mRNA_P-fluviatile_contig7.13513.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13513.1
Unique NamemRNA_P-fluviatile_contig7.13513.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig7.13513.1 vs. uniprot
Match: A0A6H5KFJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ3_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 5.450e-81
Identity = 142/225 (63.11%), Postives = 167/225 (74.22%), Query Frame = 1 
Query: 2143 ILAAPD----SRDGSTTALESLELSTASPIGKLPSEVESPPLNVKGVKASVFRREWEKAMREELDGHLKTGTFSSEEKIPQGRCSLSSK*VLSWKTNKQGRIEKFKARLVAQGFAQIQNMDFLHSSFPCPSPASIKTVLAVANEKGIPLRHRDVK*AYTHAPLKNRVWINCCDGCGDLSHTTAKAERAIYGLKQSGRESGYHAADTLVENGFEQSKADPCIFRKV 2805
            +L A D    S D    AL S +LST SP GK PS+VESPP+ V GV  SV+R  WE+AMREE DGHL TGTFS  +  P+GR  +SSK   +WKTNK G+IEKFKARLVA+GF++I N+D+ HSS PCPS ASIK +LAVANEK + L H DVK A+THA L   V++    GCG+ SH   KAERAIYGLKQSGR+ GYHAADTLVENGFEQ KADPC+FRK+
Sbjct:   78 LLGAEDLVLNSPDAFVRALASTKLSTESPRGKRPSDVESPPMTVAGVNKSVYREGWEQAMREEFDGHLGTGTFSFVDGTPEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKM 302
[Close]
BLAST of mRNA_P-fluviatile_contig7.13513.1 vs. uniprot
Match: A0A6H5KU29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU29_9PHAE)

HSP 1 Score: 282 bits (721), Expect = 5.900e-81
Identity = 145/225 (64.44%), Postives = 169/225 (75.11%), Query Frame = 1 
Query: 2143 ILAAPD----SRDGSTTALESLELSTASPIGKLPSEVESPPLNVKGVKASVFRREWEKAMREELDGHLKTGTFSSEEKIPQGRCSLSSK*VLSWKTNKQGRIEKFKARLVAQGFAQIQNMDFLHSSFPCPSPASIKTVLAVANEKGIPLRHRDVK*AYTHAPLKNRVWINCCDGCGDLSHTTAKAERAIYGLKQSGRESGYHAADTLVENGFEQSKADPCIFRKV 2805
            +L A D    S D    AL S ELST SPIGK PS+VESPP+ V GV  SV+R  WE+AMREE DGHL TGTFS  +  P+GR  +SSK   +WKTNK+G+IEKFKARLVA+GF+QI N+D+ HSS PCPS ASIK +LAVANEK + L H DVK A+THA L   V++    GCG+ SH   KAERAIYGLKQSGR+ GYHAADTLVENGFEQ KADPC+FRK+
Sbjct:   78 LLGAEDLVLNSPDAFARALASTELSTESPIGKRPSDVESPPMTVAGVNKSVYREGWEQAMREEFDGHLGTGTFSFVDVTPEGRRPVSSKCRFTWKTNKEGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKM 302
[Close]
BLAST of mRNA_P-fluviatile_contig7.13513.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 2.320e-78
Identity = 145/225 (64.44%), Postives = 172/225 (76.44%), Query Frame = 1 
Query: 2134 VGRILAAPDSRDGSTTALESLELSTASPIGKLPSEVESPPLNVKGVKASVFRREWEKAMREELDGHLKTGTFSSEEKIPQGRCSLSSK*VLSWKTNKQGRIEKFKARLVAQGFAQIQNMDFLHSSFPCPSPASIKTVLAVANEKGIPLRHRDVK*AYTHAPLKNRVWINCCDGCGDLSHTTAKAERAIYGLKQSGRESGYHAADTLVENGFEQSKADPCIFRKVV 2808
            +G ++   +S D   TAL S ELS  SPIGK PS+VE+PP+ V GV  SV+R  WE+AMREE +GHL TGTFS  +  P+GR  +SSK   SWKTNK+G+I+ FKARLVA+GF+QI N+D+ HSS PCPS ASIK +LAVANEKG+ L H DVK AYTHA L   V++    GCGD SH  AKAERAIYGLKQSGR+ GYHAADTLVENGFEQ KADPC+FRK+V
Sbjct:  253 LGAVVLMLNSPDAFETALASHELSE-SPIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMV 476
[Close]
BLAST of mRNA_P-fluviatile_contig7.13513.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 3.520e-75
Identity = 145/225 (64.44%), Postives = 171/225 (76.00%), Query Frame = 1 
Query: 2134 VGRILAAPDSRDGSTTALESLELSTASPIGKLPSEVESPPLNVKGVKASVFRREWEKAMREELDGHLKTGTFSSEEKIPQGRCSLSSK*VLSWKTNKQGRIEKFKARLVAQGFAQIQNMDFLHSSFPCPSPASIKTVLAVANEKGIPLRHRDVK*AYTHAPLKNRVWINCCDGCGDLSHTTAKAERAIYGLKQSGRESGYHAADTLVENGFEQSKADPCIFRKVV 2808
            +G +    +S D   TAL S ELS  SPIGK PS+VE+PP+ V GV  SV+R  WE+AMREE +GHL TGTFS  +  P+GR  +SSK   SWKTNK+G+I+ FKARLVA+GF+QI N+D+ HSS PCPS ASIK +LAVANEKG+ L H DVK AYTHA L   V++    GCGD SH  AKAERAIYGLKQSGR+ GYHAADTLVENGFEQ KADPC+FRK+V
Sbjct:  699 LGTVDLMLNSPDAFETALASHELSE-SPIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMV 922
[Close]
BLAST of mRNA_P-fluviatile_contig7.13513.1 vs. uniprot
Match: A0A6H5KVP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP5_9PHAE)

HSP 1 Score: 265 bits (676), Expect = 3.570e-75
Identity = 139/225 (61.78%), Postives = 167/225 (74.22%), Query Frame = 1 
Query: 2134 VGRILAAPDSRDGSTTALESLELSTASPIGKLPSEVESPPLNVKGVKASVFRREWEKAMREELDGHLKTGTFSSEEKIPQGRCSLSSK*VLSWKTNKQGRIEKFKARLVAQGFAQIQNMDFLHSSFPCPSPASIKTVLAVANEKGIPLRHRDVK*AYTHAPLKNRVWINCCDGCGDLSHTTAKAERAIYGLKQSGRESGYHAADTLVENGFEQSKADPCIFRKVV 2808
            VG +L +PD  +   TAL S + S  SPIGK PS+VE PP+ V GV  SV+R  WE+AMREE  GHL T TFS  +  P+ R  +SSK    WKTNK+G+I+KFKARLVA+GF+QI N+D+ HSS PCPS ASIK +LAVANEKG+ L H DVK AYTHA L   +++    GCG+ SH   +AERAIYGLKQSGR+ GYHAADTLVENGFEQ KADPC+FRK+V
Sbjct:   43 VGLMLNSPDPFE---TALASHKQSE-SPIGKRPSDVEPPPMTVAGVAKSVYREGWEQAMREEFKGHLGTRTFSFIDGAPKERRPVSSKWCFCWKTNKEGKIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLHHWDVKQAYTHATLDEEIFLRLPAGCGEKSHKIVQAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMV 263
[Close]
BLAST of mRNA_P-fluviatile_contig7.13513.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 1.170e-74
Identity = 145/225 (64.44%), Postives = 171/225 (76.00%), Query Frame = 1 
Query: 2134 VGRILAAPDSRDGSTTALESLELSTASPIGKLPSEVESPPLNVKGVKASVFRREWEKAMREELDGHLKTGTFSSEEKIPQGRCSLSSK*VLSWKTNKQGRIEKFKARLVAQGFAQIQNMDFLHSSFPCPSPASIKTVLAVANEKGIPLRHRDVK*AYTHAPLKNRVWINCCDGCGDLSHTTAKAERAIYGLKQSGRESGYHAADTLVENGFEQSKADPCIFRKVV 2808
            +G +    +S D   TAL S ELS  SPIGK PS+VE+PP+ V GV  SV+R  WE+AMREE +GHL TGTFS  +  P+GR  +SSK   SWKTNK+G+I+ FKARLVA+GF+QI N+D+ HSS PCPS ASIK +LAVANEKG+ L H DVK AYTHA L   V++    GCGD SH  AKAERAIYGLKQSGR+ GYHAADTLVENGFEQ KADPC+FRK+V
Sbjct: 1078 LGTVDLMLNSPDAFETALASHELSE-SPIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMV 1301
[Close]
BLAST of mRNA_P-fluviatile_contig7.13513.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 1.250e-74
Identity = 145/225 (64.44%), Postives = 171/225 (76.00%), Query Frame = 1 
Query: 2134 VGRILAAPDSRDGSTTALESLELSTASPIGKLPSEVESPPLNVKGVKASVFRREWEKAMREELDGHLKTGTFSSEEKIPQGRCSLSSK*VLSWKTNKQGRIEKFKARLVAQGFAQIQNMDFLHSSFPCPSPASIKTVLAVANEKGIPLRHRDVK*AYTHAPLKNRVWINCCDGCGDLSHTTAKAERAIYGLKQSGRESGYHAADTLVENGFEQSKADPCIFRKVV 2808
            +G +    +S D   TAL S ELS  SPIGK PS+VE+PP+ V GV  SV+R  WE+AMREE +GHL TGTFS  +  P+GR  +SSK   SWKTNK+G+I+ FKARLVA+GF+QI N+D+ HSS PCPS ASIK +LAVANEKG+ L H DVK AYTHA L   V++    GCGD SH  AKAERAIYGLKQSGR+ GYHAADTLVENGFEQ KADPC+FRK+V
Sbjct: 1098 LGTVDLMLNSPDAFETALASHELSE-SPIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMV 1321
[Close]
BLAST of mRNA_P-fluviatile_contig7.13513.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 1.330e-74
Identity = 145/225 (64.44%), Postives = 171/225 (76.00%), Query Frame = 1 
Query: 2134 VGRILAAPDSRDGSTTALESLELSTASPIGKLPSEVESPPLNVKGVKASVFRREWEKAMREELDGHLKTGTFSSEEKIPQGRCSLSSK*VLSWKTNKQGRIEKFKARLVAQGFAQIQNMDFLHSSFPCPSPASIKTVLAVANEKGIPLRHRDVK*AYTHAPLKNRVWINCCDGCGDLSHTTAKAERAIYGLKQSGRESGYHAADTLVENGFEQSKADPCIFRKVV 2808
            +G +    +S D   TAL S ELS  SPIGK PS+VE+PP+ V GV  SV+R  WE+AMREE +GHL TGTFS  +  P+GR  +SSK   SWKTNK+G+I+ FKARLVA+GF+QI N+D+ HSS PCPS ASIK +LAVANEKG+ L H DVK AYTHA L   V++    GCGD SH  AKAERAIYGLKQSGR+ GYHAADTLVENGFEQ KADPC+FRK+V
Sbjct: 1241 LGTVDLMLNSPDAFETALASHELSE-SPIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMV 1464
[Close]
BLAST of mRNA_P-fluviatile_contig7.13513.1 vs. uniprot
Match: A0A6H5JU90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU90_9PHAE)

HSP 1 Score: 272 bits (695), Expect = 5.470e-74
Identity = 142/225 (63.11%), Postives = 170/225 (75.56%), Query Frame = 1 
Query: 2134 VGRILAAPDSRDGSTTALESLELSTASPIGKLPSEVESPPLNVKGVKASVFRREWEKAMREELDGHLKTGTFSSEEKIPQGRCSLSSK*VLSWKTNKQGRIEKFKARLVAQGFAQIQNMDFLHSSFPCPSPASIKTVLAVANEKGIPLRHRDVK*AYTHAPLKNRVWINCCDGCGDLSHTTAKAERAIYGLKQSGRESGYHAADTLVENGFEQSKADPCIFRKVV 2808
            V  +L  PD+ +   TAL S ELS  SPIGK PS+VE+PP+ V GV  SV+R  WE+AMREE +GHL TGTFS  +  P+GR  +SSK   +WKTN++G+I+  KARLVA+G +QI N+D+ HSS PCPS ASIK +LAVANEKG+ L H DVK AYTHA L   V++    GCGD SH  AKAERAIYGLKQSGR+ GYHAADTLVENGFEQ KADPC+FRK+V
Sbjct:  363 VDLMLNTPDAFE---TALTSHELSE-SPIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFNWKTNQEGKIDTLKARLVARGVSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMV 583
[Close]
BLAST of mRNA_P-fluviatile_contig7.13513.1 vs. uniprot
Match: A0A6H5JZH7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH7_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 6.340e-74
Identity = 139/225 (61.78%), Postives = 163/225 (72.44%), Query Frame = 1 
Query: 2134 VGRILAAPDSRDGSTTALESLELSTASPIGKLPSEVESPPLNVKGVKASVFRREWEKA-MREELDGHLKTGTFSSEEKIPQGRCSLSSK*VLSWKTNKQGRIEKFKARLVAQGFAQIQNMDFLHSSFPCPSPASIKTVLAVANEKGIPLRHRDVK*AYTHAPLKNRVWINCCDGCGDLSHTTAKAERAIYGLKQSGRESGYHAADTLVENGFEQSKADPCIFRKV 2805
            +G +    +S D   T L S ELS  SPIGK  SEVE PP+ V GV  SV+R  WE+A MREE +GHL TGTFS  +  P GR   SSK   SWKTNK+G++EKFKAR VA+GF+Q  N+D+ HSS PCPS ASIK +LAVANEKG+ L H DVK AYT A L  +V++    GCG+ SH T KA+RAIYGLKQSGR+  YHAADTLVENGFEQ KADPC+FRKV
Sbjct:  160 LGTVDLMLNSPDAFETTLASPELSE-SPIGKRSSEVEPPPMTVAGVAKSVYRDGWEQAAMREEFEGHLDTGTFSFVDGAPGGRRPGSSKWCFSWKTNKEGKMEKFKARPVARGFSQFPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTQATLDEKVFLKLAAGCGEKSHKTVKADRAIYGLKQSGRQWRYHAADTLVENGFEQCKADPCVFRKV 383
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFJ3_9PHAE5.450e-8163.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KU29_9PHAE5.900e-8164.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE2.320e-7864.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE3.520e-7564.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KVP5_9PHAE3.570e-7561.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZQ8_9PHAE1.170e-7464.44Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.250e-7464.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.330e-7464.44Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JU90_9PHAE5.470e-7463.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZH7_9PHAE6.340e-7461.78Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:1081719..1085691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size3068
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13513.1prot_P-fluviatile_contig7.13513.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 1084007..1084408 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817120.4901178-UTR-P-fluviatile_contig7:1081718..10827221622817120.4901178-UTR-P-fluviatile_contig7:1081718..1082722Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1081719..1082722 +
1693571210.088167-UTR-P-fluviatile_contig7:1081718..10827221693571210.088167-UTR-P-fluviatile_contig7:1081718..1082722Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1081719..1082722 +
1622817120.5025914-UTR-P-fluviatile_contig7:1082880..10832561622817120.5025914-UTR-P-fluviatile_contig7:1082880..1083256Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1082881..1083256 +
1693571210.0977976-UTR-P-fluviatile_contig7:1082880..10832561693571210.0977976-UTR-P-fluviatile_contig7:1082880..1083256Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1082881..1083256 +
1622817120.5154483-UTR-P-fluviatile_contig7:1084003..10840061622817120.5154483-UTR-P-fluviatile_contig7:1084003..1084006Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1084004..1084006 +
1693571210.1076462-UTR-P-fluviatile_contig7:1084003..10840061693571210.1076462-UTR-P-fluviatile_contig7:1084003..1084006Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1084004..1084006 +
1622817120.5416737-UTR-P-fluviatile_contig7:1084408..10856911622817120.5416737-UTR-P-fluviatile_contig7:1084408..1085691Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1084409..1085691 +
1693571210.1334808-UTR-P-fluviatile_contig7:1084408..10856911693571210.1334808-UTR-P-fluviatile_contig7:1084408..1085691Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1084409..1085691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817120.5265179-CDS-P-fluviatile_contig7:1084006..10844081622817120.5265179-CDS-P-fluviatile_contig7:1084006..1084408Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1084007..1084408 +
1693571210.122795-CDS-P-fluviatile_contig7:1084006..10844081693571210.122795-CDS-P-fluviatile_contig7:1084006..1084408Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1084007..1084408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13513.1

>prot_P-fluviatile_contig7.13513.1 ID=prot_P-fluviatile_contig7.13513.1|Name=mRNA_P-fluviatile_contig7.13513.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=134bp
MTSMLGGNANYPEWLPTIAFAGTRERSGFVCSMFSSGGLVEGVDPVEEII
GGIDDNGFGSPSEGEAIPLPKLTGSAATLAKMQGVKVRHVPVRSAAQKTK
SGEMWMPAGQANVPGAPRARGCRQQQQQQQLQQ*
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mRNA from alignment at P-fluviatile_contig7:1081719..1085691+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13513.1 ID=mRNA_P-fluviatile_contig7.13513.1|Name=mRNA_P-fluviatile_contig7.13513.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3973bp|location=Sequence derived from alignment at P-fluviatile_contig7:1081719..1085691+ (Porterinema fluviatile SAG_2381)
TAGGCTGGGCGCCCCGCCCTCTCTCCCGCTTTCTTGTCGCCTCCCCCTCA
ACAGCTCAGATTTTTACATGGCCTAGAGTATGCGTCCATAAATATGTAAC
TGGTAGCCCCTTGGGCGATGCAACCTTCGGCACAAGAGTGAACACCTTTC
CTTGCGTACATGGAGGAGTCCACTTTGGTATCGAGACGGTAGAGTGAGAT
GCAACAAGAGGAAGATCAGATCGCAAGTAGCGGGGCGTGATCCATCGCTG
TCATGGATACGGCAAAGCGGACACTTCCCATCCGATGTCGAAGCCCATGA
CGTTGCCGTGAGCCTCAGCCTGAGTGCGGGCCGAGTCGAATACTAGGCGC
ATGTACACTCGTCCTGGAAACGAATGTGTCGGCGAGGGATGTATCGTCGA
GCAAGCGGGGAGAGATGGGTGACAACGGGCATTTTTGTGCATCGTCAGAC
TAGACCATCCAACTCGCGCAGTGGGCTGTTCGCTTGGATAAATTCGTGTT
TCTCGTGTGAAAGCCTTGTACCCGGACGCCAGCGATCCCCCTGGAGCTCA
CACGACGCCTCGGCTCACAAGTCGTGTGGGTAGCGGAGTGCTGTGGGATG
CACATCATTTGCGGAAGAACGCCGCCTCGGCGGCATGAACACGAGCACGG
AGCGCTCAAGACGTAGCGCAGTACCGGAAGAGGGTGGCGGGTGAAGCTCC
ATGCCAGCGGCAGAGGCGATCCCCAGCCATGGTAGCAGCAGCAGCAGCAG
CAGCAGCTCAGCTCCGGGGGAAGGGTCGCGGGAAGAGGACCGATTCGTTA
CTCCAGCCGAGCCTTTTTTTGCTGGGCAGCTGAACGGCATCGAGGCGGTC
AGCTGGGAGTCGACGGCATACATGGGGTTTGTTTGCCGATGGAGAGGGCG
AGGGAGGTGGAAATGCGAGGGCTGGTCTCAACGACGAGGAAGAAATTGTC
GACGCCGCCGGACACTTGGCAGGCGAAGAGTTTGAAGCCTTTTTGTACCT
GAAGGTGGGCATCGATCGCGTTCATTGATATTTATTTCCTCTGTGATCAC
GTCCGCTTCGCTCCTCTCTGCTTCTCGTCGATCACATGTGCAGTCGCGTT
GTGATATCGAGGTTTCGCCGCTGAGTCTATTCCTTTGTCCCGTTCGCTTC
CAAACGCTGCAGGCCCTTCCAAAAGTTTCAGTCGGGAATTTTTTCTACAA
TGGCAGCGACAGCTTCAGCTCTTTGGAATCCATGAACCAAAGTACCCACG
ACGAGCGATGGCTCCTTGTGTTCAGTTTGCTGGGCTCGTCGTCATGCTTG
ACATTTTTCACGCGATGCCGAGGCTTAAAAAGCGCATCCTCAAAAGCCAC
GGTGCGTGCCGCACATATCTGACACGTTTGAGAGACGCATTTTTCATGGT
GAATGCAGAGGATCTCGGTGCCGTTGAAGCGGAGCTCATGCACGCCGGGA
TGAGCAGAGACGAGCTTGAAGCGAAAAAGGTCGAGGATTGGCCTTTCTTC
CTCGCACGGTGCCTTTTCTTCCTCGAACGGCGCCGAAGGTGAGCCGAATG
ATCGTCGGTACCCGACGGTTTACTCGCTGAGGCGTGGGGTCGAGCGTATT
TCCGAATCGAGTTCGCCGCTTTCGGAGCTTGGTCCACTGCCATTTGACTG
CTGGTTTGGTTTCCGCCCAGTGCTGTCTCTGTCTCGGTAGACAGGATGAT
CTCGCCTCAAGAGGAACTTGCCAAGCGCTTCGACTTCGTCAACAATGTGT
ATGATTGGCTCTCGATAACAAGACGAAGCAGCCGCTCTTGCGGCCCGAAG
CGCTGGAGGTGGTTAAGCGTCTCCGTCTCCACATCTTTGAAGATTGCTGC
AGTGACGACCCGAACCATTCACTGTATTTCGAGGCGGGTAAGGACATCGG
GACGCGCTGCACGAAGTATCGCTGTGGCCGAGACACGAATGATCTCGAGG
GGTACCATTTTCATGTGCGCTTGTTGACCCATGGGTGGTGTCGCCCAGGC
TCGCCCATCTCCTCCTTATCGAGCACAATTGCAGATGTAATCTACGACAG
AGCATGAAAAATCGAGGGTTGATCGAGATCGTGGGAGGATAAAGGACCAG
CAGCTGCTGGAGGCCACTCAAGTACCCTCCCCATTGATAGGTGTCGTTCG
ACGAAAAGTCGTGCACTGACACGATTTGATGCTTTGTCTTGCGCCAGATC
TGGAAATAGCTCATGTAAACGTCACGTCATCACACACCTCTCTCCCCTGT
GATGCCCCCCTTTTTTGTCGCTCTCCTGCTCACAGAGGATGACTTCCATG
TTGGGCGGCAACGCGAATTACCCCGAATGGCTGCCGACAATCGCCTTCGC
CGGCACGAGGGAGCGCAGCGGGTTTGTCTGCAGCATGTTTTCGTCTGGCG
GGCTTGTCGAGGGAGTTGACCCGGTCGAAGAAATCATAGGCGGGATCGAC
GACAACGGTTTCGGCTCCCCCTCCGAAGGAGAGGCGATTCCTCTCCCCAA
ACTGACAGGTTCGGCTGCCACTCTCGCGAAGATGCAGGGTGTGAAAGTGC
GGCACGTGCCAGTGAGGAGCGCCGCCCAGAAAACAAAATCTGGCGAGATG
TGGATGCCAGCGGGACAGGCAAACGTGCCGGGTGCTCCGAGAGCTCGAGG
ATGCCGCCAGCAGCAGCAACAGCAGCAATTGCAGCAATAGCAGCAGCAGC
GGCAGCAGCAGCGGCGATGACGGCGAGAGCGACGCGCAGGACGCCCCCGG
TGAGGCCGGAGGTGACAACGGCGGCAGCAGGAGCAACAGCAGTAGGAGCG
AGTCGGACATGCCGGCGCCCCGCGGGGGCGAGGCCCATCGACTTGGCTGG
CTTGACAGATAGCCCGAGATCGTCGCGAGTCGAACCAGGCCAAATCCCCC
AAGGAACCGCAAGTACACCATGAACCTCAAGGTCGCCGACGCCCTGCTCG
CCATCGCGGCCAAGTGGGCCCAGCAAACTCTGGTGGAGGAGGCCGCGGAA
GATGACCTCATCGAACGTGAGGAGATCGACGACCTCCAGTGGGAAGAATC
CTCGCCGCCCCCGACTCGCGGGACGGTTCTACGACAGCTTTGGAGTCCCT
CGAGCTAAGTACCGCATCCCCGATTGGGAAACTCCCGAGTGAAGTAGAGT
CTCCCCCCTTAAACGTGAAAGGGGTTAAAGCGTCGGTGTTCAGGAGGGAA
TGGGAGAAGGCTATGCGTGAAGAGTTGGATGGGCACCTGAAGACGGGGAC
TTTTTCTTCCGAAGAGAAGATTCCGCAGGGACGTTGTTCATTGAGTTCGA
AGTGAGTTCTTAGTTGGAAGACGAACAAGCAGGGAAGGATTGAGAAGTTT
AAGGCACGTCTAGTTGCTCAGGGTTTTGCACAGATTCAGAACATGGACTT
CCTCCACTCGTCGTTCCCGTGCCCGTCGCCCGCGTCTATCAAGACGGTGC
TTGCTGTAGCGAACGAGAAGGGCATCCCGCTGCGCCACAGGGATGTGAAG
TAGGCATACACTCACGCCCCGTTAAAGAATAGGGTATGGATTAATTGTTG
TGATGGTTGCGGCGACCTCTCACACACCACCGCGAAAGCAGAGCGTGCCA
TTTACGGCCTGAAGCAGAGCGGACGTGAGTCGGGGTACCACGCTGCAGAC
ACCTTGGTGGAGAACGGGTTCGAGCAGAGCAAGGCGGATCCATGCATTTT
CCGCAAGGTGGTCACGGGATCGTAGTGATGCTCATTGCGATATACGTCGA
CGACATATCGGTGGCAGGGTCAGAGAAGGACTGCAGTGAGCTGTTGACTT
CTCTGAGCAAGAAGTTCCCCACCAAGGACTTGGGGGGGTGCGAATGGTTT
GATGGGTGTTGCATCGAGAGAAACGCAGTGGCAGGCACCCTTAAGGTCAG
CCAGACTGCCTTCATCGACAGCATCGTTAATCGCTTTGACGTGCAGTCGA
CGTCCCCCATCCCCATGTCCATC
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:1081719..1085691+

>mRNA_P-fluviatile_contig7.13513.1 ID=mRNA_P-fluviatile_contig7.13513.1|Name=mRNA_P-fluviatile_contig7.13513.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=804bp|location=Sequence derived from alignment at P-fluviatile_contig7:1081719..1085691+ (Porterinema fluviatile SAG_2381)
ATGACTTCCATGTTGGGCGGCAACGCGAATTACCCCGAATGGCTGCCGAC
AATCGCCTTCGCCGGCACGAGGGAGCGCAGCGGGTTTGTCTGCAGCATGT
TTTCGTCTGGCGGGCTTGTCGAGGGAGTTGACCCGGTCGAAGAAATCATA
GGCGGGATCGACGACAACGGTTTCGGCTCCCCCTCCGAAGGAGAGGCGAT
TCCTCTCCCCAAACTGACAGGTTCGGCTGCCACTCTCGCGAAGATGCAGG
GTGTGAAAGTGCGGCACGTGCCAGTGAGGAGCGCCGCCCAGAAAACAAAA
TCTGGCGAGATGTGGATGCCAGCGGGACAGGCAAACGTGCCGGGTGCTCC
GAGAGCTCGAGGATGCCGCCAGCAGCAGCAACAGCAGCAATTGCAGCAAT
AGATGACTTCCATGTTGGGCGGCAACGCGAATTACCCCGAATGGCTGCCG
ACAATCGCCTTCGCCGGCACGAGGGAGCGCAGCGGGTTTGTCTGCAGCAT
GTTTTCGTCTGGCGGGCTTGTCGAGGGAGTTGACCCGGTCGAAGAAATCA
TAGGCGGGATCGACGACAACGGTTTCGGCTCCCCCTCCGAAGGAGAGGCG
ATTCCTCTCCCCAAACTGACAGGTTCGGCTGCCACTCTCGCGAAGATGCA
GGGTGTGAAAGTGCGGCACGTGCCAGTGAGGAGCGCCGCCCAGAAAACAA
AATCTGGCGAGATGTGGATGCCAGCGGGACAGGCAAACGTGCCGGGTGCT
CCGAGAGCTCGAGGATGCCGCCAGCAGCAGCAACAGCAGCAATTGCAGCA
ATAG
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