mRNA_P-fluviatile_contig7.13707.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13707.1
Unique NamemRNA_P-fluviatile_contig7.13707.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:3837195..3839558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size504
Cds size387
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13707.1prot_P-fluviatile_contig7.13707.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 3839172..3839558 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817111.9652808-UTR-P-fluviatile_contig7:3837194..38372741622817111.9652808-UTR-P-fluviatile_contig7:3837194..3837274Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 3837195..3837274 +
1693571164.6806247-UTR-P-fluviatile_contig7:3837194..38372741693571164.6806247-UTR-P-fluviatile_contig7:3837194..3837274Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 3837195..3837274 +
1622817111.9759831-UTR-P-fluviatile_contig7:3839134..38391711622817111.9759831-UTR-P-fluviatile_contig7:3839134..3839171Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 3839135..3839171 +
1693571164.6968036-UTR-P-fluviatile_contig7:3839134..38391711693571164.6968036-UTR-P-fluviatile_contig7:3839134..3839171Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 3839135..3839171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817111.989298-CDS-P-fluviatile_contig7:3839171..38395581622817111.989298-CDS-P-fluviatile_contig7:3839171..3839558Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3839172..3839558 +
1693571164.7079024-CDS-P-fluviatile_contig7:3839171..38395581693571164.7079024-CDS-P-fluviatile_contig7:3839171..3839558Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3839172..3839558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13707.1

>prot_P-fluviatile_contig7.13707.1 ID=prot_P-fluviatile_contig7.13707.1|Name=mRNA_P-fluviatile_contig7.13707.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=129bp
MNSSGSTGAAAAAASAGAAPATVAPAEAPTPAAGAATAPVAVAAAAPPPA
AASSASASAVSSAAAAPAAPAAAPAAAAAAIPADLTRNSAATVAIVPAVV
NTTSAINGGVTPITSLGGGGGTSKAIATP
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mRNA from alignment at P-fluviatile_contig7:3837195..3839558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13707.1 ID=mRNA_P-fluviatile_contig7.13707.1|Name=mRNA_P-fluviatile_contig7.13707.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2364bp|location=Sequence derived from alignment at P-fluviatile_contig7:3837195..3839558+ (Porterinema fluviatile SAG_2381)
CTGTCGCATGCTCCAGTCGAACGAGTTAGACAGGGAATAAGGGAAGGAGA
AATACGCGTGGATAAACAAGCAAGGCTCAGGTGAGGGATGATCACCGTTT
TTGACGTCGTCAGCGTCTTTCAATGCTTGAAGCCGGCCGTGTTCAACAAC
CTCAGAGTGCGCCTCAGATCGCCCACCGCCTCTCTCTTTCTGCTCTCTCT
TCACACACAAACCACTGCCCCTGTGGCCTGTCCGAAGCATCGTACTGTGT
GGTTTGTTGGTCTTGAAGGATAAAGTTTTGTCCGAAACGGCTCCGTATGC
AAAGATAAATGTTGCGGAGAGAGAGCGAGCCCGCAAGCGCGATGACATCA
CACCGGTCTCGTCCAACCCTGAACATCGATGTTGTCCCTTCCGAACAGGG
ACAGGCGCATGCGTGACAAGATAGAATCGGTGTGGTGGGCTCCAGTTTAT
TCGGTGCGCGAGCACGCGCAAAGCTCAGGCCTAGAGCAGTCAGTCACGCG
CAAAATAGAGGCTGTTACGGTAGTCGCCACGCAAAGCAGACACACAAATC
GCTTTGAACACCTGGGATGTTCAGAGAGCAGGGGGAAAGAGGGGAGGGCC
GAGAGAACGACAGGCCGTTCCAACTTAATAATCAGACCTAGCGTGCTGCC
AGCACACGAGTAGAATCAGATCCACTCGCCTCGACTCAGCTGCGCCTCCA
TGCAGTTGCTCAGCGACCAATGCTCCAACGTCGACAGCAGTAGCGCAAGT
CGGTATCCCGATTTGTGCATATCGGCCCGGCTTGACCGATCATGGGCCAA
CGAGAGGGGACCGCGCGCGAAATTTTTTGAATCGAAAATACGGAGTACTT
CTGCTCTACTCCGAAAACTACTCGCTGATCGGCGTGTCATGTTTGCACGC
TGCTGCAGCTCCGTGCCCTACGTGTCGCCCATTTGAATTTAGCGCGGCCC
ACGAATTTGTGGTTCGAAGGATAGAAATGCACAGATCCCTGCCTCGAACG
CGAACCACAGGCGCCTTCTTTTTTTGTTCGGCGAGGATGGCGTCGATCCC
TACCATCTCGAGAGAACCCCCCCCCCGTACTACTAGGGAGGTCGACGTGC
TTCCCCGGGAACAAATTTATGTGGCGTTGGGTGTTTGAAAATATAAGGTG
TCTGTTAACTTGAGATCGCCTTACCCACTGGGCAAAGGCTGCGGTCGATG
TACAGGCGCTGCCTTTCATGCCTCTACTGTTGAAGTTGGCAAGGTGTCCT
TCAAAGAGATTCAGGTCCACTGATGGCTGAACCGTGCAACGCTGCCCGCT
GTTGCCATGTAAGATGGACGGCGGCATGAAAACACTTCCCCCCCCCCCGC
GCCGATTGAGATGCGCTTCCTTCGATTCCAATCTATATTTAATATGAAAT
ATCCCTCCCCTGCCAACACAAAAATCAACCGCCTACCGCGTGCGCTTAAG
GATGGAACGGATGGCCTCGAGTGTCGGCATACGGGTGACTGGCCATCGCA
AAGTTCAGAAACACTTTTCATTCAGGGAACAGACGAGGGTGTGCAATGGC
TGTGCAATGCCTCGTATTGCAGAGGCCGCCCCACGCTCCCTCTAAAATGA
TAAATTGAGCCGTTGACTTCCCTTGCGACTCACCGTTGCGCCCAGCGCGA
CATGCCCATTTTTCGTGGAAAGTGCGGGCGACGTTAACGACGTATCCACC
CCGTGCTTGCGTCGTTTTCAAGAGGTCACACGCACACATTGCAATCAAGC
ACGTCCTGCCCGCCCCCCCGTCTCTGCTGGACATGTTTAGTGCTCCCGCG
GTAATATATCTGTTTTGGGCGCTCCGTGTGAGACATGTTCGCGTGTTCGG
ACGGCTACATGGAAAAAACTCCCGCCCCCTTCCCCCTCGAATTTTTTCCC
CATGCCCGTGGTTCCCCCCATGTCTTTGATGCCTGTGAAGACCTGCGGCA
GAGTCAGGGTTAGGGTTGGGGTAGGGGATGAACTCCAGCGGCAGCACCGG
TGCCGCAGCTGCAGCGGCATCAGCAGGGGCAGCACCAGCAACAGTAGCGC
CAGCAGAAGCACCAACGCCAGCGGCAGGGGCAGCAACAGCACCGGTGGCT
GTCGCAGCAGCAGCACCTCCACCTGCGGCCGCCTCATCAGCATCAGCATC
GGCTGTCTCATCAGCAGCAGCAGCACCAGCGGCGCCAGCGGCGGCACCGG
CAGCGGCAGCGGCTGCTATACCGGCCGACCTCACGAGGAATAGCGCAGCA
ACAGTAGCAATTGTACCGGCAGTAGTAAATACGACAAGCGCTATCAATGG
CGGAGTTACCCCCATCACGAGCCTGGGAGGCGGCGGCGGAACCTCGAAAG
CGATTGCAACCCCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:3837195..3839558+

>mRNA_P-fluviatile_contig7.13707.1 ID=mRNA_P-fluviatile_contig7.13707.1|Name=mRNA_P-fluviatile_contig7.13707.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=774bp|location=Sequence derived from alignment at P-fluviatile_contig7:3837195..3839558+ (Porterinema fluviatile SAG_2381)
ATGAACTCCAGCGGCAGCACCGGTGCCGCAGCTGCAGCGGCATCAGCAGG
GGCAGCACCAGCAACAGTAGCGCCAGCAGAAGCACCAACGCCAGCGGCAG
GGGCAGCAACAGCACCGGTGGCTGTCGCAGCAGCAGCACCTCCACCTGCG
GCCGCCTCATCAGCATCAGCATCGGCTGTCTCATCAGCAGCAGCAGCACC
AGCGGCGCCAGCGGCGGCACCGGCAGCGGCAGCGGCTGCTATACCGGCCG
ACCTCACGAGGAATAGCGCAGCAACAGTAGCAATTGTACCGGCAGTAGTA
AATACGACAAGCGCTATCAATGGCGGAGTTACCCCCATCACGAGCCTGGG
AGGCGGCGGCGGAACCTCGAAAGCGATTGCAACCCCAATGAACTCCAGCG
GCAGCACCGGTGCCGCAGCTGCAGCGGCATCAGCAGGGGCAGCACCAGCA
ACAGTAGCGCCAGCAGAAGCACCAACGCCAGCGGCAGGGGCAGCAACAGC
ACCGGTGGCTGTCGCAGCAGCAGCACCTCCACCTGCGGCCGCCTCATCAG
CATCAGCATCGGCTGTCTCATCAGCAGCAGCAGCACCAGCGGCGCCAGCG
GCGGCACCGGCAGCGGCAGCGGCTGCTATACCGGCCGACCTCACGAGGAA
TAGCGCAGCAACAGTAGCAATTGTACCGGCAGTAGTAAATACGACAAGCG
CTATCAATGGCGGAGTTACCCCCATCACGAGCCTGGGAGGCGGCGGCGGA
ACCTCGAAAGCGATTGCAACCCCA
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