mRNA_P-fluviatile_contig7.13652.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13652.1
Unique NamemRNA_P-fluviatile_contig7.13652.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig7.13652.1 vs. uniprot
Match: D8LMH5_ECTSI (RmlD_sub_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMH5_ECTSI)

HSP 1 Score: 371 bits (953), Expect = 1.650e-120
Identity = 180/197 (91.37%), Postives = 193/197 (97.97%), Query Frame = 1 
Query:  952 CIYEYDAEHTIGGKGFVETDPPNFKGSFYSDTKGMVENMLRVFPNVCVLRVRMPISDDLSPRNFVTKIVKYEKVVNIPNSMTVLTDLLPVSLAMSEKKLEGVYNFCNPGAISHNEILDMYKKYIDPSFTYTNFTVEEQDKILVAGRSNNTLDVSKMVNAVPELEIKEIHESMEGVFQRMKENLTAEGILPDNLPKRS 1542
            CIYEYDAEHTIGGKGF+E+D PNFK SFYSDTKGMVENMLRVFPNVCVLRVRMPISDDLSPRNFVTKIVKY+KVVNIPNSMTVLTDLLPVSLAM++KKLEGVYNFCNPGAISHNEILDMYK+YIDPS+TYTNFTVEEQDKILVAGRSNNTLDVSKMVNA+PE+EIKEIH +M+GVF+RMKENLTAEGI+PD LPKRS
Sbjct:  106 CIYEYDAEHTIGGKGFLESDAPNFKASFYSDTKGMVENMLRVFPNVCVLRVRMPISDDLSPRNFVTKIVKYDKVVNIPNSMTVLTDLLPVSLAMADKKLEGVYNFCNPGAISHNEILDMYKEYIDPSYTYTNFTVEEQDKILVAGRSNNTLDVSKMVNALPEMEIKEIHVAMQGVFKRMKENLTAEGIIPDKLPKRS 302
[Close]
BLAST of mRNA_P-fluviatile_contig7.13652.1 vs. uniprot
Match: A0A6U1NBW8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NBW8_9STRA)

HSP 1 Score: 315 bits (806), Expect = 1.750e-98
Identity = 151/197 (76.65%), Postives = 172/197 (87.31%), Query Frame = 1 
Query:  952 CIYEYDAEHTIGGKGFVETDPPNFKGSFYSDTKGMVENMLRVFPNVCVLRVRMPISDDLSPRNFVTKIVKYEKVVNIPNSMTVLTDLLPVSLAMSEKKLEGVYNFCNPGAISHNEILDMYKKYIDPSFTYTNFTVEEQDKILVAGRSNNTLDVSKMVNAVPELEIKEIHESMEGVFQRMKENLTAEGILPDNLPKRS 1542
            CI+EYDAEHTIGGKGF E D PNF GSFYS TKGMVE +L ++  +C+LRVRMPISDDLSPRNF+TKIVKY+KVVNIPNSMTVLTDLLP S+ MSEK L G+YNFCNPGAISHNEILD+YKK+IDP +TYTNFT EEQ+KIL A RSNNTLD SK+VN +  +EIK+IH +M+GVFQRMK NLT EGILPD LPKR+
Sbjct:  109 CIFEYDAEHTIGGKGFTEEDKPNFDGSFYSATKGMVEPLLSLYDTLCILRVRMPISDDLSPRNFITKIVKYDKVVNIPNSMTVLTDLLPASIIMSEKNLTGIYNFCNPGAISHNEILDLYKKHIDPDYTYTNFTEEEQNKILEAKRSNNTLDCSKLVNDLAPVEIKDIHTAMDGVFQRMKVNLTEEGILPDRLPKRA 305
[Close]
BLAST of mRNA_P-fluviatile_contig7.13652.1 vs. uniprot
Match: A0A835Z517_9STRA (RmlD_sub_bind domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z517_9STRA)

HSP 1 Score: 303 bits (775), Expect = 6.130e-94
Identity = 146/190 (76.84%), Postives = 167/190 (87.89%), Query Frame = 1 
Query:  952 CIYEYDAEHTIGGKGFVETDPPNFKGSFYSDTKGMVENMLRVFPNVCVLRVRMPISDDLSPRNFVTKIVKYEKVVNIPNSMTVLTDLLPVSLAMSEKKLEGVYNFCNPGAISHNEILDMYKKYIDPSFTYTNFTVEEQDKILVAGRSNNTLDVSKMVNAVPELEIKEIHESMEGVFQRMKENLTAEGILP 1521
            CI+EYDAEHTIGGKGFVE D PNF GSFYS TKGMVE MLRV+P V VLRVRMPISDDL  RNF+TKI KYEKVVN+PNSMTVLT+LLP SLA +EK+LEG+YNFCNPGAISHNEIL+MYKK+IDP+FTYTNF++EEQDKIL+A RSNNTLD +K+V+A+P +EI EIH +MEGVF RM+ NL  EG  P
Sbjct:  109 CIFEYDAEHTIGGKGFVEDDLPNFDGSFYSLTKGMVERMLRVYPGVLVLRVRMPISDDLVARNFITKITKYEKVVNVPNSMTVLTELLPASLAAAEKRLEGIYNFCNPGAISHNEILEMYKKFIDPNFTYTNFSIEEQDKILIARRSNNTLDCNKLVDALPGVEINEIHVAMEGVFARMRANLEKEGNFP 298
[Close]
BLAST of mRNA_P-fluviatile_contig7.13652.1 vs. uniprot
Match: A0A7S3MES0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MES0_9STRA)

HSP 1 Score: 290 bits (741), Expect = 1.120e-88
Identity = 136/197 (69.04%), Postives = 168/197 (85.28%), Query Frame = 1 
Query:  952 CIYEYDAEHTIGGKGFVETDPPNFKGSFYSDTKGMVENMLRVFPNVCVLRVRMPISDDLSPRNFVTKIVKYEKVVNIPNSMTVLTDLLPVSLAMSEKKLEGVYNFCNPGAISHNEILDMYKKYIDPSFTYTNFTVEEQDKILVAGRSNNTLDVSKMVNAVPELEIKEIHESMEGVFQRMKENLTAEGILPDNLPKRS 1542
            CI+EYD  HTIGG GF ETD  NF  SFYS TK +VE++L  +P  C LRVRMPISDDLSPRNFVTKIVKY++VV++PNSMTVLT+LLP+SL M+E+ L G+YNFCNPGAISHNE+L +YKKY+DPS+T+ NFT++EQ +IL AGRSNNTLD  K+V A+P+++I EIH +MEGVFQRM++NL AEGI PD+LPKR+
Sbjct:  124 CIFEYDDAHTIGGAGFKETDAANFHKSFYSHTKALVEDLLAQYPTTCTLRVRMPISDDLSPRNFVTKIVKYDRVVDVPNSMTVLTELLPISLTMAERGLTGIYNFCNPGAISHNEVLALYKKYVDPSYTWKNFTLDEQAQILKAGRSNNTLDHDKLVAALPDIQINEIHVAMEGVFQRMQKNLEAEGIWPDHLPKRA 320
[Close]
BLAST of mRNA_P-fluviatile_contig7.13652.1 vs. uniprot
Match: A0A4D9D6N6_9STRA (RmlD_sub_bind domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6N6_9STRA)

HSP 1 Score: 280 bits (716), Expect = 3.970e-85
Identity = 133/197 (67.51%), Postives = 163/197 (82.74%), Query Frame = 1 
Query:  952 CIYEYDAEHTIGGKGFVETDPPNFKGSFYSDTKGMVENMLRVFPNVCVLRVRMPISDDLSPRNFVTKIVKYEKVVNIPNSMTVLTDLLPVSLAMSEKKLEGVYNFCNPGAISHNEILDMYKKYIDPSFTYTNFTVEEQDKILVAGRSNNTLDVSKMVNAVPELEIKEIHESMEGVFQRMKENLTAEGILPDNLPKRS 1542
            CI+EYD +H IGG GF E D PNF GSFYS TK  +E+ML+ + NVC+LRVRMPISDDL+ RNFVTKIVKY+KVVN+PNSMTVLTDLLP+SL M+ +KL G+YNF NPGAISHN+IL +YKK++DPS+T+ NFT++EQ+KIL A RSNN LD +K   A+P++ I +IHE+ E VFQRMK NL AEGI PD LPKR+
Sbjct:  106 CIFEYDEKHPIGGAGFTEEDSPNFFGSFYSKTKAYMEDMLKSYNNVCILRVRMPISDDLNSRNFVTKIVKYDKVVNVPNSMTVLTDLLPISLLMAARKLTGIYNFTNPGAISHNQILALYKKHVDPSYTWENFTIDEQNKILAAKRSNNELDTTKFCAALPDVHIPDIHEACEKVFQRMKVNLEAEGIWPDKLPKRT 302
[Close]
BLAST of mRNA_P-fluviatile_contig7.13652.1 vs. uniprot
Match: A0A1Z5KT21_FISSO (3,5-epimerase/4-reductase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KT21_FISSO)

HSP 1 Score: 262 bits (669), Expect = 3.940e-78
Identity = 129/196 (65.82%), Postives = 155/196 (79.08%), Query Frame = 1 
Query:  952 CIYEYDAEHTIG-GKGFVETDPPNFKGSFYSDTKGMVENMLRVFPNVCVLRVRMPISDDLSPRNFVTKIVKYEKVVNIPNSMTVLTDLLPVSLAMSEKKLEGVYNFCNPGAISHNEILDMYKKYIDPSFTYTNFTVEEQDKILVAGRSNNTLDVSKMVNAVPELEIKEIHESMEGVFQRMKENLTAEGILPDNLPK 1536
            CIY YDA H +G G GF E D PNF GSFYS+TK  VE +L+ +P   +LRVRMPISDDLS R+FVTKI KYEKVVNIPNSMTVLT+LLP SL M++K L G+YNF NPG ISHN++LD+YKKYIDP F Y+NFT+EEQ++IL A RSNN LD +K++     +EI +I  +M+  FQRMK+NL AEGILPDNLPK
Sbjct:  105 CIYTYDAAHPLGSGIGFTEEDKPNFTGSFYSETKSYVEPLLKQYPTCMILRVRMPISDDLSSRSFVTKIAKYEKVVNIPNSMTVLTELLPASLKMAQKGLTGIYNFTNPGVISHNQVLDLYKKYIDPDFQYSNFTIEEQNEILKAPRSNNELDTTKLLRDTEGIEINDILTAMDLCFQRMKKNLEAEGILPDNLPK 300
[Close]
BLAST of mRNA_P-fluviatile_contig7.13652.1 vs. uniprot
Match: A0A7S3ZMC1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMC1_9STRA)

HSP 1 Score: 255 bits (651), Expect = 1.330e-75
Identity = 128/194 (65.98%), Postives = 154/194 (79.38%), Query Frame = 1 
Query:  952 CIYEYDAEHTIGG---KGFVETDPPNFKGSFYSDTKGMVENMLRVF-PNVCVLRVRMPISDDLSPRNFVTKIVKYEKVVNIPNSMTVLTDLLPVSLAMSEKKLEGVYNFCNPGAISHNEILDMYKKYIDPSFTYTNFTVEEQDKILVAGRSNNTLDVSKMVNAVPELEIKEIHESMEGVFQRMKENLTAEGILP 1521
            CI+EYD  H +GG     F E D  NF GS+YS TKG  E MLR +  ++ VLRVRMPISDDLSPRNF+TKI KYEKVVNIPNSMTVL DLLP SLA+S++KL G+YNFCNPGAISHNE L++YKK++DP +T+TNFT+EEQDKIL A RSNN LD SK+VNA+P+LEI EIH +++    RMK+NL A+G  P
Sbjct:  110 CIFEYDDAHPLGGGVSTAFTEEDRANFTGSYYSLTKGFCEEMLRAYLDHLTVLRVRMPISDDLSPRNFITKISKYEKVVNIPNSMTVLHDLLPASLALSKRKLSGIYNFCNPGAISHNECLELYKKHVDPDYTWTNFTLEEQDKILAAKRSNNELDCSKLVNALPDLEIPEIHVAVDRCCARMKKNLDAQGWKP 303
[Close]
BLAST of mRNA_P-fluviatile_contig7.13652.1 vs. uniprot
Match: A0A7S3Q2R9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q2R9_9STRA)

HSP 1 Score: 252 bits (643), Expect = 2.040e-74
Identity = 124/196 (63.27%), Postives = 153/196 (78.06%), Query Frame = 1 
Query:  952 CIYEYDAEHTIG-GKGFVETDPPNFKGSFYSDTKGMVENMLRVFPNVCVLRVRMPISDDLSPRNFVTKIVKYEKVVNIPNSMTVLTDLLPVSLAMSEKKLEGVYNFCNPGAISHNEILDMYKKYIDPSFTYTNFTVEEQDKILVAGRSNNTLDVSKMVNAVPE-LEIKEIHESMEGVFQRMKENLTAEGILPDNLP 1533
            CI++YD  H +G G GFVE   PNF  SFYS+TKG +E ML+ FPN  +LRVRMPISDDL  RNF+TKI KYE++VNIPNSMTVLT++LP SLAM++  L GVYNF NPG ISHNE LD+YKKYIDP++TY NFTVEEQ K++ AGRSNN LD +K++  +PE + I +I  +++  FQRMK NLT  G LPDN+P
Sbjct:  109 CIFKYDEAHPLGSGIGFVEESKPNFDESFYSETKGYMEEMLKCFPNTLILRVRMPISDDLIHRNFITKIAKYERIVNIPNSMTVLTEMLPASLAMAKADLRGVYNFTNPGVISHNECLDLYKKYIDPTYTYKNFTVEEQSKVIKAGRSNNELDTTKLMRDMPEGVVINDIKTAVDLCFQRMKVNLTDMGWLPDNMP 304
[Close]
BLAST of mRNA_P-fluviatile_contig7.13652.1 vs. uniprot
Match: B7GAV2_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GAV2_PHATC)

HSP 1 Score: 251 bits (641), Expect = 5.450e-74
Identity = 125/196 (63.78%), Postives = 154/196 (78.57%), Query Frame = 1 
Query:  952 CIYEYDAEHTIG-GKGFVETDPPNFKGSFYSDTKGMVENMLRVFPNVCVLRVRMPISDDLSPRNFVTKIVKYEKVVNIPNSMTVLTDLLPVSLAMSEKKLEGVYNFCNPGAISHNEILDMYKKYIDPSFTYTNFTVEEQDKILVAGRSNNTLDVSKMVNAVPE-LEIKEIHESMEGVFQRMKENLTAEGILPDNLP 1533
            CI++YD  H +G G GF E D PNF GSFYS TKG +E ML+ +PN  +LRVRMP+SDDL  RNFVTKI KYEKVV++PNSMT+L ++LP SLAM++K L GVYNF NPG ISHN++LD++KKYIDP+FTY+NF+VEEQ KIL A RSNN LD +K++  VPE +EI +I  + +  FQRMK NL A G LPDNLP
Sbjct:  105 CIFKYDDAHPLGSGIGFTEEDVPNFDGSFYSKTKGFMEPMLKEYPNCLILRVRMPVSDDLFHRNFVTKIAKYEKVVDVPNSMTILHEMLPASLAMAQKGLTGVYNFTNPGVISHNQVLDLFKKYIDPNFTYSNFSVEEQAKILKAARSNNELDTTKLMRDVPEGVEINDILTAFDKCFQRMKVNLEAMGWLPDNLP 300
[Close]
BLAST of mRNA_P-fluviatile_contig7.13652.1 vs. uniprot
Match: K0TKT8_THAOC (RmlD_sub_bind domain-containing protein n=2 Tax=Thalassiosirales TaxID=33847 RepID=K0TKT8_THAOC)

HSP 1 Score: 250 bits (638), Expect = 6.030e-74
Identity = 126/198 (63.64%), Postives = 154/198 (77.78%), Query Frame = 1 
Query:  952 CIYEYDAEHTIG-GKGFVETDPPNFKGSFYSDTKGMVENMLRVFPNVCVLRVRMPISDDLSPRNFVTKIVKYEKVVNIPNSMTVLTDLLPVSLAMSEKKLEGVYNFCNPGAISHNEILDMYKKYIDPSFTYTNFTVEEQDKILVAGRSNNTLDVSKMVNAVPE-LEIKEIHESMEGVFQRMKENLTAE-GILPDNLPK 1536
            CI++YD  H +G G GF E D PNF  SFYS TKG +E ML+ +P   +LRVRMPISDDLS RNF+TKIVKYE+VVNIPNSMTVL ++LP SLAM++K L GVYNFCNPG ISHNE LD+Y KYIDP++TY NFT+EEQ K+L AGRSNN LD +K++  +PE ++I +I  ++E   QRM+ NLT E G LPD LPK
Sbjct:   88 CIFKYDDAHPLGSGIGFTEEDAPNFDESFYSQTKGYMEPMLKCYPTAMILRVRMPISDDLSHRNFITKIVKYERVVNIPNSMTVLHEMLPASLAMAKKGLTGVYNFCNPGVISHNECLDLYTKYIDPTYTYKNFTIEEQSKVLKAGRSNNELDATKLMRDMPEEIKINDIKTAVELCMQRMQRNLTEEFGPLPDALPK 285
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMH5_ECTSI1.650e-12091.37RmlD_sub_bind domain-containing protein n=2 Tax=Ec... [more]
A0A6U1NBW8_9STRA1.750e-9876.65Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z517_9STRA6.130e-9476.84RmlD_sub_bind domain-containing protein n=1 Tax=Tr... [more]
A0A7S3MES0_9STRA1.120e-8869.04Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A4D9D6N6_9STRA3.970e-8567.51RmlD_sub_bind domain-containing protein n=2 Tax=Mo... [more]
A0A1Z5KT21_FISSO3.940e-7865.823,5-epimerase/4-reductase n=2 Tax=Fistulifera sola... [more]
A0A7S3ZMC1_9STRA1.330e-7565.98Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3Q2R9_9STRA2.040e-7463.27Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
B7GAV2_PHATC5.450e-7463.78Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
K0TKT8_THAOC6.030e-7463.64RmlD_sub_bind domain-containing protein n=2 Tax=Th... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:3048166..3054650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score372.5
Seed ortholog evalue1.8e-100
Seed eggNOG ortholog2880.D8LMH5
Preferred nameGAL102
KEGG rclassRC00182,RC00402,RC01014,RC01531
KEGG koko:K01710,ko:K12450,ko:K12451
KEGG ReactionR00293,R06513,R08704,R08705,R08935
KEGG Pathwayko00520,ko00521,ko00523,ko00525,ko01055,ko01130,map00520,map00521,map00523,map00525,map01055,map01130
KEGG ModuleM00793
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0006810,GO:0007275,GO:0008150,GO:0008152,GO:0008460,GO:0008830,GO:0008831,GO:0009058,GO:0009225,GO:0009226,GO:0009506,GO:0009791,GO:0009812,GO:0009813,GO:0009914,GO:0009966,GO:0009987,GO:0010154,GO:0010191,GO:0010192,GO:0010214,GO:0010253,GO:0010280,GO:0010315,GO:0010489,GO:0010490,GO:0010646,GO:0010817,GO:0010928,GO:0016020,GO:0016491,GO:0016614,GO:0016616,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016854,GO:0016857,GO:0018130,GO:0019305,GO:0019438,GO:0022414,GO:0023051,GO:0030054,GO:0030154,GO:0032501,GO:0032502,GO:0033478,GO:0034641,GO:0034654,GO:0042127,GO:0042440,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046383,GO:0046483,GO:0048046,GO:0048316,GO:0048583,GO:0048608,GO:0048731,GO:0048856,GO:0048869,GO:0050377,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051552,GO:0051553,GO:0051554,GO:0051555,GO:0055044,GO:0055086,GO:0055114,GO:0060918,GO:0061458,GO:0065007,GO:0065008,GO:0071704,GO:0071944,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.dTDP-glucose 4,6-dehydratase activity
EggNOG OGsCOG1088@1,KOG0747@2759
EC4.2.1.46,4.2.1.76
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons6
Model size2135
Cds size864
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13652.1prot_P-fluviatile_contig7.13652.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 3048756..3053969 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817139.5179503-UTR-P-fluviatile_contig7:3048165..30487551622817139.5179503-UTR-P-fluviatile_contig7:3048165..3048755Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 3048166..3048755 -
1693571259.9265277-UTR-P-fluviatile_contig7:3048165..30487551693571259.9265277-UTR-P-fluviatile_contig7:3048165..3048755Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 3048166..3048755 -
1622817139.5964468-UTR-P-fluviatile_contig7:3053969..30546501622817139.5964468-UTR-P-fluviatile_contig7:3053969..3054650Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 3053970..3054650 -
1693571260.1782146-UTR-P-fluviatile_contig7:3053969..30546501693571260.1782146-UTR-P-fluviatile_contig7:3053969..3054650Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 3053970..3054650 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817139.5303445-CDS-P-fluviatile_contig7:3048755..30488961622817139.5303445-CDS-P-fluviatile_contig7:3048755..3048896Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3048756..3048896 -
1693571259.9478598-CDS-P-fluviatile_contig7:3048755..30488961693571259.9478598-CDS-P-fluviatile_contig7:3048755..3048896Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3048756..3048896 -
1622817139.5415928-CDS-P-fluviatile_contig7:3049234..30493871622817139.5415928-CDS-P-fluviatile_contig7:3049234..3049387Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3049235..3049387 -
1693571259.9616747-CDS-P-fluviatile_contig7:3049234..30493871693571259.9616747-CDS-P-fluviatile_contig7:3049234..3049387Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3049235..3049387 -
1622817139.552579-CDS-P-fluviatile_contig7:3050207..30502881622817139.552579-CDS-P-fluviatile_contig7:3050207..3050288Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3050208..3050288 -
1693571259.9733236-CDS-P-fluviatile_contig7:3050207..30502881693571259.9733236-CDS-P-fluviatile_contig7:3050207..3050288Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3050208..3050288 -
1622817139.5639257-CDS-P-fluviatile_contig7:3051127..30512321622817139.5639257-CDS-P-fluviatile_contig7:3051127..3051232Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3051128..3051232 -
1693571259.9829986-CDS-P-fluviatile_contig7:3051127..30512321693571259.9829986-CDS-P-fluviatile_contig7:3051127..3051232Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3051128..3051232 -
1622817139.5744846-CDS-P-fluviatile_contig7:3052835..30529501622817139.5744846-CDS-P-fluviatile_contig7:3052835..3052950Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3052836..3052950 -
1693571259.9927886-CDS-P-fluviatile_contig7:3052835..30529501693571259.9927886-CDS-P-fluviatile_contig7:3052835..3052950Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3052836..3052950 -
1622817139.5852761-CDS-P-fluviatile_contig7:3053700..30539691622817139.5852761-CDS-P-fluviatile_contig7:3053700..3053969Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3053701..3053969 -
1693571260.0028894-CDS-P-fluviatile_contig7:3053700..30539691693571260.0028894-CDS-P-fluviatile_contig7:3053700..3053969Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3053701..3053969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13652.1

>prot_P-fluviatile_contig7.13652.1 ID=prot_P-fluviatile_contig7.13652.1|Name=mRNA_P-fluviatile_contig7.13652.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=288bp
MKGVISCLVVLARHYEECRVKYDGEGKRFLLAKGVILTITMGIDTANNSG
IGFVDRPASRNLLRPAERRWRRSPSCCSGWTSNRCSPSARCIYEYDAEHT
IGGKGFVETDPPNFKGSFYSDTKGMVENMLRVFPNVCVLRVRMPISDDLS
PRNFVTKIVKYEKVVNIPNSMTVLTDLLPVSLAMSEKKLEGVYNFCNPGA
ISHNEILDMYKKYIDPSFTYTNFTVEEQDKILVAGRSNNTLDVSKMVNAV
PELEIKEIHESMEGVFQRMKENLTAEGILPDNLPKRS*
back to top

mRNA from alignment at P-fluviatile_contig7:3048166..3054650-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13652.1 ID=mRNA_P-fluviatile_contig7.13652.1|Name=mRNA_P-fluviatile_contig7.13652.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=6485bp|location=Sequence derived from alignment at P-fluviatile_contig7:3048166..3054650- (Porterinema fluviatile SAG_2381)
TCGGGCTAATGTCATCGGGACGCTGAACCTGGCCGATGTCTGCTCGGAGA
GGGGGATCCACTGCACCATCTACGCCACCGGGTGAGTCGATGTCTCGGAC
TTGGACTCGTTCCCCTTGGATGTATCACGCAGATTGCAAGAGTGAGTTGG
CCAACCCCCAGTTTTTTTCGGGGGGGTTCAGGCTTGGTTGCGTCAAACCG
AGTAAGGTGCCAAGTGCCCAAACGGTGGCGTTGCAAGGGTGGACCTTGCC
TTCAGACCTTGAGAAGACGCGTTGGTGGGAGAGGTACCGGCTCTGCATGT
TACGGAGCAATTGAGCTGTCGATCAGGTTCGGAGGCTCAACACTGCCGGC
AAAAGTAGAACTCTTTGTTACTTTTTACGGCACTCTACTCTCGTGCGGCA
ATTTGTAAAGTTCGCCACTACGTTTTCGCTTGACCATGCAATATTTGCCC
GTCATGCCCGTTATGCGCCAACAAGTGTCACAAGTCTCGAAAAGTCCATT
GTAAAAATCAAGGATGCAGAGTCGCGGCTCTCTCGAACCACTCTTCTTTG
AAACGATGTATGGTTGGTCGGGAGGGGTGTCACGCCGAGAAGTTTACTGA
AACGGCAAGTGAGAGCAAAAACGAGGCCGAAGTAGACAAAGTGATAGGAG
ATGAAGTGGACAAAACCGAAGGAAAGGTTCAATGAAAGGAGTAATCAGCT
GTTTGGTTGTGTTGGCGAGGCACTACGAAGAATGCAGGGTGAAATATGAT
GGTGAGGGCAAAAGATTCCTCCTGGCGAAGGGCGTGATACTCACGATCAC
CATGGGTATCGACACAGCGAACAATAGCGGGATTGGGTTTGTGGATAGAC
CAGCAAGTCGCAACCTTTTGAGGCCTGCTGAGCGCAGGTGGAGACGTTCA
CCCAGCTGCTGCTCTGGATGGACAAGCAATCGCTGCTCACCAAGTGCAAG
GTACAATCACAGCGGGGTAGAATAGATCTCATGAAAGCATCAAGTCGAAG
CAAAGCGACCAATTAGCGGTGGACCAGTAGAAGGATGGGGATCGAGACTC
CACTAATTCATCCTAGATCACGAGCCGCTGTTCTTAAAGGCAGATTTTGC
CCAAACGGCACTGCGATGGAATCTCAAAAGCTACAAGTCACTGCTCCCTG
ATGTTTGTGTGCCGCATGACCACAAACTTACGACTGCTTAGGGACAAATA
TCACGCGAACTCCGATACGGTACGTCTGGCACATCGCGTCCAGCGACGTT
CCGTTTGCGCGGGCTTCAAGCGTGTTGCAGGTGGGGCAGGAGAAGAGCCG
ACATGACGAGCACCCCCGCACTTTGTGTCCGTGTCCAAGGTTTGGAATTG
TAACCCCTTGCACTCCTCGATCAAGGAGCGTGACACAAGCAACATCCGTT
ACTCGTGTTGTTACTGCAGTCAATCTGTCCTCAGACTACGAATCGTCCGC
TGCCACTGGCTGCGAGAGGGTGCATCTTGCATGATGCATCGCTTGATAAC
CTCATGACAAGCAAAGAGTTTCAAGAGCACCCCATTTTTGTTTCCCGGTC
AGCCTTCACGCAACAGACAGGTGCGTGCGCATCGTCTTGGCGACCACACA
CGAGCATTTCGCGTGTTTTTGAGCCAAACCCGCCGCCAGTTTTTATCGGA
TGCACTCTACAATACTGTTTAAATCATCCCGGCGTAACCCCCCCGTGAAG
GTGCATCTACGAATACGACGCGGAGCACACCATCGGGGGGAAAGGCTTCG
TGGAGACCGACCCTCCCAACTTCAAGGGTTCCTTTTACTCCGACACGAAG
GGCATGGTGGAGAACGTGAGTCGCTGCGCCTTATTTTGTGGGTCGCTCTT
TAGCGCTTCACGCGCACCCTCTTGTACCTTGACCCGCCTGTGTTGCCGCG
CCGCACGCACCTCTTGGATGTTTCCCCCCCATGCTTGCGCAGAAAAAAGA
CGGCATGGGCTGTCGACAATTCCTAGCTTTTATGAGCGGCGGTCGTGGGC
CCGGTCAAGAGGTTTCCTCTCGCACGAAACATACTGGTGTACAACCCAAT
CCAACCCGGCCCGACCCAACCTCACCTACAGAACCGCGCCACCACGAACA
TGTGGAAAGTAACAAAAAGGCTGATAGTATTCATTATTTGAGAACTACCG
CTCATGTTTGATGCCTGGATCAACGGCCTCCACACAAGAACAAACATATT
TATTATTAGCAGTTCACAAAGGAGAAAAGAACCCGAGCCTCTCGCGCGAC
AGCATGTTCTTCAGTGGTGGCGCGTTCTGCATCGATCCAATCGCAACCCC
GACCGCAGCGAGCCAAGCCGCTACAACCTCCCGAACCCCCTGTGCACACC
CACACACCCGACCTCGCAAGGGCTCCCGTCCAGTACAATCACATGATAGT
TTAACCCATTCGTACGCGTGTTGCTTCATGTGGGCAGCAGAAATAAATCC
CATGCGTGTGATACCGTTGTGTGCATGCGCAAGACACCGAAGTAGATTAT
GTTTCTTCTCCTTCCTATCACGTTTGTTTGAGGCTTTTTGTTTGCGTTTT
AAGCGGCGAGATAAGCAGTGCAACACAGCCGCACGCACAGGGTGTATACG
CGGCGATCGGGGTCCGCCACGATGTGTGCTGATAGCAACATCGCTGCCGT
CACACCACGGCACTAAATTTTGAGCACGTTTCATCACGTACTGGCACACC
GACAGGTAGAGGAGAGCGGTCAGCCGGGTTTGCGCTGCAGACTGTCGGAA
TTGAGAGGAAAGAGGACACCTTTTGTTTTGACGCGTGCCTCACGCTTTGC
AAGCACACGCGTTTGCCAACACGGAAAATTGATAACTCATCAATGATCCC
TACCCCTGCGGGGCCTGAGATCGACCCCCCTGTTGCCGGAAGAAGCTCCG
TTGGTCTCAATTACCAGCGTGGTGAAATAATAACAAGTCCGAGAAGGGCT
GAAAAGCCCATGTTCCAGCCTACTGCTTTTTTTCTGAAGATTTTTCTCGA
GACGCGCTACGGCGATTTGCTATGCATGGCCGTAGGGTTCGATGACCCGC
AGCGGCGCGCCTCGGTGTCGTGGGCAAGGCTTGTCTCCTACTCTTGGCCT
CTCCATGCCCTCGGAGATCATGCCCTCTGCCAGCCGTAAATCGGTATGTT
TTTACGCACTTTAGAAACATCGAATTCCCAACTTGTGACGCCTCGATTTC
ACGAAGCATCTCTCATTCCCAATGCAGGAGCTATATTTGCGTTCCCGGAA
ATCTGGTGTAGCCTGTAGATACGTTTCCTCGTCTGCTGCTGTGTACTCGC
TTCGTGCGGCATGCCGCAACTGCTTCCCACAAACATTCATGCCGCGGCTA
CGACTTTTATCCCGTGCGTTGTTGCTCTCCTTTGCTGTCGTGTTGCACCC
CTGCTCGTATTTGCAAAGATGCTGCGGGTGTTCCCCAACGTTTGTGTACT
GAGAGTAAGAATGCCCATCTCCGACGACCTCAGCCCCCGCAACTTCGTCA
CCAAGATCGTCAAGTACGAGAAGGTAACGCGTCCCTGTTGTTCTTATGGA
GCTCAAGTGAGCGAGTCGACGTTGGAAAAGCAAAACCGAGAAGAATGAGA
AGTCGTCACCAATCCACCCCCCCTCCGCCCCCCCCCTCCTTCGCGCGATG
GCCAACAATGTCATGGCGGTTCGCGGTTGGTGGGCGCGAGTTGGCGCGGC
CGAAATTCCGGAGCACTCACTCCGGGCTCTTTTGGAGTGCGAGGTCAAGA
GTCTTTCGACTGCGGCATGCAGGAAGAAAAGTGCTCCTCGAATGTGACTG
CGGTGCCGAATGCGAAGACCGGGTACATGTAGTTGCGGAATGCCCGTTAT
ACGATCAGGAAAGAGGAGGGTACATGGTTGAGCTGGAAAAAGTAGACAGT
CGGTACAGAGAGAAGTTTGAGGCATGGAACAAAGAGGAGAAGGCGGTAGC
GGTACTGGGGTGTACGATGTGGCCCAGGAAGGACAGGTATAAAGTAGACA
GGTTAGGGAAAACATTTTTGAGCCACCTTTGGCAAAGTAGGAAGGAACGA
TTGGCCATCGCTGATCGATCCTGCGGGAACAATGCTCGTCCTCTCGAGGA
CGCGTGGTCAACGGCTAACAACTATGGCATGCAAAACATGAGTACGCCCC
CGTCTCCTGGCTCAGAAGGTGCCCAATTTCGAATATCGCTCGAAGTCATC
CATCTAATGTGATCTGCTTGATCGATTTTCATTAGCCCTATTTCCTTGCT
CCGCTATGGCTTCCCACTGCTGTGCTTCATCCATTTTCTTTGGCTCACTC
GCCCGTTACCGTTATCTTCCGTTATCTTCGTTACCGTTATCTTCGACTAC
TGTTTTCTGCAGGTGGTGAACATCCCAAATTCAATGACCGTGCTCACGGA
CCTTCTGCCTGTGTCCCTGGCCATGTCGGAGAAAAAGTTGGAGGTGAGGG
AAGGCGCAACACGCCGTGTGGGTGCGAGCCTCGTTCCGAGATTATGCTTC
GTCGTTGTTGTTGTTGTTGCTCTTCTTCTTCCTCTTGTTTTGTTCCTGAT
GTCCTCTTGTTGGTGTTGTTGTTCTTCTTCTTCTTCTCCTTCGCGCGCTT
GTCTTTTTTTCTTCTCCCTCCCCGTTCCCTCCCGTTCCCCCCGATCCCCC
GCCCCCGTTCCCCCCCCATCCCCCGCCCCCGTTCCCCCCTCCTTTTTCTT
TCCCTTTTGAATCTCCGTGAGCGCTGGTAGTTGTTGGTGATGTGCCTACC
TCGCCACACTGTTGTTTTTGTTGCGCTGGTATGGCTGTTGTTGTTGCCGC
TGGGGATGGTGTCGTCGGCCTCACGAACGGTCTACTCGGTTACTCCGCCG
CTTCGATCAACGCTCATCATGCTCTTCGGCACGCCTTCCGGCTCATCCAC
CAGCCTGCAAGTCTGAAACACGTGAAGATGTGATATCGTCTTGACTGCTT
GACTTGTTTTCAATGGCTTCAAGCAGCGTGCGGTACCTTTTCTAATCATT
TTGCCATGTCGGGACGTGAGGTTTGAAGCCGTACAACATGTGCTAGCATT
CATCAGTCTTCATTATTGTTTTTGTTTTTCCCGCCCTTCAACCGCAAGTC
AGCTCTCGAAAGCACGTGGGCGTGCAACATTGCTGGGGTCAGAGAGGAGG
GTGGTAAGACTTGTGGTTTGCTGATTTCTGTTTCGTGTTCCACCTGTTCT
CGTGAAACCCAACCTGTACGCGTTTTGAACTTTTGCTGTTGCCGCCGCTG
TGCTTTTCCTCAGGGGGTCTACAATTTTTGCAACCCGGGAGCGATCAGCC
ACAACGAGATCTTGGACATGTATAAGAAATACATCGACCCTTCCTTCACT
TACACGAACTTCACGGTGGAGGAGCAGGACAAGATTTTGGTGGCAGGGCG
ATCCAACAACACCCTGGTACGAGCCAGTTACGTCCGTTAACAGATTTCCG
CCCCGCAATGTTCATGCAGTGTGGCGAAAGGAGCGATGTCTAGGTATCCA
AGAACCAACGCTGATCGTTCGGGGGCGGTTGCTTAGTCCCAGCGTTCACC
TCTCCTTGGCGTGCGTAGCGATCGCTCGAATGGAGTAGCGGGCGCATTCC
CCGGCGGGGTAACCGAACGTGTCCGAGGGCATTCGGAGTGACACAAAGGG
GTGCTCGATTCACACGCTCAATGAAGAAACCAAGTTTCAGGCCTGAAGGA
AAGTCCCAGATGAGTCGCTTGACATACCCACCCCGTCTCCAACAACCCTC
GCAGGACGTTTCGAAGATGGTGAATGCGGTGCCGGAGTTGGAGATCAAGG
AGATCCACGAATCCATGGAAGGGGTGTTCCAGCGAATGAAGGAGAACCTG
ACGGCAGAGGGCATCCTCCCGGATAACCTACCCAAGCGCTCATAGCTAAA
CCTTGAATGTAAACTGACGCCTCTCCTCCCCTTGAAGCACGTATTCGGAT
GTGCTTTTCTCCTTCACCGGGCTGCCTCCTGCGTGTGAGAGCGCAGACCG
AAGCATTGCTAGATTTCCTGTTTTACACAAGAATTTTGATGTCTCAACAC
GAAGATCACGTGGCAGGGGGTGGAGAGGGGCGGAGGATCGCCGTATTCAT
ACGGTAGATCGGTAACTCGTCAGCGCTTGCTAGATTTTTTGGGTCAAGCC
CCGTCAAGCGGGTCGTTTGGCGCAGGCGGTACTCGCAAAGCGCAAAAACT
TGCCTCTGCGCCAGAAAGGCTTCTTCCGCAGACAAATGAGTGGGTCGTGT
TTGAGGACAAGATGCACGCACGTGTTGTGGGAGGAAGATAAAAAAGGCGA
GTAGACAAGCGGGTAGCCCACCCCTTCAGACAATGGTGGGTACTCGGAAA
AAGCACTTTCCTCGGGAGACGCCAGCACGCACCCCAAAACGCTGGAAACG
CGATTCTGACGCATGCATGGCATGGTCATGGCCTATGCCGAGCGTGGTAA
GCATCAACTTCTGGCAACGTTCAACGAAGTTCCGG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig7:3048166..3054650-

>mRNA_P-fluviatile_contig7.13652.1 ID=mRNA_P-fluviatile_contig7.13652.1|Name=mRNA_P-fluviatile_contig7.13652.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1728bp|location=Sequence derived from alignment at P-fluviatile_contig7:3048166..3054650- (Porterinema fluviatile SAG_2381)
ATGAAAGGAGTAATCAGCTGTTTGGTTGTGTTGGCGAGGCACTACGAAGA
ATGCAGGGTGAAATATGATGGTGAGGGCAAAAGATTCCTCCTGGCGAAGG
GCGTGATACTCACGATCACCATGGGTATCGACACAGCGAACAATAGCGGG
ATTGGGTTTGTGGATAGACCAGCAAGTCGCAACCTTTTGAGGCCTGCTGA
GCGCAGGTGGAGACGTTCACCCAGCTGCTGCTCTGGATGGACAAGCAATC
GCTGCTCACCAAGTGCAAGATGAAAGGAGTAATCAGCTGTTTGGTTGTGT
TGGCGAGGCACTACGAAGAATGCAGGGTGAAATATGATGGTGAGGGCAAA
AGATTCCTCCTGGCGAAGGGCGTGATACTCACGATCACCATGGGTATCGA
CACAGCGAACAATAGCGGGATTGGGTTTGTGGATAGACCAGCAAGTCGCA
ACCTTTTGAGGCCTGCTGAGCGCAGGTGGAGACGTTCACCCAGCTGCTGC
TCTGGATGGACAAGCAATCGCTGCTCACCAAGTGCAAGGTGCATCTACGA
ATACGACGCGGAGCACACCATCGGGGGGAAAGGCTTCGTGGAGACCGACC
CTCCCAACTTCAAGGGTTCCTTTTACTCCGACACGAAGGGCATGGTGGAG
AACGTGCATCTACGAATACGACGCGGAGCACACCATCGGGGGGAAAGGCT
TCGTGGAGACCGACCCTCCCAACTTCAAGGGTTCCTTTTACTCCGACACG
AAGGGCATGGTGGAGAACATGCTGCGGGTGTTCCCCAACGTTTGTGTACT
GAGAGTAAGAATGCCCATCTCCGACGACCTCAGCCCCCGCAACTTCGTCA
CCAAGATCGTCAAGTACGAGAAGATGCTGCGGGTGTTCCCCAACGTTTGT
GTACTGAGAGTAAGAATGCCCATCTCCGACGACCTCAGCCCCCGCAACTT
CGTCACCAAGATCGTCAAGTACGAGAAGGTGGTGAACATCCCAAATTCAA
TGACCGTGCTCACGGACCTTCTGCCTGTGTCCCTGGCCATGTCGGAGAAA
AAGTTGGAGGTGGTGAACATCCCAAATTCAATGACCGTGCTCACGGACCT
TCTGCCTGTGTCCCTGGCCATGTCGGAGAAAAAGTTGGAGGGGGTCTACA
ATTTTTGCAACCCGGGAGCGATCAGCCACAACGAGATCTTGGACATGTAT
AAGAAATACATCGACCCTTCCTTCACTTACACGAACTTCACGGTGGAGGA
GCAGGACAAGATTTTGGTGGCAGGGCGATCCAACAACACCCTGGGGGTCT
ACAATTTTTGCAACCCGGGAGCGATCAGCCACAACGAGATCTTGGACATG
TATAAGAAATACATCGACCCTTCCTTCACTTACACGAACTTCACGGTGGA
GGAGCAGGACAAGATTTTGGTGGCAGGGCGATCCAACAACACCCTGGACG
TTTCGAAGATGGTGAATGCGGTGCCGGAGTTGGAGATCAAGGAGATCCAC
GAATCCATGGAAGGGGTGTTCCAGCGAATGAAGGAGAACCTGACGGCAGA
GGGCATCCTCCCGGATAACCTACCCAAGCGCTCATAGGACGTTTCGAAGA
TGGTGAATGCGGTGCCGGAGTTGGAGATCAAGGAGATCCACGAATCCATG
GAAGGGGTGTTCCAGCGAATGAAGGAGAACCTGACGGCAGAGGGCATCCT
CCCGGATAACCTACCCAAGCGCTCATAG
back to top