mRNA_P-fluviatile_contig7.13625.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13625.1
Unique NamemRNA_P-fluviatile_contig7.13625.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:2749916..2751510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_002580.1
Exons2
Model size482
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13625.1prot_P-fluviatile_contig7.13625.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 2750138..2751510 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817136.1857173-UTR-P-fluviatile_contig7:2749915..27501371622817136.1857173-UTR-P-fluviatile_contig7:2749915..2750137Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 2749916..2750137 +
1693571247.6492233-UTR-P-fluviatile_contig7:2749915..27501371693571247.6492233-UTR-P-fluviatile_contig7:2749915..2750137Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 2749916..2750137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817136.1960366-CDS-P-fluviatile_contig7:2750137..27502241622817136.1960366-CDS-P-fluviatile_contig7:2750137..2750224Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2750138..2750224 +
1693571247.6591814-CDS-P-fluviatile_contig7:2750137..27502241693571247.6591814-CDS-P-fluviatile_contig7:2750137..2750224Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2750138..2750224 +
1622817136.2098086-CDS-P-fluviatile_contig7:2751339..27515101622817136.2098086-CDS-P-fluviatile_contig7:2751339..2751510Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2751340..2751510 +
1693571248.9507875-CDS-P-fluviatile_contig7:2751339..27515101693571248.9507875-CDS-P-fluviatile_contig7:2751339..2751510Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2751340..2751510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13625.1

>prot_P-fluviatile_contig7.13625.1 ID=prot_P-fluviatile_contig7.13625.1|Name=mRNA_P-fluviatile_contig7.13625.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=86bp
MDMVHDLLGKAEPVITGSMVIDGEASRGMAERHEYSHARKDLPLTFRPGS
NIGDGCERETRSRACKDQGGKARHQQHEDNDENEQE
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mRNA from alignment at P-fluviatile_contig7:2749916..2751510+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13625.1 ID=mRNA_P-fluviatile_contig7.13625.1|Name=mRNA_P-fluviatile_contig7.13625.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1595bp|location=Sequence derived from alignment at P-fluviatile_contig7:2749916..2751510+ (Porterinema fluviatile SAG_2381)
TCATAGTCTATGCATATGATTCGACGTGGCATTAGTCTATCTATACCGTG
GCGAACTTGGAAACCGGAAACTGAGGAGGGAAGCGAGACGTTTCCGCCAT
ACAAAATTGGTGGGGGGTAGGGCATTAAACAAAGGGAATTAATTGCCTGT
TGTTGGGCAGCCTTTTCATTCGGGTGGGAACCGCGGTCGTCTCGAGCCAC
GCTCCACAGCACGAGGGGATTGATGGATATGGTACACGATCTCCTCGGGA
AAGCCGAGCCTGTGATCACAGGCAGTATGGTTATCGATGGCGAGGCTTCA
CGTGGGATGGTGAGTAATGTTTCAACGCTTTTTAAAAGCAAAGCTGTCGT
TCAACTGTCCATGTAGACCACGATACGATTGTTCTGACATGCAGCTCATG
TTTGGCTAGGAATGGAACACCCGTCTGCATGGGGCCTGACCGACAGACAG
CGGACTGGTTTCCATACAACGGGACAGAAAGTCATCAGTCATCAGCTAGC
CATGACTCCTCCTTGACATGAAGTAGGTTACTAGAGCAAGTTCAACGGCC
GCCTCAAATCGAGTCCGAGCAACTACTGTTCTGAAAACAACTGAGTGAAG
GCTAGCACCTCAATCAAACATCTGTTCAACATAGTTCCCTTCGTTCTCGT
CCTCGATGCAGTCACTAGTCTATGTCCCCGGCCCCTGTTTCTGCCCGAAA
AGAGAAACACGTGCGGGGAACGGAAAACACTAGAAACGAATACCCCTCTC
GTGAAATCCCCCCCGAATGGACGTGTTCATTACCAAGGTGGAAAAAGACT
TGCGTCCTCGACAGGATACGTGTCCGTTTGAAGGGTAGTGTGCACATCAC
CCCCCCCCATTTTTTTTAGCCTTCGCCTTGGTCGCCAAGCAAGAAGACTC
ATTCTGGACATCCGGAACCCGACCGGCTGGCGGCGAGTAGACAACCCTTT
TTTCCCCTTCAATCTTCCTCCGCTTCGTCTTATCAGAAGTTCCGAGAGTT
CGGTCATCTGCTCTTTGTTCGATCTTCCTCTGCGCAACACACTTTTCGTT
TCAATCGTGGACCCGGAAGAAAAAGTGCGCAGTGGCATAGTCAAACCTGG
GCATTGCCCTCACAGAGCGGGCATCTGTTCGCTGACGCCATCGTGGAAGA
GTGTTCATACCTGGACGGACGGATGGGATACACATCCCTTATAAGGGTAG
TACGCACACCAACATATGTATTTTCTTGAGAGGGACAAGGACTACGATAG
CTTCTGCATTTCGAATTGAGGTACGGTGCTGTAAGCTGCAAGTTACACCA
AAAAGAGATTTGTTGAGCGCCGTTTTGACATTTGAAACACAAAAAGTCTG
ACAACAGCAACAAGACAGTGGATGTCTCCGACCGGGGCCACGTTGTCGTC
TGAAACAATCCTTGGACCTTTCAGGCTGAGCGGCATGAGTATTCACACGC
GAGGAAGGATTTGCCGCTCACATTTAGGCCAGGGAGCAACATAGGAGACG
GCTGTGAGAGAGAAACAAGGAGTCGAGCGTGCAAGGATCAAGGTGGGAAG
GCGAGGCACCAGCAGCACGAGGACAACGATGAAAATGAACAGGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:2749916..2751510+

>mRNA_P-fluviatile_contig7.13625.1 ID=mRNA_P-fluviatile_contig7.13625.1|Name=mRNA_P-fluviatile_contig7.13625.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=516bp|location=Sequence derived from alignment at P-fluviatile_contig7:2749916..2751510+ (Porterinema fluviatile SAG_2381)
ATGGATATGGTACACGATCTCCTCGGGAAAGCCGAGCCTGTGATCACAGG
CAGTATGGTTATCGATGGCGAGGCTTCACGTGGGATGATGGATATGGTAC
ACGATCTCCTCGGGAAAGCCGAGCCTGTGATCACAGGCAGTATGGTTATC
GATGGCGAGGCTTCACGTGGGATGGCTGAGCGGCATGAGTATTCACACGC
GAGGAAGGATTTGCCGCTCACATTTAGGCCAGGGAGCAACATAGGAGACG
GCTGTGAGAGAGAAACAAGGAGTCGAGCGTGCAAGGATCAAGGTGGGAAG
GCGAGGCACCAGCAGCACGAGGACAACGATGAAAATGAACAGGAGGCTGA
GCGGCATGAGTATTCACACGCGAGGAAGGATTTGCCGCTCACATTTAGGC
CAGGGAGCAACATAGGAGACGGCTGTGAGAGAGAAACAAGGAGTCGAGCG
TGCAAGGATCAAGGTGGGAAGGCGAGGCACCAGCAGCACGAGGACAACGA
TGAAAATGAACAGGAG
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