mRNA_P-fluviatile_contig7.13640.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13640.1
Unique NamemRNA_P-fluviatile_contig7.13640.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:2912890..2914665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size514
Cds size510
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13640.1prot_P-fluviatile_contig7.13640.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 2912892..2914665 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817109.7487733-CDS-P-fluviatile_contig7:2912891..29132651622817109.7487733-CDS-P-fluviatile_contig7:2912891..2913265Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2912892..2913265 -
1693571156.023281-CDS-P-fluviatile_contig7:2912891..29132651693571156.023281-CDS-P-fluviatile_contig7:2912891..2913265Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2912892..2913265 -
1622817109.7604148-CDS-P-fluviatile_contig7:2913846..29139011622817109.7604148-CDS-P-fluviatile_contig7:2913846..2913901Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2913847..2913901 -
1693571156.0361586-CDS-P-fluviatile_contig7:2913846..29139011693571156.0361586-CDS-P-fluviatile_contig7:2913846..2913901Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2913847..2913901 -
1622817109.770411-CDS-P-fluviatile_contig7:2914584..29146651622817109.770411-CDS-P-fluviatile_contig7:2914584..2914665Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2914585..2914665 -
1693571156.0572004-CDS-P-fluviatile_contig7:2914584..29146651693571156.0572004-CDS-P-fluviatile_contig7:2914584..2914665Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2914585..2914665 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13640.1

>prot_P-fluviatile_contig7.13640.1 ID=prot_P-fluviatile_contig7.13640.1|Name=mRNA_P-fluviatile_contig7.13640.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=170bp
LNSDSEGEDAAPFMDASLMAGWHPDAAAIDLGSDSGGEDYEAAGGVLNRM
ALGADDKSGGNSGGDGDGDGAGPSDVRSESGSSSSSRSSNAHVGAGWRNA
VVGPPLPPLSDGDTGLGAGAVHPLAGEQHAAPAAAAAPTPEGLVEIDHGH
RHGRDAGGGQHELQLAGLAG
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mRNA from alignment at P-fluviatile_contig7:2912890..2914665-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13640.1 ID=mRNA_P-fluviatile_contig7.13640.1|Name=mRNA_P-fluviatile_contig7.13640.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1776bp|location=Sequence derived from alignment at P-fluviatile_contig7:2912890..2914665- (Porterinema fluviatile SAG_2381)
CTAAATAGCGACAGCGAAGGGGAAGATGCTGCTCCCTTCATGGATGCGTC
ACTGATGGCTGGCTGGCATCCAGACGCGGCGGTGGGTGCATCCGCGTTGC
AGGTGAGCTTGTGCCTGCATGGAATCTGGTGGTGGTACTTATGACCCTTG
CGGTACGTGTCACGAAGACCAGAGAGGGGGAACGAACGTGGCTGCCCGCT
AATATGCACACCACTTTCTTTCTCTCCCTCGCTTGCAGCAAACATTCATT
GCACACAGCAGCGGTTTGACGGCGGTTTATCAAGTATCCATTTAACGGTA
CGTTAGGTAGATGCATGTCCGGTGTTTCGGCGCCCTTCGCCGAGGAGCTC
TCCTCAACGTGACCGATGAACAGTCAGTGCGGAGATTGGCGCCACTTAGC
AACAAAGGCCTCTCCTCGTATGTTGTTCTGACAGAAGAGTGTTCGGTGAT
CCGTTTATCTGCACAGCGCTGCGTCCTGCCTGGTGCTTTTAGCCTTGGGG
AGGTTCAACTTCACGAATTGGGCAGGCAATTCAACTGTCGAAAGCTGCAT
CAGTCTACAGACATTACAAAACACCCTGGTAGAAACGTTGCCGCTCAAAA
AGCAGCACTGATATCCTCGTTCATTCCGTACACCTTCACATCGTATTTGT
ACGCTCCCGTCCAAACTGGTGATGGCGCACCCAGGCAAGAGCCAAACGTT
GCCGTAGGATCACCTCCCCTCACCCCTGCGTGTTTTTGCTGGGATACCGC
GTGCTGTTGGGCAGGCCATCGATCTGGGAAGCGACAGTGGGGGCGAGGAC
TACGAAGCAGCGGGTGGAGGTAGGCGGATGACGAACGTATGGTTAGTAAG
AGTACCTCAGTGCAACCCTTCTGAGGCCGCCAAGTTTGAAGCTTCTGCTT
ATGGGCGAAATGTGCTGTTTTGGCGAAGTCGGATGTATTTGGTGAGGTTT
CCAGGCGCGAAAGCGCTTGGTAACGCACGCAACAAGTTGATCCAAAACGT
CTCCGGTATTGTACGACTCGGCCACGAGAATGAGTGCTCCAATTTTTACG
TGCGCAAGAGGTCCAAACGATTCACGCGCACGATTTGGTGGATCTCTCGA
AGTGTGGAAGGGAGTGCAATATCGGTAGGTGCTGCAAAAGGACAACTGCC
GACATGATGCGAGACGTTCGATCCCAGCGGAGAGTATCGCCAATGGCAGT
TGAATATTGCTGTGAAAAGGTTTCGAACTGAATTTTGCTAGGCGAAGGCA
TGTCAATCGCCCTGTGTCATATACTACACCAGGCCGGAATGCCGCATTCG
GTCTTGTGCTTCTCCCCCGGTACCTAAACCTTGGCGGATCCGCGGTCTTT
TGCCTGCATTCCGTTCTCGACGTGTTTAAACCATGTGGTTCATCTTCAAG
TTCTGAATAGGATGGCACTTGGGGCCGATGATAAAAGCGGCGGCAACAGC
GGTGGTGACGGTGACGGTGACGGCGCAGGTCCATCAGACGTTCGATCGGA
GAGCGGCAGCAGCAGCAGTAGTAGGAGCAGTAACGCTCACGTCGGCGCTG
GCTGGCGCAATGCGGTCGTTGGCCCCCCGCTTCCACCATTGTCCGATGGC
GATACTGGTCTGGGTGCTGGCGCGGTTCACCCCCTCGCTGGCGAACAGCA
TGCAGCTCCAGCTGCAGCTGCGGCGCCAACACCGGAAGGATTAGTCGAAA
TTGACCACGGTCATCGCCATGGACGAGATGCAGGGGGAGGCCAACATGAG
CTGCAGCTGGCGGGACTGGCGGGGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:2912890..2914665-

>mRNA_P-fluviatile_contig7.13640.1 ID=mRNA_P-fluviatile_contig7.13640.1|Name=mRNA_P-fluviatile_contig7.13640.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1020bp|location=Sequence derived from alignment at P-fluviatile_contig7:2912890..2914665- (Porterinema fluviatile SAG_2381)
CTAAATAGCGACAGCGAAGGGGAAGATGCTGCTCCCTTCATGGATGCGTC
ACTGATGGCTGGCTGGCATCCAGACGCGGCGCTAAATAGCGACAGCGAAG
GGGAAGATGCTGCTCCCTTCATGGATGCGTCACTGATGGCTGGCTGGCAT
CCAGACGCGGCGGCCATCGATCTGGGAAGCGACAGTGGGGGCGAGGACTA
CGAAGCAGCGGGTGGAGGCCATCGATCTGGGAAGCGACAGTGGGGGCGAG
GACTACGAAGCAGCGGGTGGAGTTCTGAATAGGATGGCACTTGGGGCCGA
TGATAAAAGCGGCGGCAACAGCGGTGGTGACGGTGACGGTGACGGCGCAG
GTCCATCAGACGTTCGATCGGAGAGCGGCAGCAGCAGCAGTAGTAGGAGC
AGTAACGCTCACGTCGGCGCTGGCTGGCGCAATGCGGTCGTTGGCCCCCC
GCTTCCACCATTGTCCGATGGCGATACTGGTCTGGGTGCTGGCGCGGTTC
ACCCCCTCGCTGGCGAACAGCATGCAGCTCCAGCTGCAGCTGCGGCGCCA
ACACCGGAAGGATTAGTCGAAATTGACCACGGTCATCGCCATGGACGAGA
TGCAGGGGGAGGCCAACATGAGCTGCAGCTGGCGGGACTGGCGGGGTTCT
GAATAGGATGGCACTTGGGGCCGATGATAAAAGCGGCGGCAACAGCGGTG
GTGACGGTGACGGTGACGGCGCAGGTCCATCAGACGTTCGATCGGAGAGC
GGCAGCAGCAGCAGTAGTAGGAGCAGTAACGCTCACGTCGGCGCTGGCTG
GCGCAATGCGGTCGTTGGCCCCCCGCTTCCACCATTGTCCGATGGCGATA
CTGGTCTGGGTGCTGGCGCGGTTCACCCCCTCGCTGGCGAACAGCATGCA
GCTCCAGCTGCAGCTGCGGCGCCAACACCGGAAGGATTAGTCGAAATTGA
CCACGGTCATCGCCATGGACGAGATGCAGGGGGAGGCCAACATGAGCTGC
AGCTGGCGGGACTGGCGGGG
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