mRNA_P-fluviatile_contig7.13517.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13517.1
Unique NamemRNA_P-fluviatile_contig7.13517.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig7.13517.1 vs. uniprot
Match: A0A6H5KJS7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS7_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 2.930e-50
Identity = 78/133 (58.65%), Postives = 100/133 (75.19%), Query Frame = 1
Query:    1 AEQTPDLYRGAVEAAAAALGERFSSHTRAPAPLSDSGSLAEKRAAAQQHAGLCGQHHANFIAGVDFNEVQERVVGGHVRTKNLRNQACFDAAIGLNAKGRGVQLKRKECFTQACRAIWPGDQPLPEAIVTALS 399
            A QTP+ +R A++AAA A+G R+ +H   P PL D G L E++AA QQHAGLCG++HA  IA +D   V+ER  G  + TK +RNQAC+DA   LNA+GRGVQL+R+ECFTQACRA+WP DQPLP A++ ALS
Sbjct:   65 AAQTPERFREAMQAAAVAVGARYCNHDTPPGPLPDIGKLPERQAAVQQHAGLCGKYHAEHIANIDVTMVEERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWPDDQPLPVAVLAALS 197          
BLAST of mRNA_P-fluviatile_contig7.13517.1 vs. uniprot
Match: A0A6H5KGD0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD0_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 2.160e-47
Identity = 85/166 (51.20%), Postives = 109/166 (65.66%), Query Frame = 1
Query:    1 AEQTPDLYRGAVEAAAAALGERFSSHTRAPAPLSDSGSLAEKRAAAQQHAGLCGQHHANFIAGVDFNEVQERVVGGHVRTKNLRNQACFDAAIGLNAKGRGVQLKRKECFTQACRAIWPGDQPLPEAIVTALSQQSCISARCC-RFRLQQGWL*EGHGRGISVLIR 495
            A QTP+ +R A++AAA A+G R+ +H   P PL D   L E++AA QQHAGLCG++HA  IA +D   V+ER  G  + TK +RNQAC+DA   LNA+GRGVQL+R+ECFTQAC A+WP DQPLP A    L+   CI  R C R R +      G    +SVLI+
Sbjct:   35 AAQTPERFREALQAAAVAVGARYCNHDTPPGPLPDISKLPERQAAVQQHAGLCGKYHAEHIANIDVTRVEERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACCAVWPDDQPLPAA---KLAIVRCIVWRTCHRLRTR------GRVAMLSVLIK 191          
BLAST of mRNA_P-fluviatile_contig7.13517.1 vs. uniprot
Match: A0A6H5JXC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC7_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 2.380e-47
Identity = 74/133 (55.64%), Postives = 98/133 (73.68%), Query Frame = 1
Query:    1 AEQTPDLYRGAVEAAAAALGERFSSHTRAPAPLSDSGSLAEKRAAAQQHAGLCGQHHANFIAGVDFNEVQERVVGGHVRTKNLRNQACFDAAIGLNAKGRGVQLKRKECFTQACRAIWPGDQPLPEAIVTALS 399
            A QTP+ +R A++AAA A+G R+ +H   P PL D   L E++AAAQQHAGLCG++HA  IA +D   V+ R  G  + TK +RN+AC+DA   LNA+GRGVQL+R++CFT ACRA+WP DQPLP A++ ALS
Sbjct:   46 AAQTPERFREALQAAAVAVGARYCNHDTPPGPLPDISKLPERQAAAQQHAGLCGKYHAEHIANIDVTMVETRAAGAEITTKRMRNKACYDAGTALNARGRGVQLRRQKCFTHACRAVWPDDQPLPAAVLDALS 178          
BLAST of mRNA_P-fluviatile_contig7.13517.1 vs. uniprot
Match: A0A6H5K3W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3W2_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 2.640e-40
Identity = 68/121 (56.20%), Postives = 87/121 (71.90%), Query Frame = 1
Query:    1 AEQTPDLYRGAVEAAAAALGERFSSHTRAPAPLSDSGSLAEKRAAAQQHAGLCGQHHANFIAGVDFNEVQERVVGGHVRTKNLRNQACFDAAIGLNAKGRGVQLKRKECFTQACRAIWPGD 363
            A QTP+ +R A++AAA A+G R+ +H   P PL D   L E +AAAQQHAG CG++H   IA +D   V+ER  G  + TK +RNQAC+DA   LNA+GRGVQL+R+ECFTQACRA+WP D
Sbjct:  169 AAQTPEGFREALQAAAVAVGARYCNHDTPPGPLPDISKLPEMQAAAQQHAGSCGKYHGEHIANIDVTMVKERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWPDD 289          
BLAST of mRNA_P-fluviatile_contig7.13517.1 vs. uniprot
Match: A0A6H5JXX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX9_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 3.410e-26
Identity = 54/127 (42.52%), Postives = 73/127 (57.48%), Query Frame = 1
Query:    4 EQTPDLYRGAVEAAAAALGERFSSHTRAPAPLSDSGSLAEKRAAAQQHAGLCGQHHANFIAGVDFNEVQERVVGGHVRTKNLRNQACFDAAIGLNAKGRGVQLKRKECFTQACRAIWPGDQPLPEAI 384
            E T  L R      AA +G  +  H  AP P+      A K+AAA+ H GLCG HHA+ IA V   +V  R   G       RNQAC+D  + +N +G+GVQLKR +CFT ACRA+WPG++ +  ++
Sbjct:   35 EGTSTLLRAFAFEVAAKVGAEYCHHDTAPEPMPSMALAAAKKAAAE-HPGLCGVHHAHIIAAVRTEDVTSR--SGFTAANKFRNQACYDGGMAMNTRGKGVQLKRADCFTHACRAVWPGNEEMEASV 158          
BLAST of mRNA_P-fluviatile_contig7.13517.1 vs. uniprot
Match: A0A6H5KUP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP8_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.950e-25
Identity = 55/123 (44.72%), Postives = 72/123 (58.54%), Query Frame = 1
Query:    4 EQTPDLYRGAVEAAAAALGERFSSHTRAPAPLSDSGSLAEKRAAAQQHAGLCGQHHANFIAGVDFNEVQERVVGGHVRTKNLRNQACFDAAIGLNAKGRGVQLKRKECFTQACRAIWPGDQPL 372
            E T  L R      AA +G  +  H  AP P+      A K+AAA+ H GLCG +HA+ IA V   +V  R   G       RNQAC+D A+ +NA+G+GVQLKR ECFT A RA+WPG++ +
Sbjct:   33 EDTSTLVRAFAFEVAAKVGAEYCHHDTAPEPMPSMALAAAKKAAAE-HPGLCGVYHAHIIAAVRTEDVTSR--SGSTAANKFRNQACYDGAMAMNARGKGVQLKRAECFTHARRAVWPGNEEM 152          
BLAST of mRNA_P-fluviatile_contig7.13517.1 vs. uniprot
Match: A0A6H5K6B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B0_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.180e-23
Identity = 54/123 (43.90%), Postives = 71/123 (57.72%), Query Frame = 1
Query:    4 EQTPDLYRGAVEAAAAALGERFSSHTRAPAPLSDSGSLAEKRAAAQQHAGLCGQHHANFIAGVDFNEVQERVVGGHVRTKNLRNQACFDAAIGLNAKGRGVQLKRKECFTQACRAIWPGDQPL 372
            E T  L R      AA +G  +  H  AP P+      A K+AAA+ H GLCG +HA+ IA V   +V  +   G       RNQAC+D A+ +NA G+GVQLKR ECFT A RA+WPG++ +
Sbjct:  102 EDTSTLVRAFAFEVAAKVGAEYCHHDTAPEPMPSMALAAAKKAAAE-HPGLCGVYHAHIIAAVRTEDVTSQ--SGSTAANKFRNQACYDGAMAMNAHGKGVQLKRAECFTHARRAVWPGNEEM 221          
BLAST of mRNA_P-fluviatile_contig7.13517.1 vs. uniprot
Match: A0A6H5JH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH50_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.210e-23
Identity = 57/140 (40.71%), Postives = 81/140 (57.86%), Query Frame = 1
Query:    4 EQTPDLYRGAVEAAAAALGERFSSHTRAPAPLSDSGSLAEKRAAAQQHAGLCGQHHANFIAGVDFNEVQERVVGGHVRTKNLRNQACFDAAIGLNAKGRGVQLKRKECFTQACRAIWPGDQPLPEAIVTALSQQSCISAR 423
            E+  D+ R      A+ +G R+ SH  AP PL D  S A+++ AA  H GLCG +HA+ IA V   +V E+           RNQAC++ A  +NA+G GVQL R ECFT+ACRA+ PG   +   +V A  +++  +AR
Sbjct:  104 EENTDVGRAFAFEVASKVGARYCSHVSAPEPLEDM-SHAKRKKAAADHPGLCGVYHAHIIAAVRTQDVAEK--WNQTTGNKYRNQACYNGAEAVNARGAGVQLPRAECFTRACRALLPGSGEMDPLVVEAFHRKNQGAAR 240          
BLAST of mRNA_P-fluviatile_contig7.13517.1 vs. uniprot
Match: A0A6H5JAI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAI4_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.900e-23
Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = 1
Query:  115 LAEKRAAAQQHAGLCGQHHANFIAGVDFNEVQERVVGGHVRTKNLRNQACFDAAIGLNAKGRGVQLKRKECFTQACRAIWPGDQPLPEAIVTALSQQSCISARC 426
            LA  + AA +H GLCG +HA+ IA V   +V  R   G       RNQAC+D A+ +NA+G+GVQLKR ECFT A RA+WPG++ +  ++V A  + S + A C
Sbjct:    6 LAAAKKAAAEHPGLCGVYHAHIIAAVRTEDVTSR--SGSTAANKFRNQACYDGAMAMNARGKGVQLKRAECFTHAGRAVWPGNEEMEASVVEA--RTSWMKAGC 105          
BLAST of mRNA_P-fluviatile_contig7.13517.1 vs. uniprot
Match: A0A6H5JI26_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI26_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 7.380e-23
Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  205 VQERVVGGHVRTKNLRNQACFDAAIGLNAKGRGVQLKRKECFTQACRAIWPGDQPLPEAIVTALS 399
            V+ER  G  + TK + NQAC+DA + LNA+GRGVQL+ +EC TQACRA+WP DQPLP A++ ALS
Sbjct:    2 VEERAAGAEITTKRMMNQACYDAGMALNARGRGVQLRSQECSTQACRAVWPDDQPLPAAVLAALS 66          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5KJS7_9PHAE2.930e-5058.65Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGD0_9PHAE2.160e-4751.20Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXC7_9PHAE2.380e-4755.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3W2_9PHAE2.640e-4056.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXX9_9PHAE3.410e-2642.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUP8_9PHAE1.950e-2544.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6B0_9PHAE1.180e-2343.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH50_9PHAE2.210e-2340.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAI4_9PHAE2.900e-2346.15Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI26_9PHAE7.380e-2361.54Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:1122081..1123537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size764
Cds size459
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13517.1prot_P-fluviatile_contig7.13517.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 1122386..1123537 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817120.8338823-UTR-P-fluviatile_contig7:1122080..11223851622817120.8338823-UTR-P-fluviatile_contig7:1122080..1122385Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1122081..1122385 -
1693571210.3168247-UTR-P-fluviatile_contig7:1122080..11223851693571210.3168247-UTR-P-fluviatile_contig7:1122080..1122385Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1122081..1122385 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817120.8465772-CDS-P-fluviatile_contig7:1122385..11225861622817120.8465772-CDS-P-fluviatile_contig7:1122385..1122586Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1122386..1122586 -
1693571210.325073-CDS-P-fluviatile_contig7:1122385..11225861693571210.325073-CDS-P-fluviatile_contig7:1122385..1122586Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1122386..1122586 -
1622817120.8599215-CDS-P-fluviatile_contig7:1123279..11235371622817120.8599215-CDS-P-fluviatile_contig7:1123279..1123537Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1123280..1123537 -
1693571210.3332574-CDS-P-fluviatile_contig7:1123279..11235371693571210.3332574-CDS-P-fluviatile_contig7:1123279..1123537Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1123280..1123537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13517.1

>prot_P-fluviatile_contig7.13517.1 ID=prot_P-fluviatile_contig7.13517.1|Name=mRNA_P-fluviatile_contig7.13517.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=153bp
AEQTPDLYRGAVEAAAAALGERFSSHTRAPAPLSDSGSLAEKRAAAQQHA
GLCGQHHANFIAGVDFNEVQERVVGGHVRTKNLRNQACFDAAIGLNAKGR
GVQLKRKECFTQACRAIWPGDQPLPEAIVTALSQQSCISARCCRFRLQQG
WL*
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mRNA from alignment at P-fluviatile_contig7:1122081..1123537-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13517.1 ID=mRNA_P-fluviatile_contig7.13517.1|Name=mRNA_P-fluviatile_contig7.13517.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1457bp|location=Sequence derived from alignment at P-fluviatile_contig7:1122081..1123537- (Porterinema fluviatile SAG_2381)
GCTGAACAAACCCCCGACCTCTACCGGGGAGCTGTCGAGGCGGCAGCAGC TGCTCTGGGTGAGCGCTTCTCTTCCCACACGCGAGCCCCGGCCCCTCTTT CCGACTCGGGTAGCCTGGCGGAGAAGAGAGCCGCTGCTCAGCAGCACGCA GGGCTGTGTGGACAGCACCATGCAAACTTCATAGCCGGCGTAGACTTCAA CGAAGTTCAGGAGCGGGTCGTCGGTGGGCATGTTCGCACAAAGAATCTCC GCAATCAGGTAAGGATACTGTAAGACTAGTATACGAGGCTACACTCAGTT CAAACTTGTTGATTTGACTGTTGTATCAAGTTCGCTGCTCCTGGAGGAGA AAGCTTCGGCGCTGTTGCCTGAGGTATTTGGTGCTTGGATTACTGCTGTG ACCCGAATTTTTATTATCCATGCCGCTCGTCACACGACCATTGTACAGTG AGGGTGTGTTTACAACGCTCCGTCGGCCAATTCCTGAGGCTCAACTTCTC ACCACGAGGCTTGTGTCGTACGTCCAAGCGCAGCTTCGGGCATACAGCAG TTGCGCTTCTCAGCATTTTTTGTTTCATTTTCTGCCCGATTCCTTGGCGG AAAACACGAGTACAGCACCTCTACAAAGTGCATACCTGTACTTCATTTGT ATTTTCCGCGAAGAATACTACGCTGTACGCGTGTATGTGCTCGTAAGAGC TGGCCCGTCGTCATATCTTCGTCGAAGCTATTTTTCAGATGTGTGCGCAT ATGTTGCATAATATGAACAGAAAATACCGAGAAAACGAGATACTCTCAAG TCCAAGATTTACCGACTGCTTCAAGAATGGCTGTAGGGTGAACATCACCT TTTTGACAGCGTTGAGGCGCGCCTCCCGTGAAGCCGGTCACAGTACTTAA TTATTTCTGAATTTCGATTCGTTGAAACCGTTCTTTCGTCTCAAACGCCA GGCCTGTTTTGATGCTGCAATCGGTCTCAACGCCAAAGGCCGTGGCGTTC AGCTCAAGAGGAAGGAGTGCTTCACCCAAGCATGCCGGGCCATCTGGCCT GGGGACCAGCCTCTTCCCGAAGCCATCGTCACGGCGCTATCCCAGCAGAG TTGCATTTCAGCCCGGTGCTGCCGTTTTCGTTTGCAGCAAGGCTGGCTTT GAGAAGGGCATGGGCGAGGGATTTCCGTTTTGATTCGCGTTTACGATGCG AGAGTGCGTAGCTGTATCACAGCGCCCGATCGGGGACGTTTTTGGGAGAT GATGTTTTGGTGCTGAGTTAGAGAATTATGGCTGATCTTTCGCTGGCTGT CTTGATGATTTTGAGGTATCAAGTAGGGCGGGCATATTTGGCTCGATTAT TTCGGTGCTTCGTGTGTGTCTCTCACGCGCGAAAAAATAAATCTTGGCCG GTGTTGACATCTTTGGCTGCGGCCAAAAAAAAAATTTGGATCGAGGGCAG GTGCACC
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:1122081..1123537-

>mRNA_P-fluviatile_contig7.13517.1 ID=mRNA_P-fluviatile_contig7.13517.1|Name=mRNA_P-fluviatile_contig7.13517.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=918bp|location=Sequence derived from alignment at P-fluviatile_contig7:1122081..1123537- (Porterinema fluviatile SAG_2381)
GCTGAACAAACCCCCGACCTCTACCGGGGAGCTGTCGAGGCGGCAGCAGC
TGCTCTGGGTGAGCGCTTCTCTTCCCACACGCGAGCCCCGGCCCCTCTTT
CCGACTCGGGTAGCCTGGCGGAGAAGAGAGCCGCTGCTCAGCAGCACGCA
GGGCTGTGTGGACAGCACCATGCAAACTTCATAGCCGGCGTAGACTTCAA
CGAAGTTCAGGAGCGGGTCGTCGGTGGGCATGTTCGCACAAAGAATCTCC
GCAATCAGGCTGAACAAACCCCCGACCTCTACCGGGGAGCTGTCGAGGCG
GCAGCAGCTGCTCTGGGTGAGCGCTTCTCTTCCCACACGCGAGCCCCGGC
CCCTCTTTCCGACTCGGGTAGCCTGGCGGAGAAGAGAGCCGCTGCTCAGC
AGCACGCAGGGCTGTGTGGACAGCACCATGCAAACTTCATAGCCGGCGTA
GACTTCAACGAAGTTCAGGAGCGGGTCGTCGGTGGGCATGTTCGCACAAA
GAATCTCCGCAATCAGGCCTGTTTTGATGCTGCAATCGGTCTCAACGCCA
AAGGCCGTGGCGTTCAGCTCAAGAGGAAGGAGTGCTTCACCCAAGCATGC
CGGGCCATCTGGCCTGGGGACCAGCCTCTTCCCGAAGCCATCGTCACGGC
GCTATCCCAGCAGAGTTGCATTTCAGCCCGGTGCTGCCGTTTTCGTTTGC
AGCAAGGCTGGCTTTGAGCCTGTTTTGATGCTGCAATCGGTCTCAACGCC
AAAGGCCGTGGCGTTCAGCTCAAGAGGAAGGAGTGCTTCACCCAAGCATG
CCGGGCCATCTGGCCTGGGGACCAGCCTCTTCCCGAAGCCATCGTCACGG
CGCTATCCCAGCAGAGTTGCATTTCAGCCCGGTGCTGCCGTTTTCGTTTG
CAGCAAGGCTGGCTTTGA
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