mRNA_P-fluviatile_contig72.13846.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig72.13846.1
Unique NamemRNA_P-fluviatile_contig72.13846.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig72.13846.1 vs. uniprot
Match: D7FYW2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYW2_ECTSI)

HSP 1 Score: 343 bits (881), Expect = 7.360e-113
Identity = 181/263 (68.82%), Postives = 207/263 (78.71%), Query Frame = 1 
Query:  208 MKFSMFPYVTAAVGFLCGAESFVVTSMPAMQRRYTEPTRTQSHMI---RSYPSSSGCVVMMGGFGEPVKKKSSKGVGRGQEAYQRQMKSYHGLIKAGAEGCDVYVHREGDDKFIFVGKAAWSSGITAEQALQFQRGLILGHVELLEPLWKEKPAPMRIFTAPINSEVEVARNVHDLVRVLGPGKGKDVKVDHLTPQEVGLKPELYELGEEYYYVRKLPDGKSPAPPAEVMIESMENMVTKGLMPEKDAAATEAAAAATPPAAE 987
            MK S  P    A+G LC  +SF   +     R+    T +  HMI   R   ++S  V+MMGGFG P KKK   GVGRGQ+AYQRQ+KSYHGL +AGAEG DVYVHREGDDKFIF+GKAAWSSGIT +QALQFQRGLILGHVELLEP+WK+KPAPMRIFTAPINSE+EVARN+HDLVRVLGPGKGKDVKVD LTPQEVGL+PELYELGE Y+YVRKL DGK PAPP+EVMIE+M+N+V KG++P K+       AAA PPA E
Sbjct:    1 MKISAVPSAAIALGLLCDVDSFAPLTAGWQLRQ----TSSAWHMIPSGRPRSATSSRVMMMGGFGGPEKKKKVVGVGRGQDAYQRQVKSYHGLTEAGAEGADVYVHREGDDKFIFMGKAAWSSGITVQQALQFQRGLILGHVELLEPMWKDKPAPMRIFTAPINSEIEVARNIHDLVRVLGPGKGKDVKVDKLTPQEVGLRPELYELGEPYFYVRKLDDGKCPAPPSEVMIETMDNLVAKGVVPAKETVD----AAAPPPADE 255
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig72.13846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYW2_ECTSI7.360e-11368.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig72contigP-fluviatile_contig72:23642..27300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_002700.1
Exons4
Model size1560
Cds size783
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig72.13846.1prot_P-fluviatile_contig72.13846.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig72 24212..27093 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817162.7198796-UTR-P-fluviatile_contig72:23641..242111622817162.7198796-UTR-P-fluviatile_contig72:23641..24211Porterinema fluviatile SAG_2381UTRP-fluviatile_contig72 23642..24211 -
1693571328.06386-UTR-P-fluviatile_contig72:23641..242111693571328.06386-UTR-P-fluviatile_contig72:23641..24211Porterinema fluviatile SAG_2381UTRP-fluviatile_contig72 23642..24211 -
1622817162.785369-UTR-P-fluviatile_contig72:27093..273001622817162.785369-UTR-P-fluviatile_contig72:27093..27300Porterinema fluviatile SAG_2381UTRP-fluviatile_contig72 27094..27300 -
1693571328.106669-UTR-P-fluviatile_contig72:27093..273001693571328.106669-UTR-P-fluviatile_contig72:27093..27300Porterinema fluviatile SAG_2381UTRP-fluviatile_contig72 27094..27300 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817162.7339916-CDS-P-fluviatile_contig72:24211..244361622817162.7339916-CDS-P-fluviatile_contig72:24211..24436Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 24212..24436 -
1693571328.0722895-CDS-P-fluviatile_contig72:24211..244361693571328.0722895-CDS-P-fluviatile_contig72:24211..24436Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 24212..24436 -
1622817162.7467778-CDS-P-fluviatile_contig72:24926..250971622817162.7467778-CDS-P-fluviatile_contig72:24926..25097Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 24927..25097 -
1693571328.0806472-CDS-P-fluviatile_contig72:24926..250971693571328.0806472-CDS-P-fluviatile_contig72:24926..25097Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 24927..25097 -
1622817162.760985-CDS-P-fluviatile_contig72:26227..262991622817162.760985-CDS-P-fluviatile_contig72:26227..26299Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 26228..26299 -
1693571328.0887032-CDS-P-fluviatile_contig72:26227..262991693571328.0887032-CDS-P-fluviatile_contig72:26227..26299Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 26228..26299 -
1622817162.7736306-CDS-P-fluviatile_contig72:26778..270931622817162.7736306-CDS-P-fluviatile_contig72:26778..27093Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 26779..27093 -
1693571328.0970347-CDS-P-fluviatile_contig72:26778..270931693571328.0970347-CDS-P-fluviatile_contig72:26778..27093Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 26779..27093 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig72.13846.1

>prot_P-fluviatile_contig72.13846.1 ID=prot_P-fluviatile_contig72.13846.1|Name=mRNA_P-fluviatile_contig72.13846.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=261bp
MKFSMFPYVTAAVGFLCGAESFVVTSMPAMQRRYTEPTRTQSHMIRSYPS
SSGCVVMMGGFGEPVKKKSSKGVGRGQEAYQRQMKSYHGLIKAGAEGCDV
YVHREGDDKFIFVGKAAWSSGITAEQALQFQRGLILGHVELLEPLWKEKP
APMRIFTAPINSEVEVARNVHDLVRVLGPGKGKDVKVDHLTPQEVGLKPE
LYELGEEYYYVRKLPDGKSPAPPAEVMIESMENMVTKGLMPEKDAAATEA
AAAATPPAAE*
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mRNA from alignment at P-fluviatile_contig72:23642..27300-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig72.13846.1 ID=mRNA_P-fluviatile_contig72.13846.1|Name=mRNA_P-fluviatile_contig72.13846.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3659bp|location=Sequence derived from alignment at P-fluviatile_contig72:23642..27300- (Porterinema fluviatile SAG_2381)
GAAAAAAGTGTCTTGAATGGGGGATGTCTACATTTACTCTAATCTCGAGG
GACAACGCCTCGTTGATTGTTTTTGCGCTCTAAGCAAATGGTACATGTAT
AGTATCCCAAGAACGGACACGAACCCATTCAATTGGAGCATGCTGGTTGT
GCCGCGTTGGCGATTGGTTACACCGTGGTTGCGCACCTTGTCCTGCTGGC
CTACGGCATGAAGTTCTCAATGTTTCCTTACGTGACTGCAGCGGTTGGAT
TCCTCTGCGGCGCAGAAAGCTTTGTGGTGACGTCGATGCCGGCCATGCAG
CGGCGATATACTGAACCAACCCGGACGCAGTCGCACATGATCCGCTCCTA
TCCTAGCAGCAGCGGTTGCGTGGTGATGATGGGCGGATTTGGCGAGCCGG
TGAAAAAGAAGAGTTCCAAGGGCGTAGGGAGGGGGCAAGAGGCTTATCAA
CGTCAGATGAAGTCTTACCACGGACTCATAAAGGCTGGCGCTGAAGGATG
TGATGTGTACGTTCATCGTGAGGTGAGAGCGAGACTGCACTGACAGATCA
CTTGTCATCCGAGAGCGAGCGAGCGCTCACCACCCAGTTACGGCGCACCT
ACAAGTATTTGAATCACAAGTTAGTGTGTGGTGTAGACGGCATGTACACC
ACAGAGACGCGATTGGCATATGACTCTCCTTGATGTGTCGTGGTCAGCAT
GTCAGCCCCGTAGGCGACGGAACGGCATATAATGCTGTGAACCGCTTTGG
TCTGCAGCGGTGACGTTGTGTCGTTCCACGACCTTTTCCCGTTACCTGTA
GTGCTGAGGCGCGAACTTCATTTGTAATGTCGAGAATCAACCCGCTGGAA
AAATTGCACGCGTTTCATCGTGCATCTTTCGTACGAAAATCACCGGATCC
GTTTTGTGGTGACCCTTCGGAAGTAAAAAAGCCCATTCGTGTACCCACCG
AACGATATCAACCATGCCGCCGACCCTGCTTTTCCCCCCTCCCCTGGCCA
GGGCGATGACAAGTTTATTTTCGTGGGGAAAGCCGCCTGGTCTTCAGGCA
TCACCGCGGAACAGGCGTTACAGGTAACTCTGGCCTCCAGGTTCCACAAT
TCCAAGTGTACTTTAGCTCCAGCAGAACATGGAAAAGAGATGATATCTAC
ACATCTTCTTGTTTTTGCCATCTGTGGCAAATGCTCTTTGCTGGAGATCA
TCCATCTGACGGCAGCAGATGTGGGGCCTCTTTTCGAGCAAGTCGAGTTT
CTAGTCCTTCTGTGCTTGTGTGTATTTCCCTCTCGGGGACAGAAAGAATT
ACGTTTTGTCGAATTCAGCGGGCAATCCCCTCTCCGTTCGTTGAGAGACG
TAACGATACACACAGCAGGCTCCACTCTGCCTCGAGCTCGGTTTTATCTT
CATCAGTAGGTGGAGCGATCGATATGTGGGTAAAACTTGGCTGATTCTGT
CATAGTCGACGAGGCTTTCAGTTGCGAATTTGAACGTCGCAAGCCTGACT
TTCACTGCGGAAAAGCATGCGTTCCCACACAAACACGTCAGAGAGCGCGG
GCGCGACTTGTCGACTTCTAGCTCTCTTCTATACCGCCGACGCCATAGCA
GTAGTGTCCGGGGGGACACTCGCGCTCTCTAGGCTTCTCGCGCAAGCGCG
AAAGCCTTTTTTTCCGGGAGCTTCGGGAATGAGGCTGAATGGTGTGGCGA
CGAGGATCTCGAAAGAATGAGCGGGGGGTTCACACACACTGACTCTCGCT
CAAGACCCACCAACACACACACCTGGTTATTGTCAGGTCGAACGCGACTT
CGTGCCGACAGGTAACTAGCTTCCGAATCCCCATCTCTGACTCTCTTTCG
AGGTAGAAGTATACAGCGGAGTAGTGGATGGTATCGATCTGCGGGGGAGC
GCACAGGGGTCAACTATGCGGTCGGGAAACGGGCTGGTTGGTACACGCAA
TGGTATTTCATGGTGCCCGGGATGCCAGCGACCACGGCTAGGCTTGGATC
GAGTCCGTTTACGTGTGCACAGCTCTCAAAAAGGAAGCATCGACCCGCTG
CCCCGTTCGAGATACTATTACGACGAAGTGGAAGCTGCACTCAATGCACA
CGGCCTGCTTGTTTCATGGCAGCTCATCGCCCCTTCCCCCCATCTCACGA
GCGCCCTCCCCCCTCACCGTGACATGTACCACACGATGACGGAACGTCTG
AAGTTTCAACGAGGGCTCATCCTCGGCCACGTGGAACTCCTGGAACCGCT
ATGGAAGGAAAAGCCCGCCCCGATGCGCATCTTCACCGCGCCGATAAATT
CCGAGGTCGAGGTCGCGAGAAACGTGCACGATCTCGTGAGAGTGCTGGGC
CCTGGCAAAGGCAAGGATGTCAAGGTGCGTTGTCGGCATTGCGTTGCTAC
TTCGGCAATCCTGGGAGATCACTCTCGCATGTGGTGGCCCGTTTCCTTGC
CGCCTGCCTCACCCTCGTGCTACCATCAAGGCGCTTGGAGGACGACAGAT
CGTTGGAAACGACCTATTATCCACAACAATTTGTGTCTCCAGCATAAGTG
GGCATCATGACACCGTACGGGGGTACTCGGTAGTGCTGTCCCCGGGACGT
CGAAGCTTTGGTGCGGTTGAGACTCACAGCTGCACTGGCACGCACATCGA
ACTTCAACACAGGAGCATTTCTCTCGCACACGTGGCTCAATACTTACCGC
TGAATTATCGAGAGGGACGGAGCAGTACAAAACTTGCCGGATCCTGGGAG
TCTTTTTGCCTGAATGTTGGTGGCGTCGGCAGTATTTTTGGTCTTCAAGT
TCATGCGGCAGTCAACGGTCCCGGATGCGCCCCGCCAACCTGCCTTTTGT
ACTTGTAAATAAAGGTGGACCACTTGACCCCGCAAGAGGTTGGACTCAAG
CCGGAGCTGTACGAGCTCGGGGAGGAGTACTACTACGTTAGGAAGCTCCC
CGACGGCAAGAGCCCCGCACCTCCCGCGGAGGTGATGATCGAGAGCATGG
AGAACATGGTCACGAAGGGATTGATGCCTGAGAAGGACGCCGCAGCAACA
GAGGCGGCGGCAGCGGCCACTCCCCCAGCGGCGGAATAGGTTGAACCAGG
ATTTAGAGGAGGAGGGAGATTACGGCTGCGCGTCGGCTCGGTCGATGTGC
TCAAAGTGTGGCCGACGTCGAAAGTGCGGCGCCTGCCCAGGGAGGCCAGA
TGCTGCAGCTTATTGGCATCAGAGGCGGCGGTACCACCCTTTTGGCGGCC
AAAGGGGTATTGAATAAGACCGATCCCGCGCAATCTTGACTGATGCGCAC
AATTTCCATTTTTGTGTGGTCAGCTCGCTAAGTACGTTTGGATCAAAGCA
AAGTAAGACTGTCATGTAATCAGGCAGTGAACTTTCTCTGCATCCCGCCT
TCCGTGTCTCCGTGTGACTGCCGGGGATCCCCCCTTACGCTGGCTCCGTA
TTTGTGCGTGCTGCTTTGCCCGCAAAACTGGCACAGCAATGGTACTCAAT
CGGTGCTTGAGATTCTTTCGGACCGACGGTTGCTTGCACGGTAAACGAAA
CGCCAAATTTTCGGTCCAGAAATTTGCTAAGAATTGACACAGTAAATATT
TGACTGGACCACGGTTGGACTGTTAAACCGGTTTTGCAATGCTACAAAAA
CGTGTGTAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig72:23642..27300-

>mRNA_P-fluviatile_contig72.13846.1 ID=mRNA_P-fluviatile_contig72.13846.1|Name=mRNA_P-fluviatile_contig72.13846.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1566bp|location=Sequence derived from alignment at P-fluviatile_contig72:23642..27300- (Porterinema fluviatile SAG_2381)
ATGAAGTTCTCAATGTTTCCTTACGTGACTGCAGCGGTTGGATTCCTCTG
CGGCGCAGAAAGCTTTGTGGTGACGTCGATGCCGGCCATGCAGCGGCGAT
ATACTGAACCAACCCGGACGCAGTCGCACATGATCCGCTCCTATCCTAGC
AGCAGCGGTTGCGTGGTGATGATGGGCGGATTTGGCGAGCCGGTGAAAAA
GAAGAGTTCCAAGGGCGTAGGGAGGGGGCAAGAGGCTTATCAACGTCAGA
TGAAGTCTTACCACGGACTCATAAAGGCTGGCGCTGAAGGATGTGATGTG
TACGTTCATCGTGAGATGAAGTTCTCAATGTTTCCTTACGTGACTGCAGC
GGTTGGATTCCTCTGCGGCGCAGAAAGCTTTGTGGTGACGTCGATGCCGG
CCATGCAGCGGCGATATACTGAACCAACCCGGACGCAGTCGCACATGATC
CGCTCCTATCCTAGCAGCAGCGGTTGCGTGGTGATGATGGGCGGATTTGG
CGAGCCGGTGAAAAAGAAGAGTTCCAAGGGCGTAGGGAGGGGGCAAGAGG
CTTATCAACGTCAGATGAAGTCTTACCACGGACTCATAAAGGCTGGCGCT
GAAGGATGTGATGTGTACGTTCATCGTGAGGGCGATGACAAGTTTATTTT
CGTGGGGAAAGCCGCCTGGTCTTCAGGCATCACCGCGGAACAGGCGTTAC
AGGGCGATGACAAGTTTATTTTCGTGGGGAAAGCCGCCTGGTCTTCAGGC
ATCACCGCGGAACAGGCGTTACAGTTTCAACGAGGGCTCATCCTCGGCCA
CGTGGAACTCCTGGAACCGCTATGGAAGGAAAAGCCCGCCCCGATGCGCA
TCTTCACCGCGCCGATAAATTCCGAGGTCGAGGTCGCGAGAAACGTGCAC
GATCTCGTGAGAGTGCTGGGCCCTGGCAAAGGCAAGGATGTCAAGTTTCA
ACGAGGGCTCATCCTCGGCCACGTGGAACTCCTGGAACCGCTATGGAAGG
AAAAGCCCGCCCCGATGCGCATCTTCACCGCGCCGATAAATTCCGAGGTC
GAGGTCGCGAGAAACGTGCACGATCTCGTGAGAGTGCTGGGCCCTGGCAA
AGGCAAGGATGTCAAGGTGGACCACTTGACCCCGCAAGAGGTTGGACTCA
AGCCGGAGCTGTACGAGCTCGGGGAGGAGTACTACTACGTTAGGAAGCTC
CCCGACGGCAAGAGCCCCGCACCTCCCGCGGAGGTGATGATCGAGAGCAT
GGAGAACATGGTCACGAAGGGATTGATGCCTGAGAAGGACGCCGCAGCAA
CAGAGGCGGCGGCAGCGGCCACTCCCCCAGCGGCGGAATAGGTGGACCAC
TTGACCCCGCAAGAGGTTGGACTCAAGCCGGAGCTGTACGAGCTCGGGGA
GGAGTACTACTACGTTAGGAAGCTCCCCGACGGCAAGAGCCCCGCACCTC
CCGCGGAGGTGATGATCGAGAGCATGGAGAACATGGTCACGAAGGGATTG
ATGCCTGAGAAGGACGCCGCAGCAACAGAGGCGGCGGCAGCGGCCACTCC
CCCAGCGGCGGAATAG
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