mRNA_P-fluviatile_contig7.13647.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13647.1
Unique NamemRNA_P-fluviatile_contig7.13647.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig7.13647.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 2.850e-30
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 2
Query:   53 MPTYSEMAKAAILALNERQGSSIPAIKKHVEATYPSLTFLPHQLRSALKKGVKTGVFVKVKASYKLSPEAKKPP 274
            MPTYSEMAK AILAL ER GSS+PAIKKH++ATYP+L FLPHQLR ALKKG +TG F+KVKASYK+SPEAKKPP
Sbjct:    1 MPTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKPP 74          
BLAST of mRNA_P-fluviatile_contig7.13647.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 8.580e-22
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 2
Query:   56 PTYSEMAKAAILALNERQGSSIPAIKKHVEATYPSLTFLPHQLRSALKKGVKTGVFVKVKASYKLSPEAKKP 271
            PTYS M   AI AL ER GSS+PA+KK + ATYPSL F PHQ+RSALKKG ++G F+KVK+SYKLSPEAKKP
Sbjct:    7 PTYSVMVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKP 78          
BLAST of mRNA_P-fluviatile_contig7.13647.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 3.180e-21
Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 2
Query:   47 SNMPTYSEMAKAAILALNERQGSSIPAIKKHVEATYPSLTFLPHQLRSALKKGVKTGVFVKVKASYKLSPEAKKPPPK 280
            S  PTY+ M   AI  L ER GSSI AIKK + ATYP+L F PHQ+RSALKKGV++G F+K+KASYKLS EAKKP PK
Sbjct:    3 STKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 80          
BLAST of mRNA_P-fluviatile_contig7.13647.1 vs. uniprot
Match: A0A7S2Y1F8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1F8_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.300e-20
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 2
Query:   53 MPTYSEMAKAAILALNERQGSSIPAIKKHVEATYPSLTFLPHQLRSALKKGVKTGVFVKVKASYKLSPEAKKP 271
            MP+Y +MAKAAILAL +R GSS+PAIK ++ A YPS+ FLPH LR+ALKK V+ G  +KVKASYKLS + KKP
Sbjct:    1 MPSYYDMAKAAILALKDRTGSSLPAIKAYITANYPSVKFLPHALRAALKKAVEAGKLIKVKASYKLSADEKKP 73          
BLAST of mRNA_P-fluviatile_contig7.13647.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.150e-19
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 2
Query:   56 PTYSEMAKAAILALNERQGSSIPAIKKHVEATYPSLTFLPHQLRSALKKGVKTGVFVKVKASYKLSPEAKKPPP 277
            PTY+ M   AI  L ER GSSI AIKK + ATYP+L F PHQ+R ALKKGV++G F+K+KASYKLSPEAKKP P
Sbjct:   99 PTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKPAP 172          
BLAST of mRNA_P-fluviatile_contig7.13647.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.850e-19
Identity = 46/63 (73.02%), Postives = 54/63 (85.71%), Query Frame = 2
Query:   83 AILALNERQGSSIPAIKKHVEATYPSLTFLPHQLRSALKKGVKTGVFVKVKASYKLSPEAKKP 271
            AI AL ER GSS+PA+KK + ATYPSL F PHQ+RSALKKG ++G F+KVK+SYKLSPEAKKP
Sbjct:    5 AIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKP 67          
BLAST of mRNA_P-fluviatile_contig7.13647.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 9.460e-19
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 2
Query:   83 AILALNERQGSSIPAIKKHVEATYPSLTFLPHQLRSALKKGVKTGVFVKVKASYKLSPEAKKPPPK 280
            AI +L ER GSSI AIKK + ATYP+L F PHQ+RSALKKGV+TG F+KVK+SYKLS EAKKP PK
Sbjct:    5 AIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKPVPK 70          
BLAST of mRNA_P-fluviatile_contig7.13647.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.430e-18
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 2
Query:   83 AILALNERQGSSIPAIKKHVEATYPSLTFLPHQLRSALKKGVKTGVFVKVKASYKLSPEAKKPPPK 280
            AI  L ER GSSI AIKK + ATYP+L F PHQ+RSALKKGV++G FVK+KASYKLS EAKKP PK
Sbjct:    5 AIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPAPK 70          
BLAST of mRNA_P-fluviatile_contig7.13647.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.280e-16
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 2
Query:   53 MPTYSEMAKAAILALNERQGSSIPAIKKHVEATYPSLTFLPHQLRSALKKGVKTGVFVKVKASYKLSPEAKKPPPKIKVAKK 298
            MPTY EM   A+ AL ER GSS+ AIKKH+ A+YPSLTF  H +RSALKKGV++G F+KVK SYKLS   ++P  K + A+K
Sbjct:    1 MPTYDEMTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEPAAKPQEAQK 82          
BLAST of mRNA_P-fluviatile_contig7.13647.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.230e-16
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 2
Query:   53 MPTYSEMAKAAILALNERQGSSIPAIKKHVEATYPSLTFLPHQLRSALKKGVKTGVFVKVKASYKLS 253
            MPTY EM   A+ AL ER GSS+ AIKKH+ A+YPSLTF  H LRSALKKGV++G F+KVK SYKLS
Sbjct:    1 MPTYDEMTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKFIKVKNSYKLS 67          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMF1_ECTSI2.850e-3081.08H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4I5_ECTSI8.580e-2270.83H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LQ80_ECTSI3.180e-2166.67Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A7S2Y1F8_9STRA3.300e-2065.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5KCU1_9PHAE1.150e-1967.57H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JHR9_9PHAE1.850e-1973.02H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQ75_ECTSI9.460e-1972.73H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KST0_9PHAE1.430e-1872.73H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
D8LJB8_ECTSI1.280e-1659.76H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIM8_9PHAE2.230e-1668.66H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:2970614..2974323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue1.7e-26
Seed eggNOG ortholog2880.D8LMF1
Preferred nameH1
KEGG koko:K11275
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHistone H1
Ec32 orthologEc-05_002510.1
Exons5
Model size1602
Cds size507
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817138.9992273-UTR-P-fluviatile_contig7:2970613..29706651622817138.9992273-UTR-P-fluviatile_contig7:2970613..2970665Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 2970614..2970665 +
1693571257.6955082-UTR-P-fluviatile_contig7:2970613..29706651693571257.6955082-UTR-P-fluviatile_contig7:2970613..2970665Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 2970614..2970665 +
1622817139.05054-UTR-P-fluviatile_contig7:2973268..29740481622817139.05054-UTR-P-fluviatile_contig7:2973268..2974048Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 2973269..2974048 +
1693571257.7540011-UTR-P-fluviatile_contig7:2973268..29740481693571257.7540011-UTR-P-fluviatile_contig7:2973268..2974048Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 2973269..2974048 +
1622817139.0603487-UTR-P-fluviatile_contig7:2974060..29743231622817139.0603487-UTR-P-fluviatile_contig7:2974060..2974323Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 2974061..2974323 +
1693571257.7645137-UTR-P-fluviatile_contig7:2974060..29743231693571257.7645137-UTR-P-fluviatile_contig7:2974060..2974323Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 2974061..2974323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817139.0097134-CDS-P-fluviatile_contig7:2970665..29706831622817139.0097134-CDS-P-fluviatile_contig7:2970665..2970683Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2970666..2970683 +
1693571257.7132773-CDS-P-fluviatile_contig7:2970665..29706831693571257.7132773-CDS-P-fluviatile_contig7:2970665..2970683Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2970666..2970683 +
1622817139.0195477-CDS-P-fluviatile_contig7:2970994..29711531622817139.0195477-CDS-P-fluviatile_contig7:2970994..2971153Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2970995..2971153 +
1693571257.7237363-CDS-P-fluviatile_contig7:2970994..29711531693571257.7237363-CDS-P-fluviatile_contig7:2970994..2971153Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2970995..2971153 +
1622817139.030773-CDS-P-fluviatile_contig7:2972735..29728071622817139.030773-CDS-P-fluviatile_contig7:2972735..2972807Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2972736..2972807 +
1693571257.7342017-CDS-P-fluviatile_contig7:2972735..29728071693571257.7342017-CDS-P-fluviatile_contig7:2972735..2972807Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2972736..2972807 +
1622817139.0403788-CDS-P-fluviatile_contig7:2973010..29732681622817139.0403788-CDS-P-fluviatile_contig7:2973010..2973268Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2973011..2973268 +
1693571257.7445204-CDS-P-fluviatile_contig7:2973010..29732681693571257.7445204-CDS-P-fluviatile_contig7:2973010..2973268Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2973011..2973268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13647.1prot_P-fluviatile_contig7.13647.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 2970666..2973268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13647.1

>prot_P-fluviatile_contig7.13647.1 ID=prot_P-fluviatile_contig7.13647.1|Name=mRNA_P-fluviatile_contig7.13647.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=169bp
MPTYSEMAKAAILALNERQGSSIPAIKKHVEATYPSLTFLPHQLRSALKK
GVKTGVFVKVKASYKLSPEAKKPPPKIKVAKKKVAKNPAVKKTVATKKTT
TKTKALKKPTASATNTKPTTTKKTMTKKKPAANKKTITKKKPTTSKKAIT
KKAAPKKPAPKKPAAKKA*
back to top

mRNA from alignment at P-fluviatile_contig7:2970614..2974323+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13647.1 ID=mRNA_P-fluviatile_contig7.13647.1|Name=mRNA_P-fluviatile_contig7.13647.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3710bp|location=Sequence derived from alignment at P-fluviatile_contig7:2970614..2974323+ (Porterinema fluviatile SAG_2381)
CCGGCACACACCTAACAAGCTCTCATCTGACTCATCCCGACGCCTCAGCA ACATGCCGACCTACAGCGAGGTGAGATTGACACCCTTGTCGGTGGAATAT CTTCGAGATATCATGATACCGTTGGAGTTTTCTTTCATTTTTCTTCTTCG CTCGCGATCTCCAAGTCAGGCCAGGCATTGTTTTTTGTGTTTCAATCTCC TTTTCGTCGATTTTTTCGGGCCGTGCTTTCCCTCTCCGGCCTCGCTAAGC GTAGCTACTGCGGTTCTTGCCGACATTGCTGCAGATAAACTCTTGCCATC ATCCTTGCCTGCTCTGGCAGTATCGAACACGCACACTTGTCCTCACTTGC CATGTACGGTCCTGTATGCGTGAAATCGCAGATGGCAAAAGCCGCGATTT TGGCCCTCAATGAACGCCAGGGATCATCCATCCCGGCTATCAAGAAACAT GTCGAGGCCACCTACCCCTCGCTGACTTTCCTCCCACACCAGCTTCGCAG TGCGCTCAAGAAGGGCGTCAAGACCGGCGTATTCGTTAAGGTGCGACATA CAGCAGTCGTGACTGCAATGTTTTCGGTTTGAATCCATCCGCACGGCAGA ATCGCGTGTGCGTTCCGTTTTTTCTTTCGTTCGCACAAACGCGGGTCTGG CTCACTTGTCAGCTCCTTTTGGTTTTTCTTCAGTTATGGCGAACCGCGTC CACTTTTTCCGTTCACTAGAAATGACCGACATCGACCGTGCCGACGGGCA GGAGTAAGACTTGTGGAGCCTTCCGTTCCTCATGTAACCGGATACTGCGT GTTGCACGAAGCTCGTCCCCCTCTACTTCCGTTGTTCTCGTTGAATATCG GGTTTGGACTTTGACCTCAAACATACGATCGGACCGCCTCATGACGAGGA GACAGCTTCCACCTCACGACCATCAACTCATCGCGCTTTCAAGTATTACA AAACTGCTGAAGCGTTGGTCACGCCATTTTGGATCAAACACCAGTGGTCT GTGACCTGCCGAAGCCTTCAATTTTCGCGATACGTGTTACGATAGGCGTT TCGCTCGCACGGGGCCAAGTTGGGTCCAACGTCATCGCCGAGCAAAAAAA TGAGGGAAAACGTTGATTGACACCCCGCGCCCACAGCTGACACTCGGCGA GGGTCGAATGTGAGGGGTCAAGCAGCAACCCTTAGCATTCGGCGATTTTT CAATCAGTGGTTGTATAACAAGTGCCTCGGGCGTCGACATCGTGCTACAA TCCATGACAACCGCTTACCCTGTAAATGGCCAGGGGAGATGCGCGCAGTG CCCGAGCAGAAATTCTGGGGGGCGGTCCGCCTTTCTCGCGCGTCATCGGC CGCACGAACGGGGCGCTTACTTTGCTCGACAGAACGTCTCTCGTGGAATG AGTTCATGTGCCGCAGCCTTCGCGGAGAGTGGGATGTATGGATTGAAGAT CTTGGTTGGTTGTTTCGCCCAGAACACATTGTTCATTTACATTCTGGCCC CATGGGGGCGGCAGTACAGCGACCACTCGCTTGCGCATGCGCACGCACGC GACAAGCCGTTGAGTGTCATTTCGTTGTACCGGCAAGGCTGCTGCTGGAG ACTGCCAGCTGTTCTCCACTCAGTCACAGCACATTCCAAACACCGGATCG TCCATTTTACTTGTGTCGTCCTGCGTGAACTGCATCCGGTGTACCTGTAG CTCAGGAACCACCATCCGAAATAGTCGCGAAACAAGAAACCAGCTTTCAA TCGTGCACACACCAGACGAAAGATCCGCAGTGATCTCAACCCAAATGTCT CATTCGCCCAGCCTGGTTTCCACCCTCTGATAGTGTCGTCGAACGTGATT TTTTTTAACGTCAGATGGATTGTTGTGGAGTGGCAACGAAGTCGCATAAC GTCATGAGTGGTTCACGAGCCAGGCTTTGAGATACATGACATTGGTTTGT ATTTGCACAAAGTTGCGTTCCTCATGACACGCAGTGATCGTGACGCACTT TTGGGGGGCACCGAGCTCAGTGTGCGTGGTGGATTCCTACTCTGACTCGT TCCAACTGTCAAATGCAGTTCGTTCTGCTTGTTCCTCGTGTAATTGGATC GCCGGTAATGTCTACTTTCCAGGTGAAGGCCTCTTACAAGCTGAGTCCTG AGGCGAAGAAGCCCCCACCCAAGATTAAGGTCGCCAAGAAGAAGGTAATC CAGAAGGTCACCAAGATGTGTTGCTCGTTCGCGACTCTGGTGTCTCTTGC GCTATATCTCACTCTGCGCCGACGGTGTCGCCGCAGCTGCCAGGCACACC ATTGTATTACTTGCTCTCGGTGTTGTTGATGACATGTGGTCGCTGACGAT CTCCTTTTCGGATAATCTTCGTGCTTTGCTTCTCTTTTTCATCAAAGGTG GCCAAGAACCCAGCGGTCAAGAAGACCGTGGCTACAAAGAAGACGACCAC AAAAACTAAGGCACTGAAGAAGCCGACCGCATCCGCCACGAACACGAAGC CGACCACCACCAAGAAGACCATGACAAAGAAAAAGCCCGCCGCCAACAAG AAGACCATAACAAAGAAGAAGCCCACCACTAGCAAGAAGGCGATAACAAA GAAGGCTGCTCCAAAGAAGCCTGCTCCCAAGAAGCCTGCTGCAAAAAAGG CCTGATTCCGACGTGAAATTGCCTGTGTTTGAACCTCTCTCTTCTCACCA CACGTGGGATGTTTGCAGGATGACTGCACGGGTCTGATTTGATTTGATAC GATTGAATCATGAGCTGGTCCTTTTATTCTGCTCTTGGGTGCTGTTGTCA TCGCGGCGCTTGTTTGCCTTTCACGATTGTGCATGTGAGGTTCTTCCGCC AATGATATCACGCTTTTATTTGCGATCGTTGATTTGGCTTGGAAAAAGGT TCAAGGTGGATGAGTGCACACAAGATCCATGGCGGTAGAGACAAAGCGAT GCAACGCACGCAATGCCGGTTTCTATTGGCCGCTTTTCGGCATGTCTTAG TGACTACCGTACTCGACGGGAGTTCATTCCGCACCTGGGCTGGTGGACGC GGATTTGTTCTTCATGTCTCGGAGGGATCGCGAAAGTGAACGGAATCGAG AGGTCTGCAGTCTCGAAGGGGAAGGAATGAGGTTGGAGGGCAGTGCTGTC AGAGCATCCAACCACGTAAGATAGATTTTTATGGCGAACAAAAGAGGAAG GGAGGAGGAGTCTGTGACGAAGATGGCGCCCGGGTATGTAGGTTGCCCTG AACCTGTTGTTGAGTTGACGCAATTGCCGTTAATAGTCTACCTCGGCTGT GGTTCTTGAGTTATCAACCTTCAGCTCCTTCTGTTTCAGGAAGTATACTT ATGTATCCACGTTTTGGACTGATTTGCTTTGGTTGGATACAAGAATTGCT TGCCGGGCGGGGGAGTGCCATTTTTTTTGTTGGTTTCCAAACTGCTGCTC GATCGATCTTCCGGTCTGGGCTGTGGGTTTTAAGGGCAACAGCTGCGATC GAATTTTTTTTTTGCAGGCGTGCACATCGTGCACAAAGTACTACGTGTGC GCCTTGAACGTTCTTTCAGTTCATCTTGCTCTTGCGACATCTCCATTTGT GACGTGTACATAAAGTATGCAGGAGCGTGCCGACAGGGATTATTCTATTA TGATGTATTTGAAAGTCAAAACTTGTACGTAGACGTGAAACGTGTACATG TCGTTTGAAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig7:2970614..2974323+

>mRNA_P-fluviatile_contig7.13647.1 ID=mRNA_P-fluviatile_contig7.13647.1|Name=mRNA_P-fluviatile_contig7.13647.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1014bp|location=Sequence derived from alignment at P-fluviatile_contig7:2970614..2974323+ (Porterinema fluviatile SAG_2381)
ATGCCGACCTACAGCGAGATGCCGACCTACAGCGAGATGGCAAAAGCCGC
GATTTTGGCCCTCAATGAACGCCAGGGATCATCCATCCCGGCTATCAAGA
AACATGTCGAGGCCACCTACCCCTCGCTGACTTTCCTCCCACACCAGCTT
CGCAGTGCGCTCAAGAAGGGCGTCAAGACCGGCGTATTCGTTAAGATGGC
AAAAGCCGCGATTTTGGCCCTCAATGAACGCCAGGGATCATCCATCCCGG
CTATCAAGAAACATGTCGAGGCCACCTACCCCTCGCTGACTTTCCTCCCA
CACCAGCTTCGCAGTGCGCTCAAGAAGGGCGTCAAGACCGGCGTATTCGT
TAAGGTGAAGGCCTCTTACAAGCTGAGTCCTGAGGCGAAGAAGCCCCCAC
CCAAGATTAAGGTCGCCAAGAAGAAGGTGAAGGCCTCTTACAAGCTGAGT
CCTGAGGCGAAGAAGCCCCCACCCAAGATTAAGGTCGCCAAGAAGAAGGT
GGCCAAGAACCCAGCGGTCAAGAAGACCGTGGCTACAAAGAAGACGACCA
CAAAAACTAAGGCACTGAAGAAGCCGACCGCATCCGCCACGAACACGAAG
CCGACCACCACCAAGAAGACCATGACAAAGAAAAAGCCCGCCGCCAACAA
GAAGACCATAACAAAGAAGAAGCCCACCACTAGCAAGAAGGCGATAACAA
AGAAGGCTGCTCCAAAGAAGCCTGCTCCCAAGAAGCCTGCTGCAAAAAAG
GCCTGAGTGGCCAAGAACCCAGCGGTCAAGAAGACCGTGGCTACAAAGAA
GACGACCACAAAAACTAAGGCACTGAAGAAGCCGACCGCATCCGCCACGA
ACACGAAGCCGACCACCACCAAGAAGACCATGACAAAGAAAAAGCCCGCC
GCCAACAAGAAGACCATAACAAAGAAGAAGCCCACCACTAGCAAGAAGGC
GATAACAAAGAAGGCTGCTCCAAAGAAGCCTGCTCCCAAGAAGCCTGCTG
CAAAAAAGGCCTGA
back to top