mRNA_P-fluviatile_contig7.13573.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13573.1
Unique NamemRNA_P-fluviatile_contig7.13573.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:1864110..1864580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size472
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817111.5488021-UTR-P-fluviatile_contig7:1864109..18642681622817111.5488021-UTR-P-fluviatile_contig7:1864109..1864268Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1864110..1864268 +
1693571164.3148713-UTR-P-fluviatile_contig7:1864109..18642681693571164.3148713-UTR-P-fluviatile_contig7:1864109..1864268Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1864110..1864268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817111.5622797-CDS-P-fluviatile_contig7:1864268..18645801622817111.5622797-CDS-P-fluviatile_contig7:1864268..1864580Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1864269..1864580 +
1693571164.3234878-CDS-P-fluviatile_contig7:1864268..18645801693571164.3234878-CDS-P-fluviatile_contig7:1864268..1864580Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1864269..1864580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13573.1prot_P-fluviatile_contig7.13573.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 1864269..1864580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13573.1

>prot_P-fluviatile_contig7.13573.1 ID=prot_P-fluviatile_contig7.13573.1|Name=mRNA_P-fluviatile_contig7.13573.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=104bp
MGDIWGAPPAAVWIMGGVPLHSSTTDSAGRAKWRNSRDRIHDKHLSTLWM
VCSLHSSTKEPARLAQLRSNNCDEAESKHPAAQYVHCSLALRRSLPCRPS
AESV
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mRNA from alignment at P-fluviatile_contig7:1864110..1864580+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13573.1 ID=mRNA_P-fluviatile_contig7.13573.1|Name=mRNA_P-fluviatile_contig7.13573.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=471bp|location=Sequence derived from alignment at P-fluviatile_contig7:1864110..1864580+ (Porterinema fluviatile SAG_2381)
TCCTACTTTCCTTTCTGGAATACCAAAAAAGAGTGTTGTTGTACCTGCCG
CGGCATGCTTTTGTTGTTTTCGTCTTTCCTCGTCTGGATTTTGTGTTGGG
GTATGGGAACATTGCCGCGATGGGGGCTGGTACTCTTCGGTGTTCCTCGT
TCGCCATAGATGGGTGACATTTGGGGTGCCCCCCCCGCCGCGGTGTGGAT
AATGGGTGGTGTGCCCTTGCACTCTTCCACGACGGATTCGGCAGGGCGGG
CAAAATGGCGAAACAGCAGAGACAGGATACATGATAAACACCTTTCCACG
CTCTGGATGGTATGCAGCTTGCACTCTTCGACGAAGGAACCGGCAAGGCT
GGCACAGTTGCGAAGCAACAATTGCGACGAAGCAGAGAGTAAGCACCCCG
CCGCGCAATACGTGCATTGTAGCCTGGCCTTGAGACGGTCACTCCCTTGC
CGGCCTTCTGCTGAAAGTGTT
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:1864110..1864580+

>mRNA_P-fluviatile_contig7.13573.1 ID=mRNA_P-fluviatile_contig7.13573.1|Name=mRNA_P-fluviatile_contig7.13573.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=624bp|location=Sequence derived from alignment at P-fluviatile_contig7:1864110..1864580+ (Porterinema fluviatile SAG_2381)
ATGGGTGACATTTGGGGTGCCCCCCCCGCCGCGGTGTGGATAATGGGTGG
TGTGCCCTTGCACTCTTCCACGACGGATTCGGCAGGGCGGGCAAAATGGC
GAAACAGCAGAGACAGGATACATGATAAACACCTTTCCACGCTCTGGATG
GTATGCAGCTTGCACTCTTCGACGAAGGAACCGGCAAGGCTGGCACAGTT
GCGAAGCAACAATTGCGACGAAGCAGAGAGTAAGCACCCCGCCGCGCAAT
ACGTGCATTGTAGCCTGGCCTTGAGACGGTCACTCCCTTGCCGGCCTTCT
GCTGAAAGTGTTATGGGTGACATTTGGGGTGCCCCCCCCGCCGCGGTGTG
GATAATGGGTGGTGTGCCCTTGCACTCTTCCACGACGGATTCGGCAGGGC
GGGCAAAATGGCGAAACAGCAGAGACAGGATACATGATAAACACCTTTCC
ACGCTCTGGATGGTATGCAGCTTGCACTCTTCGACGAAGGAACCGGCAAG
GCTGGCACAGTTGCGAAGCAACAATTGCGACGAAGCAGAGAGTAAGCACC
CCGCCGCGCAATACGTGCATTGTAGCCTGGCCTTGAGACGGTCACTCCCT
TGCCGGCCTTCTGCTGAAAGTGTT
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