mRNA_P-fluviatile_contig72.13862.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig72.13862.1
Unique NamemRNA_P-fluviatile_contig72.13862.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig72.13862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig72contigP-fluviatile_contig72:310743..313461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size408
Cds size315
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig72.13862.1prot_P-fluviatile_contig72.13862.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig72 310743..313368 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817161.6154497-CDS-P-fluviatile_contig72:310742..3108711622817161.6154497-CDS-P-fluviatile_contig72:310742..310871Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 310743..310871 -
1693571327.2273085-CDS-P-fluviatile_contig72:310742..3108711693571327.2273085-CDS-P-fluviatile_contig72:310742..310871Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 310743..310871 -
1622817161.6276507-CDS-P-fluviatile_contig72:311663..3118331622817161.6276507-CDS-P-fluviatile_contig72:311663..311833Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 311664..311833 -
1693571327.370302-CDS-P-fluviatile_contig72:311663..3118331693571327.370302-CDS-P-fluviatile_contig72:311663..311833Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 311664..311833 -
1622817161.638747-CDS-P-fluviatile_contig72:313352..3133681622817161.638747-CDS-P-fluviatile_contig72:313352..313368Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 313353..313368 -
1693571327.3834236-CDS-P-fluviatile_contig72:313352..3133681693571327.3834236-CDS-P-fluviatile_contig72:313352..313368Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 313353..313368 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817161.6486425-UTR-P-fluviatile_contig72:313368..3134611622817161.6486425-UTR-P-fluviatile_contig72:313368..313461Porterinema fluviatile SAG_2381UTRP-fluviatile_contig72 313369..313461 -
1693571327.393621-UTR-P-fluviatile_contig72:313368..3134611693571327.393621-UTR-P-fluviatile_contig72:313368..313461Porterinema fluviatile SAG_2381UTRP-fluviatile_contig72 313369..313461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig72.13862.1

>prot_P-fluviatile_contig72.13862.1 ID=prot_P-fluviatile_contig72.13862.1|Name=mRNA_P-fluviatile_contig72.13862.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=105bp
MVDATHQWKALLARLDCFHISLVSDIPLVVARANLRRLGSSAERPGQDEV
DKIRASFDRAHEATKVHVNSLRAKNYRIDEADPDEMHGYAVAVHLRNVVG
EVGLC
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mRNA from alignment at P-fluviatile_contig72:310743..313461-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig72.13862.1 ID=mRNA_P-fluviatile_contig72.13862.1|Name=mRNA_P-fluviatile_contig72.13862.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2719bp|location=Sequence derived from alignment at P-fluviatile_contig72:310743..313461- (Porterinema fluviatile SAG_2381)
GCGAGCAGGGCGAAAACCACGAGGGAGGAGGGAAAGACAGAGAGCACCTA
ACGACTGTCGTGCAGAAGCTGTATACGGGGCAATTATTCCCCGATGGTGG
ACGCAACTCGTGAGTCAAGCATTTCAACTAGAATCTAGATACACTTGTTT
AGTTGAGTTGGACAAATCCGACCAGCGTTTAACTTAACGGAACGATTGCC
GGCGTGTTTTCATGAAGTAGATTGGGGTGGAGTTGACCAGTCCAATGGCT
CTTCAACAGCCGGATCGATGGTTTTGTCGGCGCCGCATAAGGCGGAGAGC
CATCGCGCGCGTGTGTGTTTTCATGTCAAGGATCACGAGAGATTTTCCGC
TCGCTCTCTCGCGTCGCTCGCTGGGACTCCTACCCTAGCCTGTCAAGTTA
TCGTCTAATCTAGGTGTGTAGCGTGCGGGGTCCGCCGCGCTTGGATTCGC
AGACAGAACAGGAGGATCCGAAGTAGTCAAATATACAGAAGGGATGGTAT
AGAGTGATCTTGCAAGAGCGGCAAGAGCGGCAGCAATGAAGAAGCCGTTG
GATTTCCAACAGAGCGGGGGGGGCAGAGGTCCACGATACAGTAACAAAGA
TTAGAGATCTAGATCTAGACTACCGCTCTTTCTCGTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTTTCTCTCTCCTGCCCTCCCTCCCCTGGTGTGTGT
TTTGTGTGTGACCCTCGGAAAGATCCCTGCCGAGGAGGTGCATCCGTTTC
CGGTGAACGAGATGGGCTTGACTACACAATCGGCTAGTCTTGATGCCATG
GTACTTCTTTCAGTTCGTGCTATGTGATGCGAAAGGGAAATCGACGCAAA
AATGGGTGACGCAAGTTTGCCGGGAGAATGACCTCTGTTTCCCACCACTT
TTGCCCTCTAGTCTAGGCCTGATTTGCCATCCAAACATGAACTGCTGCTG
TCGAAACGGGAACGCTGCGTCACATCTCTCGGAGGGTAGGCAAACCTCTC
GGCGGGGTGGTGTGGTCCCAGCGCGGAATGAAGGTCCATTTTAAAAGACG
CAAGGAACAGGCTTCAATCGGCTGAAAAAATTGTGCTGGTGCTGGTAAAC
TTATCAGATCAGGCGTGAGGGCACATGCCTACTCGTGACGTTTATTGCGT
ACTCGGTGGTGTGTTGCATTTTGACGAACAAACGATGCCTCAACATCGTC
AATCCTTCGCCGGTCCTTTGCCGTTCCTCGGCATGGTTTGACGTTCCCCA
AATAAGGTCTTCGGACGCGGGAGAAGGCGCAGGAATATCTGTAACCTGGT
CATCTATGATACGATGGTCCCTCCCTTCGTTCACGAGCGGCGCTCGCGTC
CCCGCCTTCTGCCTTCTCCAAGTCCATGACCGAGAAACATCACCATTCAA
TATTCAACACTATTAATATATCTGACAAAACAAACACGAATCAGAACTAG
CCTTCTGTGGAAAAAACGACAGGAACGCCGCGATTGCACTGCTGAATGTT
CCATTGTTATTTGCCCGAAATCGATCAGACCAATGGAAGGCGTTGCTGGC
CCGGCTGGATTGCTTCCACATCTCCCTGGTGAGCGACATTCCGTTAGTCG
TCGCGAGGGCCAATCTCCGCCGCCTCGGGTCCTCTGCCGAACGCCCGGGG
CAGGACGAAGTGGACAAGATAAGGGCCTCCTTCGATCGCGCACACGAGGT
GGGTAGTCGTGAATGTACGCGTGGGCATGTGTACGTGCAGTTTTTAATAT
TTGTTCCGCTTGGAGTGATGGTGTCTGGCTTTGTGCGCCCGAGATTTCTG
GAAGTTGCGGCTGTGTTAGAAAACATTAACGAGGTGAAGGGTGGGAATGA
GGGTGGGAGTATGGGGGCGGAGGGGGCCGGAGAGTTGGGGTCGACTTCGG
GTAGTGCGGCACCCCAGCACACTTGTTGCTGAATGGCACTATGGTGGCCT
TTCTTGGTTGTATTTGCTTTGTGGAGGTGAACCTCCTGTTGTAAACAAGA
CGGAAATCTAGAGACCAAGGGCAACGTACATCGTGAGAGGGCGACGTACC
TGGGTAAACTTATGAAACCATCTGAACAAGCAGGCCTTCCCCTCCGAATG
GCACAACTCTCCCGCGAAGGTTGGGCAACCTGGGGAACATATTTTTCAAT
TTCGCATCCGCTGCCGCTGTGCTTGCGTGTGACTACTCGCCGGCCGCACA
TGCCTGGACGCAAACGCGAGAGTGGGGGACATTTCACTATGTTTTACAGC
TACTGCTGTACCCTCGATTGGCTTCTGTTCATCTCACCGACGGCCGGGCG
AAGCAGGCAACGAACAACAGCTGATGCAGGGCTGTCAAGCCTGCTTGAGA
GATTCAGTCAGTGATGGCGATACTTTGGCAAGAACGGTGTAATAGCCACA
CACACGCCCCACCCTCCCGGTTCAAAGGACTTGAGCCCGTGGTGAACAAA
AAATCGCGTAATCGTTGAAAATCATCCCACAAAAACGCAGGCCACCAAGG
TGCATGTCAATTCGCTGCGCGCCAAAAACTACCGGATCGACGAAGCTGAC
CCCGATGAGATGCACGGCTACGCGGTCGCGGTGCACCTTCGGAACGTCGT
GGGGGAAGTGGGGCTGTGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig72:310743..313461-

>mRNA_P-fluviatile_contig72.13862.1 ID=mRNA_P-fluviatile_contig72.13862.1|Name=mRNA_P-fluviatile_contig72.13862.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=630bp|location=Sequence derived from alignment at P-fluviatile_contig72:310743..313461- (Porterinema fluviatile SAG_2381)
ATGGTGGACGCAACTCATGGTGGACGCAACTCACCAATGGAAGGCGTTGC
TGGCCCGGCTGGATTGCTTCCACATCTCCCTGGTGAGCGACATTCCGTTA
GTCGTCGCGAGGGCCAATCTCCGCCGCCTCGGGTCCTCTGCCGAACGCCC
GGGGCAGGACGAAGTGGACAAGATAAGGGCCTCCTTCGATCGCGCACACG
AGACCAATGGAAGGCGTTGCTGGCCCGGCTGGATTGCTTCCACATCTCCC
TGGTGAGCGACATTCCGTTAGTCGTCGCGAGGGCCAATCTCCGCCGCCTC
GGGTCCTCTGCCGAACGCCCGGGGCAGGACGAAGTGGACAAGATAAGGGC
CTCCTTCGATCGCGCACACGAGGCCACCAAGGTGCATGTCAATTCGCTGC
GCGCCAAAAACTACCGGATCGACGAAGCTGACCCCGATGAGATGCACGGC
TACGCGGTCGCGGTGCACCTTCGGAACGTCGTGGGGGAAGTGGGGCTGTG
CGCCACCAAGGTGCATGTCAATTCGCTGCGCGCCAAAAACTACCGGATCG
ACGAAGCTGACCCCGATGAGATGCACGGCTACGCGGTCGCGGTGCACCTT
CGGAACGTCGTGGGGGAAGTGGGGCTGTGC
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