mRNA_P-fluviatile_contig7.13591.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13591.1
Unique NamemRNA_P-fluviatile_contig7.13591.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig7.13591.1 vs. uniprot
Match: A0A6H5K321_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K321_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.840e-29
Identity = 80/143 (55.94%), Postives = 89/143 (62.24%), Query Frame = 1 
Query:    4 RSVVAAEGDAFDAGQARAALYRREAGV----HDXXXXXXXXXXXXXXXXXPCGLSLATCSLMGGRALSQTFKLCANGQQPTGPQASAVGEEDGN-EEGEKAENAILVDVGGEEGDGCSP-AGGQHDGVEDVLSEQVTTGSTSP 414
            RSV  A+ D F+AG ARAA YR EAG     H+                   GLS AT SLMGGRALSQ F  C + +QPT    SAVGEE GN EE  K E+ +LV+VGGE+GDGCSP AGGQHDGV D LS QVT GS SP
Sbjct:   50 RSVGVADVDRFNAGLARAAQYRSEAGCDHDYHEADSDSSPVDVDDQRQQQAVGLSWATRSLMGGRALSQAFTACGSDRQPTWQHPSAVGEEGGNTEEDRKVEDPMLVEVGGEDGDGCSPDAGGQHDGVLDALSGQVTAGSMSP 192
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BLAST of mRNA_P-fluviatile_contig7.13591.1 vs. uniprot
Match: A0A6H5JRU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU1_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.350e-25
Identity = 79/143 (55.24%), Postives = 87/143 (60.84%), Query Frame = 1 
Query:    4 RSVVAAEGDAFDAGQARAALYRREAGV----HDXXXXXXXXXXXXXXXXXPCGLSLATCSLMGGRALSQTFKLCANGQQPTGPQASAVGEEDGN-EEGEKAENAILVDVGGEEGDGCSP-AGGQHDGVEDVLSEQVTTGSTSP 414
            RSV  A+ D F+AG ARAA YR EAG     H                    GLS AT SLMGGRALSQ F  C + +QPT    SAVGEE GN EE  K E+ +LV+VGGE+GDGCSP AG QHDGV D LS QVT GS SP
Sbjct:   50 RSVGVADVDRFNAGLARAAQYRSEAGCDHDYHGEDSDSSPVDVDDQRQQQAVGLSWATRSLMGGRALSQAFTACGSDRQPTWQHPSAVGEEGGNTEEDRKVEDPMLVEVGGEDGDGCSPDAGEQHDGVLDALSGQVTAGSMSP 192
[Close]
BLAST of mRNA_P-fluviatile_contig7.13591.1 vs. uniprot
Match: A0A6H5JDY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDY9_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.290e-7
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = 3 
Query:  150 FVLGYLQPDGRARFVSDLQALCERATTYGAASFCGR*RRWQRGG*KSGE 296
            FVLG  QPDGRAR VS L  L ER+TTY AA FCGR RRWQ  G + G+
Sbjct:   26 FVLGCPQPDGRARSVSGLHGLWERSTTYVAAPFCGRRRRWQHRGGEDGD 74
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K321_9PHAE1.840e-2955.94Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRU1_9PHAE1.350e-2555.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDY9_9PHAE2.290e-765.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:2120176..2122517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1064
Cds size741
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13591.1prot_P-fluviatile_contig7.13591.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 2120299..2122317 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817109.211409-UTR-P-fluviatile_contig7:2120175..21202981622817109.211409-UTR-P-fluviatile_contig7:2120175..2120298Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 2120176..2120298 +
1693571154.318453-UTR-P-fluviatile_contig7:2120175..21202981693571154.318453-UTR-P-fluviatile_contig7:2120175..2120298Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 2120176..2120298 +
1622817109.2569127-UTR-P-fluviatile_contig7:2122317..21225171622817109.2569127-UTR-P-fluviatile_contig7:2122317..2122517Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 2122318..2122517 +
1693571154.579014-UTR-P-fluviatile_contig7:2122317..21225171693571154.579014-UTR-P-fluviatile_contig7:2122317..2122517Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 2122318..2122517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817109.2236705-CDS-P-fluviatile_contig7:2120298..21204511622817109.2236705-CDS-P-fluviatile_contig7:2120298..2120451Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2120299..2120451 +
1693571154.3264437-CDS-P-fluviatile_contig7:2120298..21204511693571154.3264437-CDS-P-fluviatile_contig7:2120298..2120451Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2120299..2120451 +
1622817109.2339838-CDS-P-fluviatile_contig7:2121001..21211151622817109.2339838-CDS-P-fluviatile_contig7:2121001..2121115Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2121002..2121115 +
1693571154.3354733-CDS-P-fluviatile_contig7:2121001..21211151693571154.3354733-CDS-P-fluviatile_contig7:2121001..2121115Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2121002..2121115 +
1622817109.24667-CDS-P-fluviatile_contig7:2121843..21223171622817109.24667-CDS-P-fluviatile_contig7:2121843..2122317Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2121844..2122317 +
1693571154.5619323-CDS-P-fluviatile_contig7:2121843..21223171693571154.5619323-CDS-P-fluviatile_contig7:2121843..2122317Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2121844..2122317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13591.1

>prot_P-fluviatile_contig7.13591.1 ID=prot_P-fluviatile_contig7.13591.1|Name=mRNA_P-fluviatile_contig7.13591.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=247bp
MDEEPQPCGLSLATCSLMGGRALSQTFKLCANGQQPTGPQASAVGEEDGN
EEGEKAENAILVDVGGEEGDGCSPAGGQHDGVEDVLSEQVTTGSTSPPSA
FPAPRARGCTPGSCVYSGGGNSATTPLPAVIVHYAWFYANPARKAQRWNP
SNDIPTCSVGSAVGSGAPPRPYRPTASTTSGSAPTKGPVVGTSILHPGLV
IRQLPRGESSHGEAYVPPLASPEVEGGGHAGGRPEECVEIWSIARG*
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mRNA from alignment at P-fluviatile_contig7:2120176..2122517+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13591.1 ID=mRNA_P-fluviatile_contig7.13591.1|Name=mRNA_P-fluviatile_contig7.13591.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2342bp|location=Sequence derived from alignment at P-fluviatile_contig7:2120176..2122517+ (Porterinema fluviatile SAG_2381)
ATCCGGAGTGTCGTTGCCGCGGAAGGTGACGCCTTTGACGCAGGGCAAGC
ACGAGCGGCGCTCTATCGGCGGGAGGCTGGTGTTCATGATCATGATTCAG
ACGACTCCGGCAGCGATGTTGATATGGATGAAGAGCCGCAGCCGTGTGGT
TTGTCCTTGGCTACCTGCAGCCTGATGGGCGGGCGCGCTTTGTCTCAGAC
CTTCAAGCTTTGTGCGAACGGGCAACAACCTACGGGGCCGCAAGCTTCTG
CGGTCGGTGAAGAAGATGGCAACGAGGTACGCTGTTTGATTTTTCGCGGG
TCTCGCCGCCTCGCTGGGTGCTGTGTGCGACAGCAAGAGCTGATTGTTGT
ATTGGTGAACCGTACGATACGAAAGCTTGCGCTGCTGCGTAGCCCTTATT
GGACAAATACTGCGGCATCGCCACTTCTTTCGGGATTTTATATACCGCTC
CATGATAAGGTAGTTTTTTCATTCAGTACGAGTGTCCTCGTGGAACAAAA
GTGTTGTGTGTGTGCACGCGCCAACAACCCACAGACGGACGCTGTCGCCT
GCGCTTGGCAATCCCCATCATCGACCCTCGCGTATGTCCCTCTTTCCCCA
CACTCCAAACAACATAGTTAAACATTGGCTAGGTTCCTGAAATTAAACTT
GTTCATACACAGCATACTTTGGCAAGCAGATGCTGTAGCTGTTGGTTTGT
TGTTCGTGCGAATGCTTTGTTTTTTGGAAAGCTCGACAACATGTGCTGGA
CATCCGCACCCACCGTGTTGTAACACCTCTCCCTTGCACGGACGCGACCG
CGGTTGTGTTTTGTGGTATCGTGCAGGAGGGTGAAAAAGCGGAGAATGCT
ATACTTGTAGACGTGGGTGGAGAGGAGGGCGATGGATGTTCTCCAGCGGG
CGGACAGCATGACGGCGTGGAGGATGTACTTTCAGAGCAGGTGTGAAGAC
GGCAATACGTCAGAGTTCGTAATCCCCGCTTGCAGAAACCCCCAGCTCGT
TTTTTGGCGGATAAAAACGCGCGGGTAGGACTGGCGCTATCGTCGCGGCG
TCGCTTGCCCATTCCCCCTGGAAACATGTCGCCACGTTCCGTGACGCGAT
GAAAAAACTGTGAGACGCTACAATGCGTTTCTCATTATCAACGGGCACGA
TACTCCGCCTGTTGCCACAACACGTTACCCGCGGCATGCGGACACGAGTG
ACAACCTAGACCTGCATCAAATATCGTCGGCTATTTCTCCCGGAGGAAAG
TCGATCAATATGCACTTCAACTCTAGGGAGGATGATCACTGAGTTTGAAA
CGGCATAGCTCGACTCATGTTGTTGTTTGCTGGTGGTGTTGTTCAAGGCG
ATGCTGCTGCTGCTGCAGCAGCTGAGTTCTGTTGTCGATGTTGGTGGTGG
TGGTGGTGGCGGCGGTGTTTTGTTTCGGATTAATGGTGGACACGATGAAA
TCGCCCATCTGTTGCCGGCGTCCCTGTAGCGCAAACGCCGGAATAGCTAA
AAAGACATGTGTTGGGGGGCAGATGGGCCGCAAATCAAAGTCAAGAGCAA
TTGCCGTGAAACCTACACGGGAGGCGAACATTGGAGGCCGTTTTCTCGCC
CAAGGGATCACCATGACATGTTGCCTTCCGTTGCCTCTTCCCCTTCCTTG
TACTCTGAACGCCTCTAGGTGACGACTGGCTCCACGTCTCCCCCCTCCGC
CTTCCCTGCTCCAAGGGCGAGGGGCTGTACCCCCGGCTCTTGCGTCTACA
GTGGCGGCGGCAACAGCGCAACCACCCCCCTACCGGCCGTCATCGTCCAC
TACGCCTGGTTCTACGCGAACCCCGCTCGGAAGGCCCAGCGGTGGAACCC
CAGCAACGACATCCCCACCTGTTCCGTCGGCAGTGCCGTCGGCAGCGGCG
CGCCCCCGCGCCCTTACAGGCCGACGGCTTCCACCACGTCTGGTTCAGCC
CCCACCAAGGGCCCAGTAGTGGGAACGAGCATCCTGCATCCCGGACTCGT
GATACGTCAGCTTCCGCGGGGAGAGAGTTCGCACGGAGAAGCCTATGTTC
CACCTCTGGCCTCTCCCGAAGTTGAAGGAGGAGGCCACGCGGGAGGCCGG
CCCGAGGAATGCGTTGAAATATGGTCCATTGCCCGAGGATGAGCTTCGAC
AAATTTCGAATGCAAAGAAAGAGGACTTGGTCCACGCGCTGACGGCTCGC
ATGGAATGGGCCGCGAGTCTCGATCAAGATCCCGAGTGGATGAAAATCCC
CCGGCATCACGCCGGAAAGGAAGAAGGCGCAGCACGTCAACAGAGTTGCC
GCGGCGACGAGAAAAGCTCGGGGTAGTGCACCAAAGGGCGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:2120176..2122517+

>mRNA_P-fluviatile_contig7.13591.1 ID=mRNA_P-fluviatile_contig7.13591.1|Name=mRNA_P-fluviatile_contig7.13591.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1482bp|location=Sequence derived from alignment at P-fluviatile_contig7:2120176..2122517+ (Porterinema fluviatile SAG_2381)
ATGGATGAAGAGCCGCAGCCGTGTGGTTTGTCCTTGGCTACCTGCAGCCT
GATGGGCGGGCGCGCTTTGTCTCAGACCTTCAAGCTTTGTGCGAACGGGC
AACAACCTACGGGGCCGCAAGCTTCTGCGGTCGGTGAAGAAGATGGCAAC
GAGATGGATGAAGAGCCGCAGCCGTGTGGTTTGTCCTTGGCTACCTGCAG
CCTGATGGGCGGGCGCGCTTTGTCTCAGACCTTCAAGCTTTGTGCGAACG
GGCAACAACCTACGGGGCCGCAAGCTTCTGCGGTCGGTGAAGAAGATGGC
AACGAGGAGGGTGAAAAAGCGGAGAATGCTATACTTGTAGACGTGGGTGG
AGAGGAGGGCGATGGATGTTCTCCAGCGGGCGGACAGCATGACGGCGTGG
AGGATGTACTTTCAGAGCAGGAGGGTGAAAAAGCGGAGAATGCTATACTT
GTAGACGTGGGTGGAGAGGAGGGCGATGGATGTTCTCCAGCGGGCGGACA
GCATGACGGCGTGGAGGATGTACTTTCAGAGCAGGTGACGACTGGCTCCA
CGTCTCCCCCCTCCGCCTTCCCTGCTCCAAGGGCGAGGGGCTGTACCCCC
GGCTCTTGCGTCTACAGTGGCGGCGGCAACAGCGCAACCACCCCCCTACC
GGCCGTCATCGTCCACTACGCCTGGTTCTACGCGAACCCCGCTCGGAAGG
CCCAGCGGTGGAACCCCAGCAACGACATCCCCACCTGTTCCGTCGGCAGT
GCCGTCGGCAGCGGCGCGCCCCCGCGCCCTTACAGGCCGACGGCTTCCAC
CACGTCTGGTTCAGCCCCCACCAAGGGCCCAGTAGTGGGAACGAGCATCC
TGCATCCCGGACTCGTGATACGTCAGCTTCCGCGGGGAGAGAGTTCGCAC
GGAGAAGCCTATGTTCCACCTCTGGCCTCTCCCGAAGTTGAAGGAGGAGG
CCACGCGGGAGGCCGGCCCGAGGAATGCGTTGAAATATGGTCCATTGCCC
GAGGATGAGTGACGACTGGCTCCACGTCTCCCCCCTCCGCCTTCCCTGCT
CCAAGGGCGAGGGGCTGTACCCCCGGCTCTTGCGTCTACAGTGGCGGCGG
CAACAGCGCAACCACCCCCCTACCGGCCGTCATCGTCCACTACGCCTGGT
TCTACGCGAACCCCGCTCGGAAGGCCCAGCGGTGGAACCCCAGCAACGAC
ATCCCCACCTGTTCCGTCGGCAGTGCCGTCGGCAGCGGCGCGCCCCCGCG
CCCTTACAGGCCGACGGCTTCCACCACGTCTGGTTCAGCCCCCACCAAGG
GCCCAGTAGTGGGAACGAGCATCCTGCATCCCGGACTCGTGATACGTCAG
CTTCCGCGGGGAGAGAGTTCGCACGGAGAAGCCTATGTTCCACCTCTGGC
CTCTCCCGAAGTTGAAGGAGGAGGCCACGCGGGAGGCCGGCCCGAGGAAT
GCGTTGAAATATGGTCCATTGCCCGAGGATGA
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