mRNA_P-fluviatile_contig7.13569.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13569.1
Unique NamemRNA_P-fluviatile_contig7.13569.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig7.13569.1 vs. uniprot
Match: D8LM95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM95_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 3.350e-35
Identity = 65/99 (65.66%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:    1 LPLRERLAQCIAMKLKGNDQMQNGRPDDACQTYEQALAMFWYLENRNEGWKTSGIKDEDIREVNFSPSSGVEALEEETRNVKVALLLNIARAYSAQGDY 297
            LPL ER+ +C ++KL+GN++M+NG PD ACQ YEQALAMFWYL+N N  WKTS IKDEDI EVNF    G +   EE R++ VALLLNIARAYSAQ DY
Sbjct:   48 LPLEERVGECTSLKLEGNEEMRNGCPDKACQLYEQALAMFWYLKNHNINWKTSEIKDEDIEEVNFWLGRGSDKSTEEIRDLNVALLLNIARAYSAQNDY 146
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BLAST of mRNA_P-fluviatile_contig7.13569.1 vs. uniprot
Match: A0A6G0XA18_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XA18_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.210e-9
Identity = 34/90 (37.78%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:    1 LPLRERLAQCIAMKLKGNDQMQNGRPDDACQTYEQALAMFWYLENRNEGWKTSGIKDEDIREVNFSPSSGVEALEEETRNVKVALLLNIA 270
            LP  ER    + +K +GN        ++A   YE+ALA+F Y EN +  WK  GI+D+DIR V+F      E  + +   +KV+L LNI+
Sbjct:   53 LPFHERFEMAVEIKAQGNAHFAKQEYEEAVAQYEKALALFKYCENTDPEWKKKGIRDDDIRVVDFKVEDDDEG-QNQLDALKVSLYLNIS 141
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM95_ECTSI3.350e-3565.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6G0XA18_9STRA3.210e-937.78Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:1837796..1839310 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.1
Seed ortholog evalue4.4e-30
Seed eggNOG ortholog2880.D8LM95
EggNOG OGs2E1RR@1,2S91S@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size301
Cds size297
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13569.1prot_P-fluviatile_contig7.13569.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 1837798..1839310 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817126.5014029-CDS-P-fluviatile_contig7:1837797..18378581622817126.5014029-CDS-P-fluviatile_contig7:1837797..1837858Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1837798..1837858 -
1693571226.233557-CDS-P-fluviatile_contig7:1837797..18378581693571226.233557-CDS-P-fluviatile_contig7:1837797..1837858Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1837798..1837858 -
1622817126.5128775-CDS-P-fluviatile_contig7:1838310..18384411622817126.5128775-CDS-P-fluviatile_contig7:1838310..1838441Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1838311..1838441 -
1693571226.2450728-CDS-P-fluviatile_contig7:1838310..18384411693571226.2450728-CDS-P-fluviatile_contig7:1838310..1838441Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1838311..1838441 -
1622817126.5270286-CDS-P-fluviatile_contig7:1839205..18393101622817126.5270286-CDS-P-fluviatile_contig7:1839205..1839310Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1839206..1839310 -
1693571226.2541316-CDS-P-fluviatile_contig7:1839205..18393101693571226.2541316-CDS-P-fluviatile_contig7:1839205..1839310Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1839206..1839310 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13569.1

>prot_P-fluviatile_contig7.13569.1 ID=prot_P-fluviatile_contig7.13569.1|Name=mRNA_P-fluviatile_contig7.13569.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=99bp
LPLRERLAQCIAMKLKGNDQMQNGRPDDACQTYEQALAMFWYLENRNEGW
KTSGIKDEDIREVNFSPSSGVEALEEETRNVKVALLLNIARAYSAQGDY
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mRNA from alignment at P-fluviatile_contig7:1837796..1839310-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13569.1 ID=mRNA_P-fluviatile_contig7.13569.1|Name=mRNA_P-fluviatile_contig7.13569.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1515bp|location=Sequence derived from alignment at P-fluviatile_contig7:1837796..1839310- (Porterinema fluviatile SAG_2381)
CTCCCTCTCCGAGAAAGGTTGGCACAGTGCATTGCGATGAAGCTCAAGGG
CAATGATCAGATGCAAAACGGCCGCCCGGACGATGCGTGCCAGACCTACG
AACAGGTGAGGGATCGCACAGCAGATGTACTGCGCCACCACCACCCAGCG
AGGATTACACAGCAGGTGTATTCCGTATAAACAAACAAGCTAGGTTTCGC
ACAGCAGATACATTCCGCAGCAACGAATAGGCAAGGGATCACACAGCAGG
CGCATTCCGCAGAAGCGAGCAATTGGAGGTAAGCACAGTGTAGACGCTTT
CGGCAGCAAGGTGGCTAATTATTAACGCAAAATTGACCGACGCCTTACGC
GTACCCATTCACGGTGCTAGAATTTCACAAGCTTGTGATATCACCCCGGG
CACATGAATGTCACCACGGCGAGACAGAGGAAATGTGGCCTGCCTCTCGG
GCACCATCCGTGCTGCCAATGTTCCCGAGATGAAACCCTGCCGCAAGGAG
TTGTCGTTGACGGTGCGACGGTTGAGGTTCGGTGCGCTTTTCATCGGGCT
ACTAGGAAAAGACGGCAGGCCTTGGATAGAGCTTGCAGTGAACAAGCCTT
CCCTGCATAGGCGGCCACATGTGTGTGTTGATTTCCTCCTCACGCTGGAG
AATCGACCCCCAACGCTGAGGCTCAAGGGAAAGAGCTTGGACTTCAACAT
CCCTTGCCCGTGGGTTCGTGTTTGGTTCTTTCTGGCTGCAGCACCAGCGT
TATGAAGGAGATACACTTCGTGCGACAATCACGAGCACGAAAGGTTTCCC
ACAAAGCGGCGGTTTCCCTCAAAGCGCAGCATGTGCTCCATTCTTGCCTC
GAACGCAACGTTTGCAAAGGCGCTGGCGATGTTCTGGTACCTGGAAAACC
GCAACGAAGGGTGGAAGACCAGCGGGATCAAGGACGAGGACATCCGCGAA
GTCAACTTTTCCCCGTCGTCTGGGGTCGAGGCCTTGGAGGAGGAGACAAG
GTAACATTGCGCTTCGATGTGCTCCCGGGGGGATATACCGTTCGCCTCTG
TGGATCTGAGACTCTCGTGGTTGTTATCTTGTGGCTTGGCGACGTGGTTG
CCCTGCTTTTCGGTGTATCCGCTGACGCCTGCTGTCGGCTAAGCTAGGGG
CCGGCCTGTTGCTGCAGTTGCTGTTAGCAGTCTGATGCGCATTGCACGAC
ACGGCTCACGTCAAATGAGGTAGCACTGAAATATTGCACCAACGAACGGC
GATTGCGACCACCGACAGTACAACGTTCACTCCGTTCCTACGGTAGGGCA
TGCAAAATTTTCGACGGACGCACTTAACGACTTCGGCAAGTAACAAAATC
AAGCGTCCCCATTCGCCCCCCTCTGCTGCACGCGCTTGATTCATATCCCC
GCGACAAACACGCCTTGGTTGACTTTCTCACAACATTCGACAAACAAAAA
AGGAACGTGAAGGTGGCTCTATTGCTCAACATTGCTCGGGCGTACTCCGC
CCAAGGTGATTACGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:1837796..1839310-

>mRNA_P-fluviatile_contig7.13569.1 ID=mRNA_P-fluviatile_contig7.13569.1|Name=mRNA_P-fluviatile_contig7.13569.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=594bp|location=Sequence derived from alignment at P-fluviatile_contig7:1837796..1839310- (Porterinema fluviatile SAG_2381)
CTCCCTCTCCGAGAAAGGTTGGCACAGTGCATTGCGATGAAGCTCAAGGG
CAATGATCAGATGCAAAACGGCCGCCCGGACGATGCGTGCCAGACCTACG
AACAGCTCCCTCTCCGAGAAAGGTTGGCACAGTGCATTGCGATGAAGCTC
AAGGGCAATGATCAGATGCAAAACGGCCGCCCGGACGATGCGTGCCAGAC
CTACGAACAGGCGCTGGCGATGTTCTGGTACCTGGAAAACCGCAACGAAG
GGTGGAAGACCAGCGGGATCAAGGACGAGGACATCCGCGAAGTCAACTTT
TCCCCGTCGTCTGGGGTCGAGGCCTTGGAGGAGGAGACAAGGCGCTGGCG
ATGTTCTGGTACCTGGAAAACCGCAACGAAGGGTGGAAGACCAGCGGGAT
CAAGGACGAGGACATCCGCGAAGTCAACTTTTCCCCGTCGTCTGGGGTCG
AGGCCTTGGAGGAGGAGACAAGGAACGTGAAGGTGGCTCTATTGCTCAAC
ATTGCTCGGGCGTACTCCGCCCAAGGTGATTACGAACGTGAAGGTGGCTC
TATTGCTCAACATTGCTCGGGCGTACTCCGCCCAAGGTGATTAC
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