRHLGRGLRRALTTGGTMTTLPWH 156
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BLAST of mRNA_P-fluviatile_contig72.13867.1 vs. uniprot
Match: A0A6H5LMB4_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMB4_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.980e-38
Identity = 66/73 (90.41%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:   85 TRKGIVEEVTRVHCPIALPPPKLNCLYCPETFASEQGRSLHCSVVHPAPLRHLGRGLRRALATGGTMTTPPWH 303
            TR GIVEEVT VH PIA PPPKL CLYCP+TFASEQGRSLHCS VHPAPLRHLGRGLRRALATGGTMTTPPWH
Sbjct:   10 TRNGIVEEVTHVHYPIAPPPPKLKCLYCPKTFASEQGRSLHCSAVHPAPLRHLGRGLRRALATGGTMTTPPWH 82
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BLAST of mRNA_P-fluviatile_contig72.13867.1 vs. uniprot
Match: A0A6H5JW86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW86_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 4.570e-7
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:    4 AKEAKAAANTMHGNIVNCWAAATNKP 81
            AKEA+AAANTMHGNIVNCWAAATNKP
Sbjct:  205 AKEARAAANTMHGNIVNCWAAATNKP 230
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BLAST of mRNA_P-fluviatile_contig72.13867.1 vs. uniprot
Match: A0A6H5KCL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCL0_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 5.840e-7
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:    4 AKEAKAAANTMHGNIVNCWAAATNKP 81
            AKEA+AAANTMHGNIVNCWAAATNKP
Sbjct:  257 AKEARAAANTMHGNIVNCWAAATNKP 282
[Close]
BLAST of mRNA_P-fluviatile_contig72.13867.1 vs. uniprot
Match: A0A6H5KMG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG4_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 6.470e-7
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:    4 AKEAKAAANTMHGNIVNCWAAATNKP 81
            AKEA+AA NTMHGNIVNCWAAATNKP
Sbjct:  133 AKEARAATNTMHGNIVNCWAAATNKP 158
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig72.13867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5L5T4_9PHAE2.270e-5185.87C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JW43_9PHAE1.700e-5086.27C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KB06_9PHAE5.180e-5073.91C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JZQ9_9PHAE2.060e-4883.33DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5LMB4_9PHAE1.980e-3890.41HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JW86_9PHAE4.570e-796.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCL0_9PHAE5.840e-796.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMG4_9PHAE6.470e-792.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig72contigP-fluviatile_contig72:341849..342681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue1.8e-07
Seed eggNOG ortholog2880.D7FI08
EggNOG OGs2DCSR@1,2S5KN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size305
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817161.7188668-CDS-P-fluviatile_contig72:341848..3420701622817161.7188668-CDS-P-fluviatile_contig72:341848..342070Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 341849..342070 -
1693571327.4276226-CDS-P-fluviatile_contig72:341848..3420701693571327.4276226-CDS-P-fluviatile_contig72:341848..342070Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 341849..342070 -
1622817161.7330356-CDS-P-fluviatile_contig72:342600..3426811622817161.7330356-CDS-P-fluviatile_contig72:342600..342681Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 342601..342681 -
1693571327.4440534-CDS-P-fluviatile_contig72:342600..3426811693571327.4440534-CDS-P-fluviatile_contig72:342600..342681Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 342601..342681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig72.13867.1prot_P-fluviatile_contig72.13867.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig72 341849..342681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig72.13867.1

>prot_P-fluviatile_contig72.13867.1 ID=prot_P-fluviatile_contig72.13867.1|Name=mRNA_P-fluviatile_contig72.13867.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=101bp
PAKEAKAAANTMHGNIVNCWAAATNKPSTRKGIVEEVTRVHCPIALPPPK
LNCLYCPETFASEQGRSLHCSVVHPAPLRHLGRGLRRALATGGTMTTPPW
H
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mRNA from alignment at P-fluviatile_contig72:341849..342681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig72.13867.1 ID=mRNA_P-fluviatile_contig72.13867.1|Name=mRNA_P-fluviatile_contig72.13867.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=833bp|location=Sequence derived from alignment at P-fluviatile_contig72:341849..342681- (Porterinema fluviatile SAG_2381)
CCGGCCAAGGAGGCGAAGGCGGCGGCGAACACGATGCACGGGAACATCGT
CAACTGCTGGGCCGCAGCAACAAACAAGCCGGTGAGTTGGTCGGAGATTC
CGTTTGCATCCTTTGGCATGTTCGTGAATGACAAGTGTTTGTCCGGTGTT
ACCTGTTTCGTCTCCCTTGCCCGCCCTGTTGTCCGGCAGAGAAAATACAG
CACGAAAATATTCTGCGGACGATTCTTTTGGTTCACCATTTTCGAATCCT
GGCAGTGCCCTTTTTTTTTTTTTCTTGTTTTTTGTCAACTTTTTCTATTC
ACACTTGCTTGCAGCTGGTGTCGAAGTGTGCCAATCTGGCCGGCAGAGAA
ACTAAAATACGAATTTTTATGGGGGATTATTTTCGTTCACCATCGAGTTC
GAGGACGCCGTTTGAATCCTGGCACTGCCCGTTGTTTTGCTTTCGTTTTT
TTTTTAACTCTTTTTCTGTGCAACATTACTTGCTGCTGTTGTCAAAGTGT
GTCAATCACGTGCCGCTGCCGTTGAAAGTGGAGGGACAGTTGACAAACAT
TTTTTGCTGCACTTTTAGATCCCCGTACCCCGGGCCTCGCTTTGCTGCTA
TTTTTGCGCAGAGTACCCGCAAAGGCATCGTGGAGGAAGTTACCCGCGTC
CACTGTCCCATCGCACTACCTCCTCCCAAGTTGAATTGCCTGTACTGCCC
GGAGACCTTCGCCTCCGAACAAGGTCGATCGCTACACTGTAGTGTCGTTC
ACCCAGCTCCTCTTCGGCATCTTGGACGAGGGCTCAGGCGCGCCCTCGCG
ACGGGTGGGACCATGACGACTCCACCTTGGCAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig72:341849..342681-

>mRNA_P-fluviatile_contig72.13867.1 ID=mRNA_P-fluviatile_contig72.13867.1|Name=mRNA_P-fluviatile_contig72.13867.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=606bp|location=Sequence derived from alignment at P-fluviatile_contig72:341849..342681- (Porterinema fluviatile SAG_2381)
CCGGCCAAGGAGGCGAAGGCGGCGGCGAACACGATGCACGGGAACATCGT
CAACTGCTGGGCCGCAGCAACAAACAAGCCGCCGGCCAAGGAGGCGAAGG
CGGCGGCGAACACGATGCACGGGAACATCGTCAACTGCTGGGCCGCAGCA
ACAAACAAGCCGAGTACCCGCAAAGGCATCGTGGAGGAAGTTACCCGCGT
CCACTGTCCCATCGCACTACCTCCTCCCAAGTTGAATTGCCTGTACTGCC
CGGAGACCTTCGCCTCCGAACAAGGTCGATCGCTACACTGTAGTGTCGTT
CACCCAGCTCCTCTTCGGCATCTTGGACGAGGGCTCAGGCGCGCCCTCGC
GACGGGTGGGACCATGACGACTCCACCTTGGCACAGTACCCGCAAAGGCA
TCGTGGAGGAAGTTACCCGCGTCCACTGTCCCATCGCACTACCTCCTCCC
AAGTTGAATTGCCTGTACTGCCCGGAGACCTTCGCCTCCGAACAAGGTCG
ATCGCTACACTGTAGTGTCGTTCACCCAGCTCCTCTTCGGCATCTTGGAC
GAGGGCTCAGGCGCGCCCTCGCGACGGGTGGGACCATGACGACTCCACCT
TGGCAC
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