mRNA_P-fluviatile_contig7.13661.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13661.1
Unique NamemRNA_P-fluviatile_contig7.13661.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig7.13661.1 vs. uniprot
Match: D8LMD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMD9_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 1.660e-88
Identity = 128/177 (72.32%), Postives = 147/177 (83.05%), Query Frame = 1
Query:    1 ALDKYPVVTKSTSSGLIGLLGDVLAQSIGWVLWGGPPLWATPDALWRSCAVMLDGFFINGPLLHYAYEILEEYLPAEESLLAAVIQVGVDVFVIDPVFAFIFVWSTGLIEGRSVRHEILGTLEHDYPTMVLWLVVIGLCWAPLQIYLFNRYPVQFRVLTADLIDLVWTCVTSFFCHV 531
            ALD YPV+TKS SSG IGLLGDVLAQ + ++     P W T   +WRSCAVM+DG  INGPLLHYAYE+LE  +PA +S+LAA+ QV VDV VIDPVFAF+FVWSTGLIEGRSVR EIL T+ H YPT+VLWL+VIG+ WAP+QIYLFNRYPVQ+RVLTADLIDLVWTCV+S F HV
Sbjct:    9 ALDAYPVLTKSISSGFIGLLGDVLAQWVEYLFGAAFPPWKTTAMVWRSCAVMIDGLLINGPLLHYAYEMLESRMPAGDSILAAMTQVCVDVLVIDPVFAFMFVWSTGLIEGRSVRGEILPTIVHHYPTLVLWLIVIGVGWAPIQIYLFNRYPVQYRVLTADLIDLVWTCVSSLFSHV 185          
BLAST of mRNA_P-fluviatile_contig7.13661.1 vs. uniprot
Match: D8LMD8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD8_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 4.050e-54
Identity = 88/174 (50.57%), Postives = 124/174 (71.26%), Query Frame = 1
Query:    4 LDKYPVVTKSTSSGLIGLLGDVLAQSIGWVLWGGPP--LWATPDALWRSCAVMLDGFFINGPLLHYAYEILEEYLPAEESLLAAVIQVGVDVFVIDPVFAFIFVWSTGLIEGRSVRHEILGTLEHDYPTMVLWLVVIGLCWAPLQIYLFNRYPVQFRVLTADLIDLVWTCVTSF 519
            L+K P++ K  +S L+G LGDV++Q + W + GG    +W   +A+ +S AV +DGF ++ PLLH AY  L+ +LPAEES   A+ QV VDV V+DP+F  +F+ +TGL+EGRS   EI+ T+E DY T+V WLVVIGL  APLQ+Y FNR+PV++RVL +D +D++WT V  F
Sbjct:   89 LEKRPLIWKCATSALVGALGDVISQGVYWAIRGGRANAVWHDTNAVRQSLAVAIDGFCVSAPLLHLAYGALDRWLPAEESKAYALAQVLVDVLVLDPIFGLLFMVTTGLLEGRSFSQEIIRTIEDDYVTLVFWLVVIGLALAPLQVYTFNRFPVKWRVLISDGMDVLWTFVACF 262          
BLAST of mRNA_P-fluviatile_contig7.13661.1 vs. uniprot
Match: A0A6H5L428_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L428_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.100e-27
Identity = 54/69 (78.26%), Postives = 62/69 (89.86%), Query Frame = 1
Query:  256 QVGVDVFVIDPVFAFIFVWSTGLIEGRSVRHEILGTLEHDYPTMVLWLVVIGLCWAPLQIYLFNRYPVQ 462
            Q+GVDV VIDPVFAF+F+W TGLIEGRSV+ EIL T+ H YPT+VLWLVVIG+ WAP+QIYLFNRYPVQ
Sbjct:  650 QIGVDVLVIDPVFAFMFIWYTGLIEGRSVQGEILPTIVHHYPTLVLWLVVIGVGWAPVQIYLFNRYPVQ 718          
BLAST of mRNA_P-fluviatile_contig7.13661.1 vs. uniprot
Match: A0A7S3XMM5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMM5_HETAK)

HSP 1 Score: 106 bits (265), Expect = 1.680e-25
Identity = 66/181 (36.46%), Postives = 90/181 (49.72%), Query Frame = 1
Query:    4 LDKYPVVTKSTSSGLIGLLGDVLAQSIGWVLW---GGPPLWATPDAL--WRSCAVMLDGFFINGPLLHYAYEILEEYLPAEES-LLAAVIQVGVDVFVIDPVFAFIFVWSTGLIEGRSVRHEILGTLEHDYPTMVLWLVVIGLCWAPLQIYLFNRYPVQFRVLTADLIDLVWTCVTSFFCH 528
            L   P++TK+ S+  I   GD   Q   W  W       +      L   R  AVM+DG FI GP+LH AYE+LE  +P E    L AV+ V  D F++DP+F   F  +TGL E R +  + L  L  ++P  +     +     P+Q   F   PV++RVL  + IDL WT   SFF H
Sbjct:   28 LKNAPMLTKALSAAGIAASGDFATQI--WEHWRETSNQGILVDKFILDRRRQLAVMMDGIFITGPILHLAYELLEHLVPTEGGGALPAVLHVAADTFLLDPLFVCTFFLTTGLFERRPLWADTLPRLRREFPAALRGSWSVSAVCLPVQFASFRYVPVRYRVLLVNCIDLAWTATMSFFSH 206          
BLAST of mRNA_P-fluviatile_contig7.13661.1 vs. uniprot
Match: A0A7S3DNH3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DNH3_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.580e-21
Identity = 67/188 (35.64%), Postives = 98/188 (52.13%), Query Frame = 1
Query:    4 LDKYPVVTKSTSSGLIGLLGDVLAQSIGWVLWGGPPLWATP-----DALWRSCAVMLDGFFINGPLLHYAYEILEEYLPAEESLL-------AAVIQVGVDVFVIDPVFAFIFVWSTGLIEGRSVRHEILGTLEHDY-PTMVLWLVVIGLCWAPLQIYLFNRYPVQFRVLTADLIDLVWTCVTSFFCH 528
            L ++P+VTKS ++GL+G  GD +AQ +    W  PP          DA  R  ++++DG  ++GPL+H+AYE +E + P   +          A+  V  D  V+D +F    +W+TGL+EG SVR +       DY PT+    V   L   PL++  F   PV FRVL  + IDL+W  V S   H
Sbjct:  177 LQRHPLVTKSVTAGLLGWGGDSVAQRLEG--WKQPPQGRHSRQGRYDAR-RGGSLLVDGLLLSGPLMHFAYEWMETWWPIPSATAYWWQGWGIALTHVLADTLVLDSIFVASTLWTTGLLEGYSVR-QCWWQFRQDYIPTLKAGGVTSFLV-LPLELACFKCLPVSFRVLAVNFIDLIWDTVISHMAH 359          
BLAST of mRNA_P-fluviatile_contig7.13661.1 vs. uniprot
Match: A0A7S3LFT8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LFT8_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.860e-20
Identity = 65/181 (35.91%), Postives = 96/181 (53.04%), Query Frame = 1
Query:    4 LDKYPVVTKSTSSGLIGLLGDVLAQSIGWVLW----GGPPLWATPDALWRSCAVMLDGFFINGPLLHYAYEILEEYLPAEESLLAAVIQVGVDVFVIDPVFAFIFVWSTGLIEGRSVRHEILGTLEHDY-PTM-VLWLVVIGLCWAPLQIYLFNRYPVQFRVLTADLIDLVWTCVTSFFCH 528
            L   P+VTK  ++G+IG LGD LAQS+   L       P + +  D   R  + +L GFFI+GPL+H+AY++ +  LP   +  AA++ V  D   +D +F       TG +EG   R +++  L  DY PT+   W   I L   P++   F   P+ +RVL  + IDL+W  V SF  H
Sbjct:  183 LSVNPLVTKGITAGVIGSLGDFLAQSLENFLHQRKNNAPVVHSKYDPR-RGLSTLLYGFFISGPLMHFAYDLFDRVLPIHGNG-AALVHVLADSIFLDAIFVAATYIVTGRMEGYKFR-QVMPQLRKDYLPTLKASWATSIFLM--PVEFVCFRFLPLNYRVLAVNFIDLIWDGVISFMAH 358          
BLAST of mRNA_P-fluviatile_contig7.13661.1 vs. uniprot
Match: A0A2V3J3C5_9FLOR (Protein Mpv17 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3C5_9FLOR)

HSP 1 Score: 86.3 bits (212), Expect = 1.200e-17
Identity = 56/178 (31.46%), Postives = 94/178 (52.81%), Query Frame = 1
Query:    4 LDKYPVVTKSTSSGLIGLLGDVLAQSIGWVLWGGPPLWATPDALW--RSCAVMLDGFFINGPLLHYAYEILEEYLPAEESLLAAVIQVGVDVFVIDPVFAFIFVWSTGLIEGRSVRHEILGTLEHDY-PTMVLWLVVIGLCWAPLQIYLFNRYPVQFRVLTADLIDLVWTCVTSFFCH 528
            LDKYP+VTK  +SG++  + D++AQ +                +W  R+ A  +     + PLLH  YE+ E Y+PA  +L   + Q+ +D  V  PV+ F+F+    ++EGR    EI  TL   Y P++++ L++  +    +Q   F   P ++RVL  +++DLV+T + S   H
Sbjct:   47 LDKYPLVTKMLTSGVLVAISDLIAQLV-----------EARGYIWVQRTIAFSVAEIVFSAPLLHVLYELYERYIPAV-NLRNLLSQLVLDGVVAMPVWLFVFLVLVSILEGRWTLVEIWETLRTKYIPSLIVTLILTPV----VQSVNFTVVPPKYRVLVVNIVDLVYTTILSLLAH 208          
BLAST of mRNA_P-fluviatile_contig7.13661.1 vs. uniprot
Match: UPI0018AE4B44 (protein Mpv17-like isoform X2 n=2 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AE4B44)

HSP 1 Score: 84.3 bits (207), Expect = 2.060e-16
Identity = 55/176 (31.25%), Postives = 89/176 (50.57%), Query Frame = 1
Query:    1 ALDKYPVVTKSTSSGLIGLLGDVLAQSIGWVLWGGPPLWATPDALWRSCAVMLDGFFINGPLLHYAYEILEEYLPAEESLLAAVIQVGVDVFVIDPVFAFIFVWSTGLIEGRSVRHEILGTLEHDYPTMVLWLVVIGLCWAPLQIYLFNRYPVQFRVLTADLIDLVWTCVTSFFCH 528
            ALDK+PV+TKS +S L+ L+GD++ Q +           A+   L RS      GF + GP LH+ Y  L + +    S   A + + +D F+  P+F  +F+    ++EGR    +++  L+ ++P+ +   V     W P Q  +F   P QF+VL  D + L W  + SF  H
Sbjct:  115 ALDKHPVLTKSITSALLTLIGDLICQLM--------IEQASKLDLKRSLIFTTLGFVLVGPTLHFWYLSLSKLVTTTGSS-GAFVCLLLDQFLFSPIFIGVFLSLVVILEGRP--SQVVPKLKQEWPSSM---VANWQLWIPFQFLIFRFVPQQFQVLATDFVALAWNAILSFKAH 276          
BLAST of mRNA_P-fluviatile_contig7.13661.1 vs. uniprot
Match: A0A0E9XNA4_ANGAN (Uncharacterized protein n=2 Tax=Anguilla anguilla TaxID=7936 RepID=A0A0E9XNA4_ANGAN)

HSP 1 Score: 81.3 bits (199), Expect = 6.710e-16
Identity = 56/174 (32.18%), Postives = 88/174 (50.57%), Query Frame = 1
Query:    4 LDKYPVVTKSTSSGLIGLLGDVLAQSIGWVLWGGPPLWATPDALWRSCAVM------LDGFFINGPLLHYAYEILEEYLPAEESLLAAVIQVGVDVFVIDPVFAFIFVWSTGLIEGRSVRHEILGTLEHDY-PTMVL-WLVVIGLCWAPLQIYLFNRYPVQFRVLTADLIDLVW 501
            L KYP++TKS +SG++  LG++L+Q++            T   L +   V+      + G F  GPL HY Y+++E   P+ E    A+ ++ +D  V  P F  +F +   ++EGR++     G +   Y P + + W V     W P Q    N  PVQFRVL A+L+ L W
Sbjct:   25 LKKYPILTKSVTSGILSALGNLLSQALE-----SRKKRTTDGNLRKGLNVLGPARFAVYGLFCTGPLSHYFYQLMELVFPSSEPY-CALKRLLLDRLVFAPAFLLLFFFVMNVLEGRTIS-AFQGKVRAGYWPALKMNWKV-----WTPFQFININYVPVQFRVLFANLVALFW 186          
BLAST of mRNA_P-fluviatile_contig7.13661.1 vs. uniprot
Match: UPI001B7EE91C (peroxisomal membrane protein 2-like n=4 Tax=Acipenseroidei TaxID=186622 RepID=UPI001B7EE91C)

HSP 1 Score: 80.1 bits (196), Expect = 1.740e-15
Identity = 58/183 (31.69%), Postives = 89/183 (48.63%), Query Frame = 1
Query:    4 LDKYPVVTKSTSSGLIGLLGDVLAQ---------SIGWVL-WGGPPLWATPDALWRSCAVMLDGFFINGPLLHYAYEILEEYLPAEESLLAAVIQVGVDVFVIDPVFAFIFVWSTGLIEGRS-------VRHEILGTLEHDYPTMVLWLVVIGLCWAPLQIYLFNRYPVQFRVLTADLIDLVW 501
            L KYP++TKS +SG++  LG++L+Q         ++G  L WGGP  +A            + G  + GP+ HY Y+ LE ++P+  S    + ++ +D  V  P F  +F  +   +EG+S       V+ E    L+ +      W V     W P Q    N  PVQFRVL A+L+ L W
Sbjct:   25 LKKYPILTKSVTSGILSALGNLLSQGLQRRGKGSNLGKGLEWGGPARFA------------VYGLCVTGPVSHYFYQCLELFVPSSASH-CILKRLLLDRLVFSPAFLLVFFLAMNFLEGKSWAAFQKRVKTEYWSALKMN------WKV-----WTPFQFININYVPVQFRVLFANLVALFW 183          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMD9_ECTSI1.660e-8872.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMD8_ECTSI4.050e-5450.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L428_9PHAE1.100e-2778.26Reverse transcriptase domain-containing protein n=... [more]
A0A7S3XMM5_HETAK1.680e-2536.46Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3DNH3_9STRA4.580e-2135.64Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3LFT8_9STRA3.860e-2035.91Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A2V3J3C5_9FLOR1.200e-1731.46Protein Mpv17 n=1 Tax=Gracilariopsis chorda TaxID=... [more]
UPI0018AE4B442.060e-1631.25protein Mpv17-like isoform X2 n=2 Tax=Dioscorea ca... [more]
A0A0E9XNA4_ANGAN6.710e-1632.18Uncharacterized protein n=2 Tax=Anguilla anguilla ... [more]
UPI001B7EE91C1.740e-1531.69peroxisomal membrane protein 2-like n=4 Tax=Acipen... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:3169022..3170509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score264.6
Seed ortholog evalue3.3e-68
Seed eggNOG ortholog2880.D8LMD9
KEGG koko:K13348
KEGG Pathwayko04146,map04146
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-05_002420.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons3
Model size534
Cds size534
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13661.1prot_P-fluviatile_contig7.13661.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 3169022..3170509 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817140.622733-CDS-P-fluviatile_contig7:3169021..31692971622817140.622733-CDS-P-fluviatile_contig7:3169021..3169297Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3169022..3169297 -
1693571261.7410586-CDS-P-fluviatile_contig7:3169021..31692971693571261.7410586-CDS-P-fluviatile_contig7:3169021..3169297Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3169022..3169297 -
1622817140.6336353-CDS-P-fluviatile_contig7:3170001..31701301622817140.6336353-CDS-P-fluviatile_contig7:3170001..3170130Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3170002..3170130 -
1693571261.7565572-CDS-P-fluviatile_contig7:3170001..31701301693571261.7565572-CDS-P-fluviatile_contig7:3170001..3170130Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3170002..3170130 -
1622817140.6431637-CDS-P-fluviatile_contig7:3170380..31705091622817140.6431637-CDS-P-fluviatile_contig7:3170380..3170509Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3170381..3170509 -
1693571261.767496-CDS-P-fluviatile_contig7:3170380..31705091693571261.767496-CDS-P-fluviatile_contig7:3170380..3170509Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3170381..3170509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13661.1

>prot_P-fluviatile_contig7.13661.1 ID=prot_P-fluviatile_contig7.13661.1|Name=mRNA_P-fluviatile_contig7.13661.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=178bp
ALDKYPVVTKSTSSGLIGLLGDVLAQSIGWVLWGGPPLWATPDALWRSCA
VMLDGFFINGPLLHYAYEILEEYLPAEESLLAAVIQVGVDVFVIDPVFAF
IFVWSTGLIEGRSVRHEILGTLEHDYPTMVLWLVVIGLCWAPLQIYLFNR
YPVQFRVLTADLIDLVWTCVTSFFCHV*
back to top

mRNA from alignment at P-fluviatile_contig7:3169022..3170509-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13661.1 ID=mRNA_P-fluviatile_contig7.13661.1|Name=mRNA_P-fluviatile_contig7.13661.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1488bp|location=Sequence derived from alignment at P-fluviatile_contig7:3169022..3170509- (Porterinema fluviatile SAG_2381)
GCCCTCGACAAATACCCGGTGGTGACCAAGTCTACTTCGTCAGGCCTCAT CGGCCTGCTGGGCGATGTTCTCGCGCAGAGCATCGGGTGGGTCCTTTGGG GCGGCCCACCCCTATGGGCAACACCAGACGTAAGTCAGACGTTCACGTTG ATGGTCGTGCGAATCAAATGCAAGGCTTTTCCGAAGTCAGAGGACCAATA CAGGGTTGGTGTAAGAGCTCGGGCTGTTGACGAACGCCCCTCTTGGGGGG CGACACGATCAAGAAACAAGGCACTCCTTGGCAGGCGTCCCGTTGCGTGC GCTCGTTTCGGCGTTGCGCACGCGCTCTTGCTCTTGTGTAAACAAACGCG TGACCCGATCCTTTGCCCATACCTGGCAGGCGCTTTGGCGGTCTTGTGCT GTAATGCTCGACGGCTTTTTCATCAACGGCCCGCTGCTGCACTATGCCTA CGAGATACTGGAGGAGTACCTGCCGGCGGAGGAAAGTCTCCTCGCGGCTG TGATCCAGGTAGATAAGTGCACCTAGACTTTCTCAGTGGTGTAGCTGCGC ACGTACGTCGTCTGCGTTGTTCAGTTCGGCATAGGGCACGGGGTGTCCAC TTTATTTTCCTTCCGCCGACCGGAATCTGGAAAGAAATCCGCTCGCTTTC GAAACTTTCTGAAGCGGAAAGTAGAGCGCAGGCGGCAACGCCGGCAGGGA TCGATAAAGTGATGGTCACTCTGCTAGGTGTTTTAGTTCGTCGCCGGGGC GATCTGCTAGCAGCTGCCAATATCCGAGGACAGCAGCACTAGCTCCGACG ACAGTTGCTTCTACACGCACACTCGGGGGTTCTTGATTCAGAAATTGTTC ATTAGTCAGCCAATCAGCTACGTCGGTAAGCAAGGAAAAAATATCAAAAT ACATGCACAAACTCACACGCACCCACGAACTCACACACAATAATAACTCC GATCATGTGCCGTCAGTCTTTTCCGCTTTAAGGATTCCCGCGCCAGGGAA CCTCCCCACTTCGGGCACGATATATTTTCGAGAAGTAGCGTGCCGCGCGA ATACGAAACGTGCCCGCTTCCGCTAGATATCAACGACGATTACCCGCGTA GAGGGCGGGAAAAAACTTGCGGTTTTATATAAAAACGGGGTCGAAGGCCG CTCATCATCAGTCCTCCTCGGACCAACCGATCGGTCGACCAACATGCCAT TGCTGACGTCAGGTCGGCGTGGACGTGTTCGTCATCGACCCGGTGTTCGC CTTCATCTTTGTGTGGTCCACCGGCCTGATCGAGGGCCGGTCGGTGCGGC ACGAGATCCTGGGCACCCTCGAGCACGACTACCCGACCATGGTGCTGTGG CTGGTCGTCATCGGGCTGTGCTGGGCGCCGCTGCAGATCTACCTCTTCAA CCGGTACCCGGTGCAGTTCAGGGTGCTGACAGCTGACCTTATCGACCTCG TCTGGACGTGCGTCACGAGCTTCTTCTGCCACGTGTGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig7:3169022..3170509-

>mRNA_P-fluviatile_contig7.13661.1 ID=mRNA_P-fluviatile_contig7.13661.1|Name=mRNA_P-fluviatile_contig7.13661.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1068bp|location=Sequence derived from alignment at P-fluviatile_contig7:3169022..3170509- (Porterinema fluviatile SAG_2381)
GCCCTCGACAAATACCCGGTGGTGACCAAGTCTACTTCGTCAGGCCTCAT
CGGCCTGCTGGGCGATGTTCTCGCGCAGAGCATCGGGTGGGTCCTTTGGG
GCGGCCCACCCCTATGGGCAACACCAGACGCCCTCGACAAATACCCGGTG
GTGACCAAGTCTACTTCGTCAGGCCTCATCGGCCTGCTGGGCGATGTTCT
CGCGCAGAGCATCGGGTGGGTCCTTTGGGGCGGCCCACCCCTATGGGCAA
CACCAGACGCGCTTTGGCGGTCTTGTGCTGTAATGCTCGACGGCTTTTTC
ATCAACGGCCCGCTGCTGCACTATGCCTACGAGATACTGGAGGAGTACCT
GCCGGCGGAGGAAAGTCTCCTCGCGGCTGTGATCCAGGCGCTTTGGCGGT
CTTGTGCTGTAATGCTCGACGGCTTTTTCATCAACGGCCCGCTGCTGCAC
TATGCCTACGAGATACTGGAGGAGTACCTGCCGGCGGAGGAAAGTCTCCT
CGCGGCTGTGATCCAGGTCGGCGTGGACGTGTTCGTCATCGACCCGGTGT
TCGCCTTCATCTTTGTGTGGTCCACCGGCCTGATCGAGGGCCGGTCGGTG
CGGCACGAGATCCTGGGCACCCTCGAGCACGACTACCCGACCATGGTGCT
GTGGCTGGTCGTCATCGGGCTGTGCTGGGCGCCGCTGCAGATCTACCTCT
TCAACCGGTACCCGGTGCAGTTCAGGGTGCTGACAGCTGACCTTATCGAC
CTCGTCTGGACGTGCGTCACGAGCTTCTTCTGCCACGTGTGAGTCGGCGT
GGACGTGTTCGTCATCGACCCGGTGTTCGCCTTCATCTTTGTGTGGTCCA
CCGGCCTGATCGAGGGCCGGTCGGTGCGGCACGAGATCCTGGGCACCCTC
GAGCACGACTACCCGACCATGGTGCTGTGGCTGGTCGTCATCGGGCTGTG
CTGGGCGCCGCTGCAGATCTACCTCTTCAACCGGTACCCGGTGCAGTTCA
GGGTGCTGACAGCTGACCTTATCGACCTCGTCTGGACGTGCGTCACGAGC
TTCTTCTGCCACGTGTGA
back to top