mRNA_P-fluviatile_contig7.13577.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13577.1
Unique NamemRNA_P-fluviatile_contig7.13577.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:1914088..1914539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size452
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817111.5964336-CDS-P-fluviatile_contig7:1914087..19144111622817111.5964336-CDS-P-fluviatile_contig7:1914087..1914411Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1914088..1914411 +
1693571164.3326647-CDS-P-fluviatile_contig7:1914087..19144111693571164.3326647-CDS-P-fluviatile_contig7:1914087..1914411Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1914088..1914411 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817111.6094527-UTR-P-fluviatile_contig7:1914411..19145391622817111.6094527-UTR-P-fluviatile_contig7:1914411..1914539Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1914412..1914539 +
1693571164.343918-UTR-P-fluviatile_contig7:1914411..19145391693571164.343918-UTR-P-fluviatile_contig7:1914411..1914539Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1914412..1914539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13577.1prot_P-fluviatile_contig7.13577.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 1914088..1914411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13577.1

>prot_P-fluviatile_contig7.13577.1 ID=prot_P-fluviatile_contig7.13577.1|Name=mRNA_P-fluviatile_contig7.13577.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=108bp
FDVFEVVAAGTWNQKGDREQKVSAVLLWAIFKGHFRWAKGNTWSTVSSPR
VVKRSACSVDVLFPLPCERKYVFHAFLELSSTLSHNRLQQQRGQRFHDRI
KLAVRVH*
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mRNA from alignment at P-fluviatile_contig7:1914088..1914539+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13577.1 ID=mRNA_P-fluviatile_contig7.13577.1|Name=mRNA_P-fluviatile_contig7.13577.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=452bp|location=Sequence derived from alignment at P-fluviatile_contig7:1914088..1914539+ (Porterinema fluviatile SAG_2381)
TTCGATGTGTTTGAGGTTGTGGCAGCGGGGACGTGGAATCAAAAGGGTGA
CAGAGAGCAAAAGGTGTCCGCAGTACTCCTATGGGCCATTTTTAAAGGAC
ATTTTCGTTGGGCGAAAGGAAACACTTGGTCGACCGTGTCCTCACCCAGA
GTGGTCAAGCGCAGTGCTTGTTCTGTGGACGTGTTATTCCCTTTACCGTG
TGAGCGAAAGTATGTTTTTCACGCCTTTTTGGAGCTTTCCTCGACTTTGA
GTCACAACCGGTTACAACAACAACGGGGGCAGCGCTTCCATGACCGAATC
AAACTGGCCGTCCGCGTGCATTGACGAACTGAAGCTGTACTCTTGTGTTG
TTTCGTCGCCCGGAAGAGTGTACGTGATCATCGGACCGCCCCGAAAGAGA
AAGACCACCGTTTTCACGGCTCGGTTTTGAGCAGGCCGACGCCGCAATAG
GG
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:1914088..1914539+

>mRNA_P-fluviatile_contig7.13577.1 ID=mRNA_P-fluviatile_contig7.13577.1|Name=mRNA_P-fluviatile_contig7.13577.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=648bp|location=Sequence derived from alignment at P-fluviatile_contig7:1914088..1914539+ (Porterinema fluviatile SAG_2381)
TTCGATGTGTTTGAGGTTGTGGCAGCGGGGACGTGGAATCAAAAGGGTGA
CAGAGAGCAAAAGGTGTCCGCAGTACTCCTATGGGCCATTTTTAAAGGAC
ATTTTCGTTGGGCGAAAGGAAACACTTGGTCGACCGTGTCCTCACCCAGA
GTGGTCAAGCGCAGTGCTTGTTCTGTGGACGTGTTATTCCCTTTACCGTG
TGAGCGAAAGTATGTTTTTCACGCCTTTTTGGAGCTTTCCTCGACTTTGA
GTCACAACCGGTTACAACAACAACGGGGGCAGCGCTTCCATGACCGAATC
AAACTGGCCGTCCGCGTGCATTGATTCGATGTGTTTGAGGTTGTGGCAGC
GGGGACGTGGAATCAAAAGGGTGACAGAGAGCAAAAGGTGTCCGCAGTAC
TCCTATGGGCCATTTTTAAAGGACATTTTCGTTGGGCGAAAGGAAACACT
TGGTCGACCGTGTCCTCACCCAGAGTGGTCAAGCGCAGTGCTTGTTCTGT
GGACGTGTTATTCCCTTTACCGTGTGAGCGAAAGTATGTTTTTCACGCCT
TTTTGGAGCTTTCCTCGACTTTGAGTCACAACCGGTTACAACAACAACGG
GGGCAGCGCTTCCATGACCGAATCAAACTGGCCGTCCGCGTGCATTGA
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