mRNA_P-fluviatile_contig71.13832.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig71.13832.1
Unique NamemRNA_P-fluviatile_contig71.13832.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig71.13832.1 vs. uniprot
Match: D8LRF1_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF1_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 6.560e-21
Identity = 48/64 (75.00%), Postives = 53/64 (82.81%), Query Frame = -2
Query:    3 MLITQWVGAAMEILDNRKENRFRLFEKCGMAMAVDSSGNDRINLEGLDTPCTCMSEEDSSDDEG 194
            +LITQWVGAAME LD+R+E RFRLFEKCGMAM VD SG+DRI LEGLD P T   + DSSDDEG
Sbjct:  528 VLITQWVGAAMEELDSREEYRFRLFEKCGMAMTVDGSGDDRITLEGLDKPYTFAGDGDSSDDEG 591          
BLAST of mRNA_P-fluviatile_contig71.13832.1 vs. uniprot
Match: A0A6H5JS09_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS09_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.300e-18
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = -2
Query:    3 MLITQWVGAAMEILDNRKENRFRLFEKCGMAMAVDSSGNDRINLEGLDTPCTCMSEEDSSDDEG 194
            +LITQWVGAAME LD+R+E  FRLFEKCG+AM V  SG+DRI LEGLD P T   + DSSDDEG
Sbjct:  324 VLITQWVGAAMEELDSREEYLFRLFEKCGLAMTVGGSGDDRITLEGLDKPYTFAGDGDSSDDEG 387          
BLAST of mRNA_P-fluviatile_contig71.13832.1 vs. uniprot
Match: A0A6H5JTC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC1_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.750e-18
Identity = 41/63 (65.08%), Postives = 53/63 (84.13%), Query Frame = -2
Query:    6 MLITQWVGAAMEILDNRKENRFRLFEKCGMAMAVDSSGNDRINLEGLDTPCTCMSEEDSSDDE 194
            +LIT+W+GAAM  L++++  R+RLFEKCGMAM VD SG+DRI L+GLD PCT  ++EDSSDDE
Sbjct:   77 VLITRWMGAAMARLNSQQAYRYRLFEKCGMAMTVDGSGDDRITLKGLDKPCTFANDEDSSDDE 139          
BLAST of mRNA_P-fluviatile_contig71.13832.1 vs. uniprot
Match: A0A6H5JEK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK5_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.860e-18
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = -2
Query:    3 MLITQWVGAAMEILDNRKENRFRLFEKCGMAMAVDSSGNDRINLEGLDTPCTCMSEEDSSDDEG 194
            +LIT+W+GAAM  L++++  RFRLFEKCGM M VD SG+DRI LEGLD P T  ++ED S+DEG
Sbjct:   26 VLITRWIGAAMARLNSQQAFRFRLFEKCGMGMTVDGSGDDRITLEGLDKPYTFANDEDCSEDEG 89          
BLAST of mRNA_P-fluviatile_contig71.13832.1 vs. uniprot
Match: A0A6H5KLU8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU8_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 3.080e-18
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = -2
Query:    6 MLITQWVGAAMEILDNRKENRFRLFEKCGMAMAVDSSGNDRINLEGLDTPCTCMSEEDSSDDE 194
            +LITQW+GAAM  LD+++  R+RLFEKCGMAM VD SG+DRI LEGLD P T  ++EDSSDDE
Sbjct:   83 VLITQWMGAAMARLDSQQAYRYRLFEKCGMAMTVDGSGDDRITLEGLDKPYTFANDEDSSDDE 145          
BLAST of mRNA_P-fluviatile_contig71.13832.1 vs. uniprot
Match: A0A6H5K7D5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7D5_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 5.480e-18
Identity = 41/63 (65.08%), Postives = 52/63 (82.54%), Query Frame = -2
Query:    6 MLITQWVGAAMEILDNRKENRFRLFEKCGMAMAVDSSGNDRINLEGLDTPCTCMSEEDSSDDE 194
            +LITQW+GAAM  L++++  R+RLFEKCGMAM VD SG+DR+ LEGLD P T + +EDSSDDE
Sbjct:  158 VLITQWMGAAMARLNSQQAYRYRLFEKCGMAMTVDGSGDDRMTLEGLDKPYTFVYDEDSSDDE 220          
BLAST of mRNA_P-fluviatile_contig71.13832.1 vs. uniprot
Match: A0A6H5JXH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH0_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.320e-18
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = -2
Query:    3 MLITQWVGAAMEILDNRKENRFRLFEKCGMAMAVDSSGNDRINLEGLDTPCTCMSEEDSSDDEG 194
            +LITQWVGAAME L++R+E RF LFEKCGMA  VD SG+ RI LEGLD P T   + DSSDDEG
Sbjct:  408 VLITQWVGAAMEELNSREEYRFHLFEKCGMAKTVDGSGDGRITLEGLDKPYTFAGDGDSSDDEG 471          
BLAST of mRNA_P-fluviatile_contig71.13832.1 vs. uniprot
Match: A0A6H5JBK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBK8_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.010e-17
Identity = 40/64 (62.50%), Postives = 52/64 (81.25%), Query Frame = -2
Query:    6 LMLITQWVGAAMEILDNRKENRFRLFEKCGMAMAVDSSGNDRINLEGLDTPCTCMSEEDSSDDE 197
            +++ITQW+GAAM  L++++  R+RLFEKCGMAM VD SG+DRI LEGLD P T  ++ED SDDE
Sbjct:   55 VLIITQWMGAAMARLNSQQAYRYRLFEKCGMAMTVDGSGDDRITLEGLDKPYTFANDEDGSDDE 118          
BLAST of mRNA_P-fluviatile_contig71.13832.1 vs. uniprot
Match: A0A6H5KL79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL79_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.200e-17
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = -2
Query:    6 MLITQWVGAAMEILDNRKENRFRLFEKCGMAMAVDSSGNDRINLEGLDTPCTCMSEEDSSDDE 194
            +LITQW+GAAM  L+ ++  R+R+FEKCGMAM VD SG+DRI LEGLD P T  ++EDSS D+
Sbjct:   75 VLITQWMGAAMARLNRQQTYRYRIFEKCGMAMTVDGSGDDRITLEGLDKPYTFANDEDSSSDD 137          
BLAST of mRNA_P-fluviatile_contig71.13832.1 vs. uniprot
Match: A0A6H5K7A3_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7A3_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.560e-17
Identity = 42/63 (66.67%), Postives = 52/63 (82.54%), Query Frame = -2
Query:    6 MLITQWVGAAMEILDNRKENRFRLFEKCGMAMAVDSSGNDRINLEGLDTPCTCMSEEDSSDDE 194
            +LITQW+GAAM  L++++  R+RLFEKCGMAM VD SG+DRI LEGLD P T  ++EDSSDDE
Sbjct:  526 VLITQWMGAAMARLNSQQAYRYRLFEKCGMAMTVDGSGDDRITLEGLDKPYTFANDEDSSDDE 588          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig71.13832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRF1_ECTSI6.560e-2175.00C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JS09_9PHAE1.300e-1870.31DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JTC1_9PHAE1.750e-1865.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEK5_9PHAE2.860e-1862.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLU8_9PHAE3.080e-1868.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K7D5_9PHAE5.480e-1865.08DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JXH0_9PHAE8.320e-1868.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBK8_9PHAE1.010e-1762.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL79_9PHAE1.200e-1761.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7A3_9PHAE1.560e-1766.67HTH CENPB-type domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig71contigP-fluviatile_contig71:644086..644445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817155.5608175-CDS-P-fluviatile_contig71:644085..6444451622817155.5608175-CDS-P-fluviatile_contig71:644085..644445Porterinema fluviatile SAG_2381CDSP-fluviatile_contig71 644086..644445 +
1693571301.56278-CDS-P-fluviatile_contig71:644085..6444451693571301.56278-CDS-P-fluviatile_contig71:644085..644445Porterinema fluviatile SAG_2381CDSP-fluviatile_contig71 644086..644445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig71.13832.1prot_P-fluviatile_contig71.13832.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig71 644086..644445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig71.13832.1

>prot_P-fluviatile_contig71.13832.1 ID=prot_P-fluviatile_contig71.13832.1|Name=mRNA_P-fluviatile_contig71.13832.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=120bp
APSSSLESSSLMQVHGVSKPSKLIRSLPELSTAIAMPHFSKRRNRFSLRL
SRISMAAPTHCVISIRHGMCLKITTKTVGSDQRIHFTKAAWNHDFMYTSK
SAQAIRWCRLPCICLHVQA*
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mRNA from alignment at P-fluviatile_contig71:644086..644445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig71.13832.1 ID=mRNA_P-fluviatile_contig71.13832.1|Name=mRNA_P-fluviatile_contig71.13832.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=360bp|location=Sequence derived from alignment at P-fluviatile_contig71:644086..644445+ (Porterinema fluviatile SAG_2381)
GCCCCCTCGTCGTCGCTGGAGTCCTCCTCGCTCATGCAGGTGCACGGTGT GTCCAAACCCTCCAAGTTGATTCGGTCGTTGCCTGAACTGTCGACAGCCA TCGCCATGCCACACTTTTCGAAAAGGCGAAATCGGTTCTCCTTGCGGTTG TCGAGAATTTCCATGGCAGCCCCAACCCATTGCGTGATCAGCATAAGGCA CGGCATGTGCTTAAAAATCACGACGAAAACTGTGGGATCCGACCAACGCA TCCACTTTACGAAAGCCGCCTGGAACCATGACTTCATGTATACTTCGAAG TCTGCACAGGCAATACGGTGGTGCCGGCTGCCTTGTATTTGCTTGCACGT TCAAGCATGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig71:644086..644445+

>mRNA_P-fluviatile_contig71.13832.1 ID=mRNA_P-fluviatile_contig71.13832.1|Name=mRNA_P-fluviatile_contig71.13832.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=720bp|location=Sequence derived from alignment at P-fluviatile_contig71:644086..644445+ (Porterinema fluviatile SAG_2381)
GCCCCCTCGTCGTCGCTGGAGTCCTCCTCGCTCATGCAGGTGCACGGTGT
GTCCAAACCCTCCAAGTTGATTCGGTCGTTGCCTGAACTGTCGACAGCCA
TCGCCATGCCACACTTTTCGAAAAGGCGAAATCGGTTCTCCTTGCGGTTG
TCGAGAATTTCCATGGCAGCCCCAACCCATTGCGTGATCAGCATAAGGCA
CGGCATGTGCTTAAAAATCACGACGAAAACTGTGGGATCCGACCAACGCA
TCCACTTTACGAAAGCCGCCTGGAACCATGACTTCATGTATACTTCGAAG
TCTGCACAGGCAATACGGTGGTGCCGGCTGCCTTGTATTTGCTTGCACGT
TCAAGCATGAGCCCCCTCGTCGTCGCTGGAGTCCTCCTCGCTCATGCAGG
TGCACGGTGTGTCCAAACCCTCCAAGTTGATTCGGTCGTTGCCTGAACTG
TCGACAGCCATCGCCATGCCACACTTTTCGAAAAGGCGAAATCGGTTCTC
CTTGCGGTTGTCGAGAATTTCCATGGCAGCCCCAACCCATTGCGTGATCA
GCATAAGGCACGGCATGTGCTTAAAAATCACGACGAAAACTGTGGGATCC
GACCAACGCATCCACTTTACGAAAGCCGCCTGGAACCATGACTTCATGTA
TACTTCGAAGTCTGCACAGGCAATACGGTGGTGCCGGCTGCCTTGTATTT
GCTTGCACGTTCAAGCATGA
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