mRNA_P-fluviatile_contig7.13657.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13657.1
Unique NamemRNA_P-fluviatile_contig7.13657.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig7.13657.1 vs. uniprot
Match: D8LME5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME5_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.020e-12
Identity = 74/126 (58.73%), Postives = 87/126 (69.05%), Query Frame = 1 
Query:   19 VRAISLQG-EAWRTLRPSLLQNLPSLVRTWAQGEKLSRTSEAVTFNATEDSMALAWGVTEEVLRLADLSSGAGXXXXXXXXRCGSSXXXXXXXXXXNGYDDVDEIDGSEDEEWYDAFGSEMDSGFQ 393
            V+ +SLQG  AW   +  +     SL   + +GEK++  +E VT NATED+MAL WGVTEEVLRLAD++SGA XXXXXXXX     XXXXXXXXXX         DGSEDE WYDAFGSE +SGFQ
Sbjct:  302 VQPVSLQGASAW--FKRQVQAEHKSL--QYREGEKVTGANEPVTLNATEDAMALVWGVTEEVLRLADMNSGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XDGSEDE-WYDAFGSEFESGFQ 421
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LME5_ECTSI1.020e-1258.73Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:3132232..3134553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size747
Cds size747
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13657.1prot_P-fluviatile_contig7.13657.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 3132232..3134553 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817140.410678-CDS-P-fluviatile_contig7:3132231..31326271622817140.410678-CDS-P-fluviatile_contig7:3132231..3132627Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3132232..3132627 -
1693571261.5662727-CDS-P-fluviatile_contig7:3132231..31326271693571261.5662727-CDS-P-fluviatile_contig7:3132231..3132627Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3132232..3132627 -
1622817140.4213655-CDS-P-fluviatile_contig7:3133095..31333351622817140.4213655-CDS-P-fluviatile_contig7:3133095..3133335Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3133096..3133335 -
1693571261.5742536-CDS-P-fluviatile_contig7:3133095..31333351693571261.5742536-CDS-P-fluviatile_contig7:3133095..3133335Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3133096..3133335 -
1622817140.4308705-CDS-P-fluviatile_contig7:3134442..31345531622817140.4308705-CDS-P-fluviatile_contig7:3134442..3134553Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3134443..3134553 -
1693571261.5854218-CDS-P-fluviatile_contig7:3134442..31345531693571261.5854218-CDS-P-fluviatile_contig7:3134442..3134553Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3134443..3134553 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13657.1

>prot_P-fluviatile_contig7.13657.1 ID=prot_P-fluviatile_contig7.13657.1|Name=mRNA_P-fluviatile_contig7.13657.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=249bp
RPAVAAVRAISLQGEAWRTLRPSLLQNLPSLVRTWAQGEKLSRTSEAVTF
NATEDSMALAWGVTEEVLRLADLSSGAGGGGDGEEDRCGSSSGSNSSGSS
SNGYDDVDEIDGSEDEEWYDAFGSEMDSGFQVQQQRGRGLGSGRVGGRGG
IRSVFGGTAAGMSCRRKLNNKQDKQVPFGSGGRPPYLMRRNGSRDSSASS
GGQGGSGGHSLGGGETRPGASSAGGLSRSRSSFSRVQPAAGAREDDDSS
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mRNA from alignment at P-fluviatile_contig7:3132232..3134553-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13657.1 ID=mRNA_P-fluviatile_contig7.13657.1|Name=mRNA_P-fluviatile_contig7.13657.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2322bp|location=Sequence derived from alignment at P-fluviatile_contig7:3132232..3134553- (Porterinema fluviatile SAG_2381)
CGGCCCGCGGTGGCGGCGGTGAGGGCAATATCGCTTCAAGGGGAGGCGTG
GCGCACGCTTCGGCCTTCGCTGCTGCAGAACCTTCCTAGCCTCGTCCGGA
CGTGGGCCCAGGTGAGCCGGCGAGCCAGCCAGCCAAGCGGCGAGCCTTTC
GTCGTCGCTCGCGAACCACACGCGCGTGTGCGGCGCGGCTTGGCACACGC
GATCCTCGCGGATGACATGATGTGTTTGGATGTCTAGCTATGCTGTGATA
GTGTCTGAGAGCGTCTGGGTTTTCGTTTTAATTTTTTTTTTTGGGTACTT
CAACAACACACGGTTCAGTTCCAATTTGATTTGATTTTGATATCATTTTC
GGCTTGACTGAAGCACGAGCAAAGCGTCCGTCGCGCGGACCGTACACGCG
CACGGCACCCCCCCTCCTCGCCGGTAATTGATTCCATATTGTGATCGTTC
AGAGAGACATGGTTTTGATTTGATTTCGTGTGACGTGTGATTTTACTTTC
GATGTTGAACTTGGTTTATTTTACGTAATTTTTTTTGTTTGCGGGATTTG
GTACAGTCGATCGAGGCAGGAGCGTGTATACGTCCCGCGCTCCTGACTTC
AATGATGTGGTATGAAACGATCATTTCGGAGATGTTTGTTGTTGTTTCAT
TAGTTTGATTTTGTTGCATTCCAAGTTCTTGAGGCACGAGCGAGCGTCCG
TGGTCCGAATCACACGCGCCGACGTGCGTGTTCTTCGCCGAAGATGTGAT
GCGGTATGAATTTTCAATTCGATTCTTGCTTCGATTTCTCTTTACTTTGC
GATTTGATTTGCTTTATATGTGATGTGATTTTTATTTGCTTCGATTCAAT
TCGAATCGGGCGAGGTATCTGAAAGATGCGTAAAAAGTTTCTAATTGCTG
CCTTTTAACGGGCAGGAGGTGTTTGGTCGGTACCTTACCTTGGGTGGGGG
GCAGGAATGGCAGCCTTTCCGACACCGCTGCGACTGGGTTTGGCCCTGCG
AAGCTCGCCTGGCTGAGCCGCGGGGCCAGCGCTTAGATCGCCCTCAAATG
TGATTTTCGCGGGGAGAAAAAACCGTTTCGGTCGAGGACGCCGGAAAACA
AAATACTTTTTCTTTCTTCAAGAGCGGCAGCGTCGATCTTTAACCAAGGC
TCCCCCCTCTCCGGTCCCCTCCTCCGAATCCGCTGACTCGTCCTCCCACT
CTTGCTGCTCCCCAAAAGGGCGAGAAGCTGAGCAGGACGAGCGAGGCGGT
CACCTTCAACGCCACCGAAGACTCCATGGCTCTAGCGTGGGGCGTGACGG
AGGAGGTCCTGCGCCTGGCTGACCTCAGCTCTGGCGCGGGCGGCGGGGGC
GACGGGGAGGAGGACCGCTGCGGCAGCAGCAGTGGAAGCAACAGCAGTGG
CAGCAGTAGCAATGGATACGATGACGTCGACGAGATCGATGGGAGCGAAG
ACGAGGAGGTGTGGAATTATTTCGTTCATGTTTTATTCTGTCCTTTTTTG
GTTATGGGGTTCTGATATGTCGGCGGTTTCGCAGGGGATGACGCGTGGGT
GTGCGAATGGTAGATTCTCGACGAGGGGGGGCGCGCGGAATGGTGTCGGC
GGTTTCGGGGGGGAAGGAGGACGGGGGCGGGGAAGCGGAGGACTTGTGTT
ACGGCGGATACTGGAGCAGGGCGCGCGGTGGTGCTTTCCGACCTGCACCA
CCTGTCGTTTGCTGGTTGTAGTTGGTGCCAATTCGTCCCCAGTACCCCAC
ATGCTTATGAAGTGCAAATTCAACGGGAGAATGACCGCAGCATTACTAAC
CAGTCGAGCCCAGGCGTGGATGCTTTCGTTGTCGTTCGCAGGCCTCAACA
CTAACCTTTGAATGGTCTCCTCCCCCCCCCTTTTTTTTTTGCTTTTTTTT
TCGCATTTACTCGGGTATTTGTCCAGTGGTACGACGCGTTTGGGTCTGAG
ATGGACTCAGGCTTCCAGGTACAGCAGCAGCGGGGGCGGGGGCTGGGGAG
TGGCCGCGTCGGCGGCCGCGGCGGCATCCGCTCCGTGTTCGGCGGTACGG
CGGCGGGCATGAGTTGCCGCAGAAAGTTGAATAATAAACAGGATAAACAG
GTACCCTTCGGTTCGGGTGGCCGCCCCCCGTACCTGATGCGGCGCAATGG
CTCCCGAGACTCCTCCGCTTCGTCGGGAGGTCAGGGGGGGAGCGGTGGTC
ATAGTCTCGGCGGCGGTGAAACCAGGCCGGGTGCTAGCAGCGCAGGAGGG
CTTAGCCGCTCAAGGTCGTCGTTCTCGCGCGTCCAACCCGCTGCCGGAGC
ACGAGAGGACGATGACTCGTCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:3132232..3134553-

>mRNA_P-fluviatile_contig7.13657.1 ID=mRNA_P-fluviatile_contig7.13657.1|Name=mRNA_P-fluviatile_contig7.13657.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1494bp|location=Sequence derived from alignment at P-fluviatile_contig7:3132232..3134553- (Porterinema fluviatile SAG_2381)
CGGCCCGCGGTGGCGGCGGTGAGGGCAATATCGCTTCAAGGGGAGGCGTG
GCGCACGCTTCGGCCTTCGCTGCTGCAGAACCTTCCTAGCCTCGTCCGGA
CGTGGGCCCAGCGGCCCGCGGTGGCGGCGGTGAGGGCAATATCGCTTCAA
GGGGAGGCGTGGCGCACGCTTCGGCCTTCGCTGCTGCAGAACCTTCCTAG
CCTCGTCCGGACGTGGGCCCAGGGCGAGAAGCTGAGCAGGACGAGCGAGG
CGGTCACCTTCAACGCCACCGAAGACTCCATGGCTCTAGCGTGGGGCGTG
ACGGAGGAGGTCCTGCGCCTGGCTGACCTCAGCTCTGGCGCGGGCGGCGG
GGGCGACGGGGAGGAGGACCGCTGCGGCAGCAGCAGTGGAAGCAACAGCA
GTGGCAGCAGTAGCAATGGATACGATGACGTCGACGAGATCGATGGGAGC
GAAGACGAGGAGGGCGAGAAGCTGAGCAGGACGAGCGAGGCGGTCACCTT
CAACGCCACCGAAGACTCCATGGCTCTAGCGTGGGGCGTGACGGAGGAGG
TCCTGCGCCTGGCTGACCTCAGCTCTGGCGCGGGCGGCGGGGGCGACGGG
GAGGAGGACCGCTGCGGCAGCAGCAGTGGAAGCAACAGCAGTGGCAGCAG
TAGCAATGGATACGATGACGTCGACGAGATCGATGGGAGCGAAGACGAGG
AGTGGTACGACGCGTTTGGGTCTGAGATGGACTCAGGCTTCCAGGTACAG
CAGCAGCGGGGGCGGGGGCTGGGGAGTGGCCGCGTCGGCGGCCGCGGCGG
CATCCGCTCCGTGTTCGGCGGTACGGCGGCGGGCATGAGTTGCCGCAGAA
AGTTGAATAATAAACAGGATAAACAGGTACCCTTCGGTTCGGGTGGCCGC
CCCCCGTACCTGATGCGGCGCAATGGCTCCCGAGACTCCTCCGCTTCGTC
GGGAGGTCAGGGGGGGAGCGGTGGTCATAGTCTCGGCGGCGGTGAAACCA
GGCCGGGTGCTAGCAGCGCAGGAGGGCTTAGCCGCTCAAGGTCGTCGTTC
TCGCGCGTCCAACCCGCTGCCGGAGCACGAGAGGACGATGACTCGTCCTG
GTACGACGCGTTTGGGTCTGAGATGGACTCAGGCTTCCAGGTACAGCAGC
AGCGGGGGCGGGGGCTGGGGAGTGGCCGCGTCGGCGGCCGCGGCGGCATC
CGCTCCGTGTTCGGCGGTACGGCGGCGGGCATGAGTTGCCGCAGAAAGTT
GAATAATAAACAGGATAAACAGGTACCCTTCGGTTCGGGTGGCCGCCCCC
CGTACCTGATGCGGCGCAATGGCTCCCGAGACTCCTCCGCTTCGTCGGGA
GGTCAGGGGGGGAGCGGTGGTCATAGTCTCGGCGGCGGTGAAACCAGGCC
GGGTGCTAGCAGCGCAGGAGGGCTTAGCCGCTCAAGGTCGTCGTTCTCGC
GCGTCCAACCCGCTGCCGGAGCACGAGAGGACGATGACTCGTCC
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