mRNA_P-fluviatile_contig7.13553.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13553.1
Unique NamemRNA_P-fluviatile_contig7.13553.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:1637651..1638401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size751
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13553.1prot_P-fluviatile_contig7.13553.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 1637705..1638205 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817111.48814-UTR-P-fluviatile_contig7:1637650..16377041622817111.48814-UTR-P-fluviatile_contig7:1637650..1637704Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1637651..1637704 +
1693571164.2882898-UTR-P-fluviatile_contig7:1637650..16377041693571164.2882898-UTR-P-fluviatile_contig7:1637650..1637704Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1637651..1637704 +
1622817111.5099218-UTR-P-fluviatile_contig7:1638205..16384011622817111.5099218-UTR-P-fluviatile_contig7:1638205..1638401Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1638206..1638401 +
1693571164.3067913-UTR-P-fluviatile_contig7:1638205..16384011693571164.3067913-UTR-P-fluviatile_contig7:1638205..1638401Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1638206..1638401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817111.4990458-CDS-P-fluviatile_contig7:1637704..16382051622817111.4990458-CDS-P-fluviatile_contig7:1637704..1638205Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1637705..1638205 +
1693571164.2974732-CDS-P-fluviatile_contig7:1637704..16382051693571164.2974732-CDS-P-fluviatile_contig7:1637704..1638205Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1637705..1638205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13553.1

>prot_P-fluviatile_contig7.13553.1 ID=prot_P-fluviatile_contig7.13553.1|Name=mRNA_P-fluviatile_contig7.13553.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=167bp
MTFALCFLLPFLLLAAVPAAAGVSSSLELRRPASNAPKPPAAPLRVPMPN
SYSAGAPPTPAAAGPDFEFVAIRLAIGEWSSRLLVIIIRRASTCCRLRHC
CCGRWLRNPARGLPSCRLAPHRRRPYAAARPLPRPQLAGRVYAGEIWTQA
SPAHGRRRALLPCVGR*
back to top

mRNA from alignment at P-fluviatile_contig7:1637651..1638401+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13553.1 ID=mRNA_P-fluviatile_contig7.13553.1|Name=mRNA_P-fluviatile_contig7.13553.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=751bp|location=Sequence derived from alignment at P-fluviatile_contig7:1637651..1638401+ (Porterinema fluviatile SAG_2381)
CTCACGCTTTTGCTTCGCATTTGTGGCCTACGTCGCAGGTGTAGCGGGTT
GGGCATGACATTCGCTCTTTGCTTCCTTTTGCCGTTTTTGCTTTTAGCCG
CCGTGCCTGCAGCCGCCGGCGTCTCGTCATCTCTGGAGTTGCGAAGGCCA
GCGTCGAACGCGCCGAAACCGCCCGCAGCCCCGCTGCGGGTCCCGATGCC
GAATTCGTATTCCGCGGGTGCTCCTCCAACCCCTGCCGCTGCCGGTCCCG
ATTTTGAATTCGTCGCCATCAGACTTGCCATCGGAGAATGGTCCTCCCGC
CTGCTCGTCATTATCATCAGGCGTGCCTCCACCTGCTGCCGCCTGAGACA
TTGCTGCTGCGGCCGTTGGTTGCGCAACCCCGCCCGGGGCCTTCCTTCTT
GCCGCCTTGCTCCGCACCGGCGGCGTCCCTACGCTGCTGCTCGACCACTC
CCGCGGCCACAGCTAGCTGGGAGAGTGTACGCAGGGGAGATCTGGACACA
GGCCTCTCCTGCCCACGGTCGGCGTCGTGCCCTTCTCCCGTGCGTTGGCC
GTTAGAGCGTCTCTTTGGCGGGGCACGAGTACAGCCATCATGCATGCCCA
CAAGCGGCTCTGCTCTCTCCGAGTTCGTGGAATATCAGGGGCGGACCCCC
TGTCTCGGAGATCTACCCACTGAAGGTCTGCTGCTAGCATGGTGCAGGCT
GCTGGCGGCTGGCATATGTGCGTATTACGACGGTAGGGTGCCGGGTGTGC
T
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig7:1637651..1638401+

>mRNA_P-fluviatile_contig7.13553.1 ID=mRNA_P-fluviatile_contig7.13553.1|Name=mRNA_P-fluviatile_contig7.13553.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1002bp|location=Sequence derived from alignment at P-fluviatile_contig7:1637651..1638401+ (Porterinema fluviatile SAG_2381)
ATGACATTCGCTCTTTGCTTCCTTTTGCCGTTTTTGCTTTTAGCCGCCGT
GCCTGCAGCCGCCGGCGTCTCGTCATCTCTGGAGTTGCGAAGGCCAGCGT
CGAACGCGCCGAAACCGCCCGCAGCCCCGCTGCGGGTCCCGATGCCGAAT
TCGTATTCCGCGGGTGCTCCTCCAACCCCTGCCGCTGCCGGTCCCGATTT
TGAATTCGTCGCCATCAGACTTGCCATCGGAGAATGGTCCTCCCGCCTGC
TCGTCATTATCATCAGGCGTGCCTCCACCTGCTGCCGCCTGAGACATTGC
TGCTGCGGCCGTTGGTTGCGCAACCCCGCCCGGGGCCTTCCTTCTTGCCG
CCTTGCTCCGCACCGGCGGCGTCCCTACGCTGCTGCTCGACCACTCCCGC
GGCCACAGCTAGCTGGGAGAGTGTACGCAGGGGAGATCTGGACACAGGCC
TCTCCTGCCCACGGTCGGCGTCGTGCCCTTCTCCCGTGCGTTGGCCGTTA
GATGACATTCGCTCTTTGCTTCCTTTTGCCGTTTTTGCTTTTAGCCGCCG
TGCCTGCAGCCGCCGGCGTCTCGTCATCTCTGGAGTTGCGAAGGCCAGCG
TCGAACGCGCCGAAACCGCCCGCAGCCCCGCTGCGGGTCCCGATGCCGAA
TTCGTATTCCGCGGGTGCTCCTCCAACCCCTGCCGCTGCCGGTCCCGATT
TTGAATTCGTCGCCATCAGACTTGCCATCGGAGAATGGTCCTCCCGCCTG
CTCGTCATTATCATCAGGCGTGCCTCCACCTGCTGCCGCCTGAGACATTG
CTGCTGCGGCCGTTGGTTGCGCAACCCCGCCCGGGGCCTTCCTTCTTGCC
GCCTTGCTCCGCACCGGCGGCGTCCCTACGCTGCTGCTCGACCACTCCCG
CGGCCACAGCTAGCTGGGAGAGTGTACGCAGGGGAGATCTGGACACAGGC
CTCTCCTGCCCACGGTCGGCGTCGTGCCCTTCTCCCGTGCGTTGGCCGTT
AG
back to top