mRNA_P-fluviatile_contig7.13683.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13683.1
Unique NamemRNA_P-fluviatile_contig7.13683.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:3409362..3410041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size680
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13683.1prot_P-fluviatile_contig7.13683.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 3409415..3409759 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817111.8885796-UTR-P-fluviatile_contig7:3409361..34094141622817111.8885796-UTR-P-fluviatile_contig7:3409361..3409414Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 3409362..3409414 +
1693571164.6286952-UTR-P-fluviatile_contig7:3409361..34094141693571164.6286952-UTR-P-fluviatile_contig7:3409361..3409414Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 3409362..3409414 +
1622817111.9078693-UTR-P-fluviatile_contig7:3409759..34100411622817111.9078693-UTR-P-fluviatile_contig7:3409759..3410041Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 3409760..3410041 +
1693571164.6502428-UTR-P-fluviatile_contig7:3409759..34100411693571164.6502428-UTR-P-fluviatile_contig7:3409759..3410041Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 3409760..3410041 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817111.898661-CDS-P-fluviatile_contig7:3409414..34097591622817111.898661-CDS-P-fluviatile_contig7:3409414..3409759Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3409415..3409759 +
1693571164.637379-CDS-P-fluviatile_contig7:3409414..34097591693571164.637379-CDS-P-fluviatile_contig7:3409414..3409759Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3409415..3409759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13683.1

>prot_P-fluviatile_contig7.13683.1 ID=prot_P-fluviatile_contig7.13683.1|Name=mRNA_P-fluviatile_contig7.13683.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=115bp
MSRLLKEQRGSFVYVTDIGHLNGVEACGFENQRARGGAFCVTHGKASGRK
RLSHGRSANGLSVVTAPRKRRRGSRAVRSMSPCRLLRTQARRAAEGGDIV
VGSLLNLLECDESR*
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mRNA from alignment at P-fluviatile_contig7:3409362..3410041+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13683.1 ID=mRNA_P-fluviatile_contig7.13683.1|Name=mRNA_P-fluviatile_contig7.13683.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=680bp|location=Sequence derived from alignment at P-fluviatile_contig7:3409362..3410041+ (Porterinema fluviatile SAG_2381)
GCCTCGGGGAAGGGGTTGCACCAATCATTTTCAAGTTCGAAGCTGTTAAA
AGTATGTCTCGTTTGTTGAAAGAACAAAGAGGGTCGTTCGTGTATGTTAC
AGATATCGGCCACCTCAATGGGGTGGAGGCGTGCGGCTTTGAGAATCAAC
GAGCGAGGGGCGGGGCGTTTTGTGTCACGCACGGCAAAGCGAGCGGACGC
AAGAGACTCAGTCACGGCCGCAGCGCGAACGGGCTCTCTGTAGTTACAGC
ACCTCGGAAAAGGCGACGCGGAAGTCGTGCCGTCAGATCGATGTCGCCTT
GTCGTTTGCTGCGTACGCAAGCGAGGAGAGCTGCGGAGGGAGGAGACATT
GTCGTGGGATCGCTGCTGAACCTTCTAGAATGCGATGAGAGCAGATAAAA
CGAAGCAATGATGACGAAGGCCCACCGCGTTCGCCTTTGCTTCCCTCCCT
CGGTGTCCATTTCTTCGCTGTTGATCTTGATCCATTACCCGTGCTGGTAA
GAAGAGTGCACCATCGGCATCGTCCAAACAAATGCTTCGATTCCTATGAT
TTCCAGCTCGACCACCGTCCCGGAATTTCCTCGTCCCGTGCACGACCGTG
CTATTCCGTGACATTCACCACTCCACATCTCCGCCCCGACTCCTGCTTTA
CCTTGGCGAGAGAGACGGCGTCGATGTCCT
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:3409362..3410041+

>mRNA_P-fluviatile_contig7.13683.1 ID=mRNA_P-fluviatile_contig7.13683.1|Name=mRNA_P-fluviatile_contig7.13683.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=690bp|location=Sequence derived from alignment at P-fluviatile_contig7:3409362..3410041+ (Porterinema fluviatile SAG_2381)
ATGTCTCGTTTGTTGAAAGAACAAAGAGGGTCGTTCGTGTATGTTACAGA
TATCGGCCACCTCAATGGGGTGGAGGCGTGCGGCTTTGAGAATCAACGAG
CGAGGGGCGGGGCGTTTTGTGTCACGCACGGCAAAGCGAGCGGACGCAAG
AGACTCAGTCACGGCCGCAGCGCGAACGGGCTCTCTGTAGTTACAGCACC
TCGGAAAAGGCGACGCGGAAGTCGTGCCGTCAGATCGATGTCGCCTTGTC
GTTTGCTGCGTACGCAAGCGAGGAGAGCTGCGGAGGGAGGAGACATTGTC
GTGGGATCGCTGCTGAACCTTCTAGAATGCGATGAGAGCAGATAAATGTC
TCGTTTGTTGAAAGAACAAAGAGGGTCGTTCGTGTATGTTACAGATATCG
GCCACCTCAATGGGGTGGAGGCGTGCGGCTTTGAGAATCAACGAGCGAGG
GGCGGGGCGTTTTGTGTCACGCACGGCAAAGCGAGCGGACGCAAGAGACT
CAGTCACGGCCGCAGCGCGAACGGGCTCTCTGTAGTTACAGCACCTCGGA
AAAGGCGACGCGGAAGTCGTGCCGTCAGATCGATGTCGCCTTGTCGTTTG
CTGCGTACGCAAGCGAGGAGAGCTGCGGAGGGAGGAGACATTGTCGTGGG
ATCGCTGCTGAACCTTCTAGAATGCGATGAGAGCAGATAA
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