mRNA_P-fluviatile_contig72.13847.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig72.13847.1
Unique NamemRNA_P-fluviatile_contig72.13847.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig72.13847.1 vs. uniprot
Match: A0A6H5KQ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ72_9PHAE)

HSP 1 Score: 511 bits (1315), Expect = 6.350e-178
Identity = 256/314 (81.53%), Postives = 277/314 (88.22%), Query Frame = 1
Query:    1 MSRPMDEEESSLLLILLDASPTFWTKREGARRSQNERPESGELKLSSFQDTVEATLMFVESYLMMHRQNEVCFVACTARESTIVFPTAETEREQRSLGSGSMSTKEFHDCLWEGLYHVVKKAHAAGEAG---EGCALAGGLSKGLCYVNRKLRESPSIQA---RALVLSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHRGVGIVPYMFSTFLPSQSCRKYLKLRKQQSVDFRAACFCHKRVVEIAYVCSVCLSVFCEFSPVCTTCGTRAWPQKVARGRKRPAGGVGAPNGR 924
            MSRPMDEEE SLLLI+LDAS  FWTKRE  RR Q +RPESGE+KLSSFQDTVEATLMFVESYLMMHR+NEVCFVACTARESTI+FPT   EREQRSLG GS+STKEF +CLW+GL  VV++ HAA  AG   EGCALAG LSKGLCYVN+K+RES SIQA   RALVLSG+PDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEH+GVG+  YMF+TFLPSQSCRKYLKLR QQSVDFRAACFCHKRVV+IAYVCSVCLSVFCEFSPVCTTCGTRAWP+K+ RG+ +   G    NGR
Sbjct:    1 MSRPMDEEEPSLLLIILDASSAFWTKREAVRRRQKQRPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAADAAGGGDEGCALAGSLSKGLCYVNKKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKALAGTTVANGR 314          
BLAST of mRNA_P-fluviatile_contig72.13847.1 vs. uniprot
Match: D7FYW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW3_ECTSI)

HSP 1 Score: 353 bits (906), Expect = 2.330e-117
Identity = 181/223 (81.17%), Postives = 195/223 (87.44%), Query Frame = 1
Query:    1 MSRPMDEEESSLLLILLDASPTFWTKREGARRSQNERPESGELKLSSFQDTVEATLMFVESYLMMHRQNEVCFVACTARESTIVFPTAETEREQRSLGSGSMSTKEFHDCLWEGLYHVVKKAHAAGEAG---EGCALAGGLSKGLCYVNRKLRESPSIQARALVLSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHRGVGI 660
            MSRPMDEEE SLLLI+LDAS  FWTKRE  RR Q ERPESGE+KLSSFQDTVEATLMFVESYLMMHR+NEVCFVACTARESTI+FPT   EREQR+LG GS+STKEF DCLW+GL  VV++ HAA EAG   EGCALAG LSKGLCY+NRK+RES SIQARALVLSG+PDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTG    +  G G+
Sbjct:    1 MSRPMDEEEPSLLLIILDASSAFWTKREAVRRRQKERPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRTLGRGSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYINRKMRESSSIQARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGKGARKTTGTGM 223          
BLAST of mRNA_P-fluviatile_contig72.13847.1 vs. uniprot
Match: A0A835ZC01_9STRA (Putative general transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC01_9STRA)

HSP 1 Score: 269 bits (688), Expect = 1.270e-83
Identity = 134/289 (46.37%), Postives = 193/289 (66.78%), Query Frame = 1
Query:   19 EEESSLLLILLDASPTFWTKREGARRSQNERPESGELKLSSFQDTVEATLMFVESYLMMHRQNEVCFVACTARESTIVFPTAETEREQRSLGSGSMSTKEFHDCLWEGLYHVVKKAHAAGEAGEGCA------LAGGLSKGLCYVNRKLRESPSIQARALVLSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHRGVGIVPYMFSTFLPSQSCRKYLKLRKQQSVDFRAACFCHKRVVEIAYVCSVCLSVFCEFSPVCTTCGTRAWPQ 867
            +E+ SLL+++ DAS   W  ++      +         + +FQ T+EA ++F++SYL+MHR+N++  VAC    S +VFPT   E++  SL +G +S+K    C+ +GL  ++  A A G A    A      +A  LS+ LC+ +RK+ E+PS+Q R LV+   PD PE+YN+VMN IFSAQKA + VDC  +G  S F+QQAA +TGG+Y   +   ++  + +  LPSQ+CRKYL+ + Q++VDFRAACFCH+R++EIAYVCSVCLSVFCEFSP+C TCGTRA P+
Sbjct:    2 DEDPSLLVVVFDASQGAWAAKDALAAQGS--------TVGTFQGTLEAMMVFLQSYLLMHRRNDIAVVACGEAGSRMVFPTPAIEKDNVSLATGGVSSKRVQSCIVDGLRELMS-ASACGTASVQPAVSSKAPIAKALSQALCFTHRKITENPSVQTRLLVVQAGPDAPESYNAVMNCIFSAQKAQIPVDCLCVGPDSVFMQQAADVTGGVYCHVQEPNVLQQLLTLILPSQACRKYLRTKGQETVDFRAACFCHRRLIEIAYVCSVCLSVFCEFSPICATCGTRAVPK 281          
BLAST of mRNA_P-fluviatile_contig72.13847.1 vs. uniprot
Match: A0A5D6XQC8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQC8_9STRA)

HSP 1 Score: 220 bits (561), Expect = 2.090e-64
Identity = 129/304 (42.43%), Postives = 179/304 (58.88%), Query Frame = 1
Query:   16 DEEESSLLLILLDASPTFWTKREGARRSQNERPESGELKLSSFQDTVEATLMFVESYLMMHRQNEVCFVACTARESTIVFPTAETEREQRSLGSGSMSTKEFHDCLWEGLYHVVKKAHAAGEAG------EGCALAGGLSKGLCYVNRKLRESPSIQARALVLSGAPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTGGLY---LEHRGVGIVPYMFSTFLPSQSCRKYLKLRKQQSVDFRAACFCHKRVVEIAYVCSVCLSVFCEFSPVCTTCGTRA--WPQKVARGRKR 891
            D     LL+++LD +P +W     AR       + G+   S+FQ  V +TL+FV +YL++HR N +  VA  A  + +++P AE   +Q + GS   S K            V++K  A G A          A+A  LS+ LC++NR +RE   ++ R LV+  +PDV + Y S+MN IFSAQK  V VD C +  E S+FLQQAAYLTGG+Y   ++H G  ++ Y+ S +LP  S RK LKL  Q SVDFRA CFCHK V+  A+VC VCLS+FCEF P+C+TCG R+   P K  + +KR
Sbjct:   23 DAVSEGLLVLVLDTNPRYWFAEGQAR-------DGGD---SAFQQLVASTLVFVNAYLLLHRSNRIVVVAAHAGRAEMLYPDAE---QQDTSGSAEQSAKVNTS--------VLQKLRALGNAPIDASKPNATAIAASLSRALCFINRAIREQSDLRPRVLVIQKSPDVAQHYISIMNGIFSAQKKSVAVDACVLASEHSSFLQQAAYLTGGIYYKPIDHSG--LLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKEVISTAFVCPVCLSLFCEFQPICSTCGIRSRIQPAKKLQQKKR 303          
BLAST of mRNA_P-fluviatile_contig72.13847.1 vs. uniprot
Match: H3GBC5_PHYRM (Uncharacterized protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3GBC5_PHYRM)

HSP 1 Score: 211 bits (537), Expect = 5.640e-61
Identity = 115/291 (39.52%), Postives = 168/291 (57.73%), Query Frame = 1
Query:   34 LLLILLDASPTFWTKREGARRSQNERPESGELKLSSFQDTVEATLMFVESYLMMHRQNEVCFVACTARESTIVFPTAETEREQRSLGSGSMSTKEFHDCLWEGLYHVVKKAHAAGEAGEGCALAGGLSKGLCYVNRKLRESPSIQARALVLSGAPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTGGLYLEHRGV-GIVPYMFSTFLPSQSCRKYLKLRKQQSVDFRAACFCHKRVVEIAYVCSVCLSVFCEFSPVCTTCGTRAWPQKVARG--RKRP 894
            LL++++D SP  W  + G           G    +  Q  + +TL+FV SYL++HR N +  +A  A +S +++P    + EQ      +    + +  + + L  +        +     A+A  +S+ LC++NR + E P ++ R LV+  +PDV E Y ++MN IFSAQK  V VD C +  E S+F+QQAAYLTGG+Y +  G  G++ Y+ S +LP  S RK LKL  Q SVDFRA CFCH+ V+  AYVC VCLS+FCEF P+C+TCG R+  Q    G  +KRP
Sbjct:   21 LLVLVVDTSPVHWFAQGG-----------GAADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYP----DPEQEDTSGNAEQAAKVNAGVMQRLQQLSDAPLDPAKPNR-TAIAASISRALCFINRAINEEPDLRPRILVVQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILAAEHSSFMQQAAYLTGGIYYKPNGPSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCGIRSHIQPKKNGVLKKRP 295          
BLAST of mRNA_P-fluviatile_contig72.13847.1 vs. uniprot
Match: A0A421GZV4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GZV4_9STRA)

HSP 1 Score: 209 bits (531), Expect = 4.210e-60
Identity = 118/296 (39.86%), Postives = 166/296 (56.08%), Query Frame = 1
Query:   19 EEESSLLLILLDASPTFWTKREGARRSQNERPESGELKLSSFQDTVEATLMFVESYLMMHRQNEVCFVACTARESTIVFPTAETEREQRSLGSGSMSTKEFHDCLWEGLYHVVKKAHAAGEAGEGCALAGGLSKGLCYVNRKLRESPSIQARALVLSGAPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTGGLYLEHRG-VGIVPYMFSTFLPSQSCRKYLKLRKQQSVDFRAACFCHKRVVEIAYVCSVCLSVFCEFSPVCTTCGTRAW--PQKVARGRKRP 894
            E    LL++++D +P  W   EGA          G    +  Q  + +TL+FV SYL++HR N +  +A  A +S +++P    E    S    +         L E     +  A          A+A  LS+ LC++NR + E P ++ R LV+  +PD+ E Y ++MN IFSAQK  V VD C +  E S+F+QQAAYLTGG+Y +     G++ Y+ S +LP  S RK LKL  Q SVDFRA CFCH+ V+  AYVC VCLS+FCEF P+C+TCG R+   P+K    +KRP
Sbjct:   15 EASEGLLVLVIDTNPVHWFA-EGA----------GPADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPDPNQEDTSGSAEQAAKVNAGVMQRLQE-----LSDAPLDPAKPNRTAIAAALSRSLCFINRAINEEPELKPRILVIQKSPDMSEHYIAIMNGIFSAQKRSVAVDACILASEQSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSTRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCGIRSHIQPKKNGLMKKRP 294          
BLAST of mRNA_P-fluviatile_contig72.13847.1 vs. uniprot
Match: K3WG36_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WG36_GLOUD)

HSP 1 Score: 209 bits (532), Expect = 4.650e-60
Identity = 123/304 (40.46%), Postives = 176/304 (57.89%), Query Frame = 1
Query:   13 MDEEESSLLLILLDASPTFWTKREGARRSQNERPESGELKLSSFQDTVEATLMFVESYLMMHRQNEVCFVACTARESTIVFPTAETEREQRSLGSGSMSTKEFHDCLWEGLYHVVKKAHAAGEAG------EGCALAGGLSKGLCYVNRKLRESPSIQARALVLSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLG-ESSTFLQQAAYLTGGLYLEHRG-VGIVPYMFSTFLPSQSCRKYLKLRKQQSVDFRAACFCHKRVVEIAYVCSVCLSVFCEFSPVCTTCGTRAWPQ---KVARGRKR 891
            +D  +  LL++++D +P +W   E       +R   G     +FQ  V +TL+FV SYL++HR N +  +A  A ++ +++P      +  + GS   S K            V++K  A  E           A+A  +S+ LC++NR + E   ++ R LV+  +PDV E Y S+MN IFSAQK GV VD  VL  + S+FLQQAAYLTGG+Y +     G++ Y+ S +LP  S RK LKL  Q SVDFRA CFCHKRV+  A+VC VCLS+FCEF P+C+TCG R+  Q   K+ + +KR
Sbjct:   26 IDVVQEGLLVLVVDTNPQYWFVNE-------QRSGGGP---QAFQQLVASTLVFVNSYLLLHRSNRIVIIAAHAGKAEMLYPDPN---QGDTSGSAEQSAKVNAK--------VMQKLQALSELPVDPAKPNATAIAASISRALCFINRAINEQSDLRPRILVIQKSPDVSEHYISIMNGIFSAQKKGVAVDACVLARDQSSFLQQAAYLTGGIYYKPNDHSGLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKRVISTAFVCPVCLSLFCEFQPICSTCGIRSRIQPAKKMQQQKKR 308          
BLAST of mRNA_P-fluviatile_contig72.13847.1 vs. uniprot
Match: F0WU60_9STRA (General transcription factor IIH subunit putative n=2 Tax=Albugo TaxID=65356 RepID=F0WU60_9STRA)

HSP 1 Score: 208 bits (529), Expect = 6.350e-60
Identity = 116/302 (38.41%), Postives = 183/302 (60.60%), Query Frame = 1
Query:   13 MDEEESSLLLILLDASPTFWTKR-EGARRSQNERPESGELKLSSFQDTVEATLMFVESYLMMHRQNEVCFVACTARESTIVFPTAETEREQRSLGSGSMSTKEFHDCLWEGLYHVVKKAHAAGEAGEGCALAGGLSKGLCYVNRKLRESPSIQARALVLSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGES-STFLQQAAYLTGGLYLEHRGV-GIVPYMFSTFLPSQSCRKYLKLRKQQSVDFRAACFCHKRVVEIAYVCSVCLSVFCEFSPVCTTCGTRAW---PQKVARGRKRPAG 900
            M++  ++ L+++LD +P+ W +  +G    Q++         S FQ TV++ L+FV SYL+++R N +  +A  A  S  ++P A +E E  S     +      + + + L  + ++ H         +++G +S+GLC +NR L+E+  +  R  V+  +PDVPE Y S+MN+IFSAQK  V +D  +L E  S F+QQA YLTGG+Y + R + G++ Y+ + +LP  + RK L+   Q+SVDFRA CFCHK+ V  A+VC VCLS+FC+F P+C+TCG R+    P+K+A   KRP G
Sbjct:    1 MEQTGAAFLVLILDTNPSHWWRNVDGMPTDQSD---------SLFQRTVKSVLIFVSSYLLLNRSNRLILLAAHAGSSVTLYPDALSESESESGDQIGL----IRNIVLKNLLALSEQTHDVTSKST-TSISGSISRGLCCMNRVLKENAQLCPRIFVIQRSPDVPEHYISIMNSIFSAQKKTVAIDACILSEEHSPFMQQATYLTGGIYYKPRVIDGLLQYLITLYLPDPNMRKMLRFPSQESVDFRAMCFCHKKAVSTAFVCPVCLSLFCQFQPICSTCGVRSRLSIPRKLAT-PKRPRG 287          
BLAST of mRNA_P-fluviatile_contig72.13847.1 vs. uniprot
Match: A0A662YF30_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YF30_9STRA)

HSP 1 Score: 207 bits (527), Expect = 2.070e-59
Identity = 115/296 (38.85%), Postives = 171/296 (57.77%), Query Frame = 1
Query:   34 LLLILLDASPTFWTKREGARRSQNERPESGELKLSSFQDTVEATLMFVESYLMMHRQNEVCFVACTARESTIVFPTAETEREQRSLGSGSMSTKEFHDCLWEGLYHVVKKAHAAGEAG------EGCALAGGLSKGLCYVNRKLRESPSIQARALVLSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLG-ESSTFLQQAAYLTGGLYLEHRGVG-IVPYMFSTFLPSQSCRKYLKLRKQQSVDFRAACFCHKRVVEIAYVCSVCLSVFCEFSPVCTTCGTRA--WPQKVARGRKR 891
            LL++++D +P  W  + G    +           ++FQ  + +TL+FV SYL++HR N +  +A  A +S +++P  +   +  + GS   + K            V+++    G+A          A+A  LS+ LC++NR + + P ++ R LV+  APDV E Y ++MN IFSAQK  V VD  +L  E S+F+QQAAYLTGG+Y +    G ++ Y+ S +LP  S RK LKL  Q SVDFRA CFCH+ V+  A+VC VCLS+FCEF P+C+TCG R+   P K    +KR
Sbjct:   28 LLVLVIDTNPLHWFAQGGGTSDR-----------TAFQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPDPD---QADTSGSAEQAAKVNAG--------VMRRLQELGDAELDPAKPNRTAIAASLSRSLCFINRAINDQPDLRPRILVIQKAPDVSEHYIAIMNGIFSAQKKSVAVDACILSAEHSSFMQQAAYLTGGIYYKPNDAGGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAFVCPVCLSLFCEFRPICSTCGIRSRIQPNKSGLPKKR 301          
BLAST of mRNA_P-fluviatile_contig72.13847.1 vs. uniprot
Match: A0A8K1C5A8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5A8_PYTOL)

HSP 1 Score: 208 bits (530), Expect = 2.550e-59
Identity = 121/307 (39.41%), Postives = 170/307 (55.37%), Query Frame = 1
Query:   13 MDEEESSLLLILLDASPTFWTKREGARRSQNERPESGELKLSSFQDTVEATLMFVESYLMMHRQNEVCFVACTARESTIVFPTAETEREQRSLGSGSMSTKEFHDCLWEGLYHVVKKAHAAGEAG------EGCALAGGLSKGLCYVNRKLRESPSIQARALVLSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLG-ESSTFLQQAAYLTGGLYLEHRG-VGIVPYMFSTFLPSQSCRKYLKLRKQQSVDFRAACFCHKRVVEIAYVCSVCLSVFCEFSPVCTTCGTRA--WPQKVARGRKRPAGG 903
            ++     LL+I++D +P  W      + +Q +          SFQ  + +TL+FV SYL++HR N +  +A  A  S +++P      +  + G+   S K  +         V++K  A  E           A+A  +S+ LC++NR + E+  +  R LV+  +PDV E Y S+MN IFSAQK  V VD  +L  E S F+QQAAYLTGG+Y +     G++ Y+ S +LP  S RK LKL  Q SVDFRA CFCH+ VV  AYVC VCLS+FCEF P+C+TCG R+   P K     KRP  G
Sbjct:   63 IETSSEGLLVIVIDTNPQQWFANAKLQNAQTQ----------SFQQLISSTLVFVNSYLLLHRNNRIVIIAAHAGRSEMLYPDPA---QNDTSGTAEQSLKVTN--------RVMEKLKALSEIPMDPSKPNATAIAASISRSLCFINRAITENADLSPRILVIQKSPDVSEHYISIMNGIFSAQKKNVAVDACILSREHSPFMQQAAYLTGGIYYKPNDHSGLLEYLLSIYLPDPSLRKLLKLPTQDSVDFRAMCFCHQEVVSTAYVCPVCLSLFCEFKPICSTCGIRSRIQPSKKLPPSKRPKSG 348          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig72.13847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQ72_9PHAE6.350e-17881.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYW3_ECTSI2.330e-11781.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZC01_9STRA1.270e-8346.37Putative general transcription factor IIH subunit ... [more]
A0A5D6XQC8_9STRA2.090e-6442.43Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
H3GBC5_PHYRM5.640e-6139.52Uncharacterized protein n=17 Tax=Phytophthora TaxI... [more]
A0A421GZV4_9STRA4.210e-6039.86Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
K3WG36_GLOUD4.650e-6040.46Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
F0WU60_9STRA6.350e-6038.41General transcription factor IIH subunit putative ... [more]
A0A662YF30_9STRA2.070e-5938.85Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A8K1C5A8_PYTOL2.550e-5939.41Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig72contigP-fluviatile_contig72:43770..48229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score354.0
Seed ortholog evalue7.2e-95
Seed eggNOG ortholog2880.D7FYW3
Preferred nameTFB4
KEGG rclassRC00020,RC00041
KEGG koko:K01054,ko:K03143
KEGG ReactionR01351
KEGG Pathwayko00561,ko01100,ko03022,ko03420,ko04714,ko04723,ko04923,ko05203,map00561,map01100,map03022,map03420,map04714,map04723,map04923,map05203
KEGG ModuleM00098,M00290
GOsGO:0000109,GO:0000112,GO:0000428,GO:0000439,GO:0000988,GO:0000990,GO:0000991,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006412,GO:0006464,GO:0006468,GO:0006518,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016310,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070816,GO:0071704,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1990234,GO:1990391,GO:2000112,GO:2001141
EggNOG free text desc.phosphorylation of RNA polymerase II C-terminal domain
EggNOG OGsCOG5242@1,KOG2487@2759
EC3.1.1.23
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTFIIH subunit Tfb4/p34
Ec32 orthologEc-19_002710.1
Exons7
Model size1509
Cds size930
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig72.13847.1prot_P-fluviatile_contig72.13847.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig72 43770..47650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817162.821911-CDS-P-fluviatile_contig72:43769..438771622817162.821911-CDS-P-fluviatile_contig72:43769..43877Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 43770..43877 +
1693571328.123729-CDS-P-fluviatile_contig72:43769..438771693571328.123729-CDS-P-fluviatile_contig72:43769..43877Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 43770..43877 +
1622817162.8361657-CDS-P-fluviatile_contig72:44499..446331622817162.8361657-CDS-P-fluviatile_contig72:44499..44633Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 44500..44633 +
1693571328.1340854-CDS-P-fluviatile_contig72:44499..446331693571328.1340854-CDS-P-fluviatile_contig72:44499..44633Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 44500..44633 +
1622817162.845731-CDS-P-fluviatile_contig72:44882..450161622817162.845731-CDS-P-fluviatile_contig72:44882..45016Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 44883..45016 +
1693571328.1426027-CDS-P-fluviatile_contig72:44882..450161693571328.1426027-CDS-P-fluviatile_contig72:44882..45016Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 44883..45016 +
1622817162.8555548-CDS-P-fluviatile_contig72:45551..456431622817162.8555548-CDS-P-fluviatile_contig72:45551..45643Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 45552..45643 +
1693571328.1512148-CDS-P-fluviatile_contig72:45551..456431693571328.1512148-CDS-P-fluviatile_contig72:45551..45643Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 45552..45643 +
1622817162.865438-CDS-P-fluviatile_contig72:46124..462811622817162.865438-CDS-P-fluviatile_contig72:46124..46281Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 46125..46281 +
1693571328.1599562-CDS-P-fluviatile_contig72:46124..462811693571328.1599562-CDS-P-fluviatile_contig72:46124..46281Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 46125..46281 +
1622817162.875707-CDS-P-fluviatile_contig72:46683..468491622817162.875707-CDS-P-fluviatile_contig72:46683..46849Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 46684..46849 +
1693571328.1716068-CDS-P-fluviatile_contig72:46683..468491693571328.1716068-CDS-P-fluviatile_contig72:46683..46849Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 46684..46849 +
1622817162.8857553-CDS-P-fluviatile_contig72:47511..476501622817162.8857553-CDS-P-fluviatile_contig72:47511..47650Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 47512..47650 +
1693571328.1813731-CDS-P-fluviatile_contig72:47511..476501693571328.1813731-CDS-P-fluviatile_contig72:47511..47650Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 47512..47650 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817162.8954682-UTR-P-fluviatile_contig72:47650..482291622817162.8954682-UTR-P-fluviatile_contig72:47650..48229Porterinema fluviatile SAG_2381UTRP-fluviatile_contig72 47651..48229 +
1693571328.1891007-UTR-P-fluviatile_contig72:47650..482291693571328.1891007-UTR-P-fluviatile_contig72:47650..48229Porterinema fluviatile SAG_2381UTRP-fluviatile_contig72 47651..48229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig72.13847.1

>prot_P-fluviatile_contig72.13847.1 ID=prot_P-fluviatile_contig72.13847.1|Name=mRNA_P-fluviatile_contig72.13847.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=310bp
MSRPMDEEESSLLLILLDASPTFWTKREGARRSQNERPESGELKLSSFQD
TVEATLMFVESYLMMHRQNEVCFVACTARESTIVFPTAETEREQRSLGSG
SMSTKEFHDCLWEGLYHVVKKAHAAGEAGEGCALAGGLSKGLCYVNRKLR
ESPSIQARALVLSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTF
LQQAAYLTGGLYLEHRGVGIVPYMFSTFLPSQSCRKYLKLRKQQSVDFRA
ACFCHKRVVEIAYVCSVCLSVFCEFSPVCTTCGTRAWPQKVARGRKRPAG
GVGAPNGRS*
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mRNA from alignment at P-fluviatile_contig72:43770..48229+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig72.13847.1 ID=mRNA_P-fluviatile_contig72.13847.1|Name=mRNA_P-fluviatile_contig72.13847.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4460bp|location=Sequence derived from alignment at P-fluviatile_contig72:43770..48229+ (Porterinema fluviatile SAG_2381)
ATGTCGCGGCCAATGGATGAGGAGGAATCGAGCCTTCTTTTGATCTTATT GGATGCATCTCCGACCTTCTGGACGAAACGAGAAGGTGCCCGGAGAAGCC AGAATGAGGTGTGAACCAAACAAAAATCGTAATCAACCTCCCGTACCACG GCGCAACAGCAACGCTGGCCGGCGGTTGGGCAGCTCACCTTACGGGATTC AGATTGACCCGGACTTCTATTGCCCTTACGCATGGCAGAGTGATTGCAGG CCCACAATCAATTTCCCGAAATGTGCAAAATTGGCTTTCCGTGGCTAAAC TGGCAAATTCGCACACAACCAGCGTTGTGGATGCAATATCGAGCACACGT GGTTGTCGAGAGGATAATCCAAATGAAAACGTCCTTTGAGTTCGATCGAT GGTGAACTCAACGAGACTGCTTGGACAAATAATGCCAGAGATAGGGAGCC ACACGGTAAAACGTTAGTTCCATGATCAACCTTTGACGCCCGCTGAGAGG AGCCGAACCGAAACACGAGATAATATTAAGGGCGTCCGAAGGGACCGTTT GCAACATAAACGAGCAAATGAGATTTGAGAGAAGTAATGTTTCCTTCCCC ATGAGTCGTATCGCAGGTACGCGTTCCTTTTTCGATGTCAACGTTTCTCC TGGCTCCTAAGCGCTGAACCGGCGAGCGTTCCATGTCATCCCCTGCCTCC CCCACGTGGGATGCCCTGAACTTGCGTCAGCGACCAGAGTCTGGAGAGTT GAAGCTGTCTTCCTTCCAAGACACGGTGGAGGCTACCCTCATGTTCGTGG AGAGCTACCTTATGATGCATAGACAGAATGAGGTTTGCTTCGTCGCCTGC ACTGCCCGAGAGAGGTGCGACTCAACGAAAGATCGAACGCGTTAACAGCG ATGAACGGAGACTTTGGCTGCAGTGTGTCCCCGGCTAGCTTTGCCCCTTT CTGAGTCAAGCGCCTTGAAAATTTTATGTGTCAACTGTGTTGCCTGATAT TTTTCTTGCCCCGCTATTGACACTTTTACAGCCAAAGATAAGCTCTAATA TGTTTCTGCACCCACCCACGCCCATCCCGAATCGTCCCGTCTGGACGCAC GTACGCAACTCAGCACCATCGTCTTCCCGACGGCAGAAACGGAGCGCGAG CAGCGGTCGCTCGGCAGCGGTTCCATGAGCACCAAGGAGTTCCACGACTG TCTCTGGGAGGGGCTGTACCACGTAGTCAAGAAGGCCCATGCCGCAGGTA GGGAGAAAAGGTAACTCTCGACTTGATGATCGGGCCCAGTCGCTAACACG TACCTCCAGCGGGGAGTCATTGGGTCTTGAATGCTTTCGAGGGGAAGCTC ACCATGTTTGTATGCACATACGACCTGCAAAGGCGAACATGTTATGTTTT GCTACACCCGCTGCCAGGCACGGCGCGGATTGAGCTGCTGACTTCAAGAG GAAGCTCCTAGCACGTCAGATGAAGGGGAGGGCATGCATCGAAGCTCTTG CATGGCAACATGCACCCAACACCTTACGCGTATCGCGTACTGTTTGTTCC GCCCGAAGCTTCGTTGTTTGTGTGTCTTTGTGGCCTACAATTCTTTCGAT TCATTCGAATTTTCGTGATCTGCACATGATCGATCACCCAGCCGGGTATA TCCCACGCTGCGATACGCGTCCGATCGCGCTGGAGGGCTATGATGTCTTG GTGGGCCCTTTTTCGCGCCGCTGTTGCCGCCAGGACCGACCGTTGTTTGT CGTAATCCTGCATTGGCCCTCTCGCGAAGCAGGTGAAGCGGGCGAGGGTT GCGCGCTGGCGGGGGGGCTGTCGAAAGGTCTATGCTATGTCAACAGAAAG TTGCGCGAGTCCCCGTCGATACAGGTGAAGTCTCTCTTGACGGGGGAATT TGTTAGCGGTCGAGACAATTCCGCATCAAAACATCCGCGCAAAGAGCGCC GTTCAGACATCCTGCTCTGCTGAGAACTCTGCTGCTCCAACTCCTGCGGC AGCTTCTGCGAGGAAATCACAGCGTGGGTGAGCCACAGGTTTATATCCAG AGCTCCCGATTGCCGACCCCTGAAAGTCGGCATGCACCACGAGAAATCCT CCCAGTTGTGATTGCTTTTAAGGGCAACAAAAGCGATTCAGACATCGTGA CCACCACTGCTGCTAAGTCAAGTGGGCCGCGGTGACGTCTTGGACGGCTG CATTGCCCCAGATCATCGTAGCATGAAAGCAGGGCGCCGGAAGCACGGGT GCTTCATCCTCATGACGGTTCTGACGGCCGCAGCTCTCATCGCGCTTTTA CCTCTCCTCTCACCCCGCGCTATCTCTTTTTTTGCCGCCACCACACACGC CAAAGGCACGTGCCCTGGTCCTGTCGGGCGCACCCGATGTACCAGAGACG TACAACTCGGTCATGAACGCAATTTTTTCGGCGCAGAAGGCGGGGGTCCT GGTGGACTGCGCGGTGCTCGGGGAGTCGTCGACTTTTCTTCAGCAAGCGG CCTATCTCACAGGTGAGGTTTCACCATTCCTGGTTGTGATGGGCTCATGC ACATAGCTGGCATAGAATCGTCTCTCAAATGGGTGATTAAGAGCCAAGAA GATATTTTTGGATGAAGGGTGCCCCGGTGCCTTTGTCTGCCATTATCGCT CATTTTATTTTCTGTGGGCCGCCCACTCGGAGGTATCTCAGAACTGTCTT GATTTTGTTTTGCCGGACAAAGCGAGACTTCATCGTCGATCAGAGGGGAA CGGTCTTGCTCGAAACGTGAAGATTTTTCTGCGGTATGTTCGTTGGACAC ATCGTCCGATCTCTCACAATCTCTCACTACTGTAAACTGTTTGACGTCTT CCACGACGACCCTTGAGCATACCCAACATGGCACCTCGTACATTTTGCTG GGATTCCGCCTCAGGCGGGCTGTACCTGGAGCACAGAGGAGTCGGCATCG TTCCATACATGTTCTCCACCTTCTTGCCAAGCCAGAGCTGCCGCAAGTAC CTTAAGCTTCGCAAGCAGCAGAGCGTGGATTTCAGGGCAGCGTGCTTCTG CCACAAGCGAGTCGTCGAAATCGCATACGTGTGAGTTGTGTGTTTGAAAC TACCTAACTGGTCCGGCGTTCACCGTGTGCCGCACGCACACGCTAGCCAG CTTCCGGGATTAGGCGTCAGCAATGTGCACAATTGAAGGGGCATTTGGCG AAAAGAAATATTTATACATTTTATTCTCTTTGGCTGCACCCCGACTGTTG AGTCGACTTTCAGCAGCGGACAAAGATACAGGAAATCACACGTCCATATT TCGGTAATTTCGCAGTGGAACATTAATTCGATGGTTCAGTTGGGAGCCTC GGTAGCCTCGTGACGTACCGAGAATGGGGCCTTGGGTTCGAAGTCTCGGC GAACTTACATGAGCTGTCTTCCCCTCGTTTCTGGCGATGAAAAAAGCGAA GGCAAGCAGCGTAAAAGGAATGGAGGGAAGATCAAGAAAATCGTGTCTGA CCGTTCGCCTGTGTGACCCCGACTGCTACTCGCAGGTGTCTAGGGAATGG TTTGAAAATGCCTCCCACATTGAAAAGCAAAGGACGAAAACACAGATCTG TTTGCGGATAATTCACCGCCCGCTCGAGGCTCGTTCAAAGCCCAAAAAAC CTATGCATTGCGCGCTACTCTACTGATCACCCTCGCTTGTTGCCACCTCC TTGATGCCGCGTGAATATTGCATCGTCGGATCTCCCCTGCAGGTGTTCGG TGTGCTTGTCCGTCTTTTGCGAGTTTTCACCAGTTTGTACCACGTGTGGC ACACGGGCATGGCCCCAGAAGGTTGCCCGTGGTAGGAAACGACCGGCTGG TGGGGTGGGGGCGCCGAATGGGCGTTCGTGAACACACGTTACGGGAGTTC CCTGGCGGTAATTGCCGTGGGGAGCCATTCCTGGGAGCAATTGCTGGCTT ACATAGCGGTTGGTTGTTGTGGGGCCGGCGAAGAAGGGTATTTTGCTGAC GACGCCGTGTAGATGCCGGCGGAAGGAATTGATCGGCGACACAACCAACA ACGAAGGATTTGCACCACAACGAACTGTGTTTCGGCACATGATATCTCCC TCCCAAAGAGGTTTGAGTAGATTTGGTCGGCTCCAAACGGACATTCGCAA ACATCTCAGATGATTGAACTCTTGATATTCTCTCTTTTTGATTTGTGCTG TGGCAAGGACCCGGCAAACTTGTTCTTGGCATAGTCTCTCTTGATCTCCC GATTGACGACGAACCAGTACGGGATGGGGGCAGGAGGGTAGGTGAGGGCG AAGATACATTGTTCCTGACGCCTTCGGTTGTAACGAGATGACTTTCACGA TCCTTGAAAATCGGCCAGGAGTAAGAACACGGCGGTGCGCAAAGAAGAAA ATGACGACGGCAGCGACTGGCCTACCGATATCGAAATTGGGGTTTGCTTT GGGTTTTGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig72:43770..48229+

>mRNA_P-fluviatile_contig72.13847.1 ID=mRNA_P-fluviatile_contig72.13847.1|Name=mRNA_P-fluviatile_contig72.13847.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1860bp|location=Sequence derived from alignment at P-fluviatile_contig72:43770..48229+ (Porterinema fluviatile SAG_2381)
ATGTCGCGGCCAATGGATGAGGAGGAATCGAGCCTTCTTTTGATCTTATT
GGATGCATCTCCGACCTTCTGGACGAAACGAGAAGGTGCCCGGAGAAGCC
AGAATGAGATGTCGCGGCCAATGGATGAGGAGGAATCGAGCCTTCTTTTG
ATCTTATTGGATGCATCTCCGACCTTCTGGACGAAACGAGAAGGTGCCCG
GAGAAGCCAGAATGAGCGACCAGAGTCTGGAGAGTTGAAGCTGTCTTCCT
TCCAAGACACGGTGGAGGCTACCCTCATGTTCGTGGAGAGCTACCTTATG
ATGCATAGACAGAATGAGGTTTGCTTCGTCGCCTGCACTGCCCGAGAGAG
CGACCAGAGTCTGGAGAGTTGAAGCTGTCTTCCTTCCAAGACACGGTGGA
GGCTACCCTCATGTTCGTGGAGAGCTACCTTATGATGCATAGACAGAATG
AGGTTTGCTTCGTCGCCTGCACTGCCCGAGAGAGCACCATCGTCTTCCCG
ACGGCAGAAACGGAGCGCGAGCAGCGGTCGCTCGGCAGCGGTTCCATGAG
CACCAAGGAGTTCCACGACTGTCTCTGGGAGGGGCTGTACCACGTAGTCA
AGAAGGCCCATGCCGCAGCACCATCGTCTTCCCGACGGCAGAAACGGAGC
GCGAGCAGCGGTCGCTCGGCAGCGGTTCCATGAGCACCAAGGAGTTCCAC
GACTGTCTCTGGGAGGGGCTGTACCACGTAGTCAAGAAGGCCCATGCCGC
AGGTGAAGCGGGCGAGGGTTGCGCGCTGGCGGGGGGGCTGTCGAAAGGTC
TATGCTATGTCAACAGAAAGTTGCGCGAGTCCCCGTCGATACAGGTGAAG
CGGGCGAGGGTTGCGCGCTGGCGGGGGGGCTGTCGAAAGGTCTATGCTAT
GTCAACAGAAAGTTGCGCGAGTCCCCGTCGATACAGGCACGTGCCCTGGT
CCTGTCGGGCGCACCCGATGTACCAGAGACGTACAACTCGGTCATGAACG
CAATTTTTTCGGCGCAGAAGGCGGGGGTCCTGGTGGACTGCGCGGTGCTC
GGGGAGTCGTCGACTTTTCTTCAGCAAGCGGCCTATCTCACAGGCACGTG
CCCTGGTCCTGTCGGGCGCACCCGATGTACCAGAGACGTACAACTCGGTC
ATGAACGCAATTTTTTCGGCGCAGAAGGCGGGGGTCCTGGTGGACTGCGC
GGTGCTCGGGGAGTCGTCGACTTTTCTTCAGCAAGCGGCCTATCTCACAG
GCGGGCTGTACCTGGAGCACAGAGGAGTCGGCATCGTTCCATACATGTTC
TCCACCTTCTTGCCAAGCCAGAGCTGCCGCAAGTACCTTAAGCTTCGCAA
GCAGCAGAGCGTGGATTTCAGGGCAGCGTGCTTCTGCCACAAGCGAGTCG
TCGAAATCGCATACGTGCGGGCTGTACCTGGAGCACAGAGGAGTCGGCAT
CGTTCCATACATGTTCTCCACCTTCTTGCCAAGCCAGAGCTGCCGCAAGT
ACCTTAAGCTTCGCAAGCAGCAGAGCGTGGATTTCAGGGCAGCGTGCTTC
TGCCACAAGCGAGTCGTCGAAATCGCATACGTGTGTTCGGTGTGCTTGTC
CGTCTTTTGCGAGTTTTCACCAGTTTGTACCACGTGTGGCACACGGGCAT
GGCCCCAGAAGGTTGCCCGTGGTAGGAAACGACCGGCTGGTGGGGTGGGG
GCGCCGAATGGGCGTTCGTGAGTGTTCGGTGTGCTTGTCCGTCTTTTGCG
AGTTTTCACCAGTTTGTACCACGTGTGGCACACGGGCATGGCCCCAGAAG
GTTGCCCGTGGTAGGAAACGACCGGCTGGTGGGGTGGGGGCGCCGAATGG
GCGTTCGTGA
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