mRNA_P-fluviatile_contig7.13672.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13672.1
Unique NamemRNA_P-fluviatile_contig7.13672.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:3330142..3332291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size166
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817110.2168937-CDS-P-fluviatile_contig7:3330141..33302251622817110.2168937-CDS-P-fluviatile_contig7:3330141..3330225Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3330142..3330225 +
1693571159.5923123-CDS-P-fluviatile_contig7:3330141..33302251693571159.5923123-CDS-P-fluviatile_contig7:3330141..3330225Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3330142..3330225 +
1622817110.2290692-CDS-P-fluviatile_contig7:3332209..33322901622817110.2290692-CDS-P-fluviatile_contig7:3332209..3332290Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3332210..3332290 +
1693571160.00487-CDS-P-fluviatile_contig7:3332209..33322901693571160.00487-CDS-P-fluviatile_contig7:3332209..3332290Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3332210..3332290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13672.1prot_P-fluviatile_contig7.13672.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 3330142..3332290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13672.1

>prot_P-fluviatile_contig7.13672.1 ID=prot_P-fluviatile_contig7.13672.1|Name=mRNA_P-fluviatile_contig7.13672.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=55bp
PGSRVSRAAQLLKIRKVCRCLGVLITPEPGDLLALRRDETHHIVPGGFLH
RQQAV
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mRNA from alignment at P-fluviatile_contig7:3330142..3332291+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13672.1 ID=mRNA_P-fluviatile_contig7.13672.1|Name=mRNA_P-fluviatile_contig7.13672.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2150bp|location=Sequence derived from alignment at P-fluviatile_contig7:3330142..3332291+ (Porterinema fluviatile SAG_2381)
CCGGGATCTCGAGTATCCCGGGCCGCACAGCTGCTGAAGATCAGGAAGGT
CTGCAGGTGTCTGGGGGTTTTGATAACCCCCGAGGTGAGCTGATTCCCAG
CGTTGTTGGGGATGGTGAGGAGGTTGGAGGGGGTGCTGTGTACAGCAGTA
GTGCTGTGAAGCAATTCCCCCGCTTTCAGACCCCCGTGTTCAAGGGAGAT
CGGAAGGACTGGTTGGCATCCCGTGCTGACGTTCTAAAGACCGCGGGAAT
TCTCGAGCTGAAGGGCCAGTTTGTTGGGCCGTCGGCTGTTCCTGACATTA
CGAAGGATATTCGATACACCCGTTGATATGCCCTTGTTTGTGCTTAGGCA
GCGAGTAAAGTTCGGTTTACTGAGTTCTTTAGCTCCCGTGGAAGAGGGGC
AGGAGAGAGTCACGCACCACGCTTCTCTGGAAAGCGATGCCCTGTGGCAA
TCTTCTCTGAAGACATCCCTCTTTCTACTGTACGAAATACGGAACCCCTG
CTCGGAAATCTCGAATCCAGCAATCACACGAACACCCTCCCCTGTTTGTC
ACTCCAGTGATGAACAACTCGTGTGACCCGCCAGAAAAACAAGAATGCCA
AAACACCAACTCAAACAAAATCATCTAAGGGGAAACCTAGCCTCTAGATC
AAAACCCCTTACTCAACACCTTCAGGTCATTCATATCACGATAGATTCCA
ATGGATGTTATTAATGTGGCAAGAACACATCATACCACCTCCCATATGCT
CAATCATTGTCCTGTTCATTGAAACTTGAAGCAACGCAGTACACACAAAT
CGTTTACACGCTCTCCACCCTTTTCGAGATGTGCAGCACACTTAACCAAA
AATAACCTCCAACAATAATCTGGGACTCACCCTGATACAAAACAGGCACA
TGACCCAGCATCCGCTCGTGACAATACAACCTACAGATCCTTCAAGAATC
CAAACTACAACGCCCTCCCCCAATCATTAGGCTTTGCGGTTTTCCTGGCA
GACTGTTTGGAATTTCTTCCAACTACCAGACACCCCTACGTGTGCCCGAA
CAAATTTGTCCCGACCTTGGCACCCTTACTTATGCTCGAACAACCAAACG
GTTCCAAGGTACTCTAGCGTCCCTGACTGTACGCCCGAGCAATCAGATTG
CTCCAAGTTTCTGTCTACTCATGACATGGAAGCGCCTTTCCTGCACTCCC
TCGATTTTAGTCAACACATGACATGGAAGCGCCTTTTCTGCACTACCCAG
ATTTTAGTCAACACATGACATGGAAGCGCCTTTTCTGCACTACCCCGATT
TTTAGTCAACACATGACATGGAAGCGCCTTTTCTGCACTACCCCGATTTT
TATCAATGATCGACGCAGGCAATATCATTCATCACCTACAGACGAAATGG
AAACGGCTTTCCCCGAATCCCCTCATGCGGCCCGGAATTGATCAACATCC
CGGCTCCACCTAGCGTCCCTAACTGTACGCCCGGAGCACACTGATTGCTC
CCACAAAAcATCATGATCGGTCGTCAGGTATATCACAAACAACCAACTCA
TGAACGGAAACGCATTTACCACGAATCCCTACAACTTCAATGTTTCATCT
GGTCGCAATCACGCACGTTCAACATTCTTAAACTAACCAGATAGAAAGAA
GCCTTGTTGAAACGCCTCCCTGGACGTTCCACATCTCAAAAAGCTTGATC
CTTCTCGGAGTCCGGTTCCTCGAATTGCTCGATCATGGCCACGTTCGCTT
CTTCCACCTTTTCTTCCTCAGATGAGCACTTGTCCGCCTTGTGTCCATAG
CCACCGCAGTTGCCACACTTCGGTAGCGGGTTGTTTGGGAACGGGCAGTC
TTCAGCGTAGTGCCCCTTCCGATGGCAGAGGAAGCATCGCCCCTTTTTCT
ACCAGGTCTCCCGCCGCCTCCATTGGCACCGCCACCATTTCCGCCACCAT
CGTTGCCGCCACCACGGCCACGGCCCTTCTTTTCGCTTCCTTTTCCCTTG
CTCACTGACGTCACGTAGGCCTGCTCCTGCCCCTTCCGCTGCGCTGCCAC
CTTTTCTTCGTCGCGCAGCCTGGTGATCTTCTCGCGTTGCGTCGTGACGA
GACGCACCACATCGTTCCTGGTGGGTTCCTTCATCGCCAGCAGGCTGTTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:3330142..3332291+

>mRNA_P-fluviatile_contig7.13672.1 ID=mRNA_P-fluviatile_contig7.13672.1|Name=mRNA_P-fluviatile_contig7.13672.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=330bp|location=Sequence derived from alignment at P-fluviatile_contig7:3330142..3332291+ (Porterinema fluviatile SAG_2381)
CCGGGATCTCGAGTATCCCGGGCCGCACAGCTGCTGAAGATCAGGAAGGT
CTGCAGGTGTCTGGGGGTTTTGATAACCCCCGAGCCGGGATCTCGAGTAT
CCCGGGCCGCACAGCTGCTGAAGATCAGGAAGGTCTGCAGGTGTCTGGGG
GTTTTGATAACCCCCGAGCCTGGTGATCTTCTCGCGTTGCGTCGTGACGA
GACGCACCACATCGTTCCTGGTGGGTTCCTTCATCGCCAGCAGGCTGTTC
CTGGTGATCTTCTCGCGTTGCGTCGTGACGAGACGCACCACATCGTTCCT
GGTGGGTTCCTTCATCGCCAGCAGGCTGTT
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