mRNA_P-fluviatile_contig7.13491.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13491.1
Unique NamemRNA_P-fluviatile_contig7.13491.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig7.13491.1 vs. uniprot
Match: A0A6H5L6R8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R8_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.180e-39
Identity = 84/134 (62.69%), Postives = 87/134 (64.93%), Query Frame = 3
Query:    3 IPLHALADPQMKAFFDFANICLPGDNHPAEHIPFMLSKE---------------------------------------VVQRVLKIAMLKKSMSARDIVGQVNDTLSEEFNLRASRCIGFMLDGCAANLLALYS 287
            IPLHAL DPQMKAFFDFANI  PG +H AEH+PF+L KE                                       VVQRVLKIAMLKKSMSARDIVGQVNDTL EEFNLRASRCIGFMLDGCAANLLAL S
Sbjct:   33 IPLHALEDPQMKAFFDFANIRAPGRSHLAEHVPFLLRKELDTTLSELGNGNYTVCFDATPYRCECFGIGLRFINQNGQVVQRVLKIAMLKKSMSARDIVGQVNDTLGEEFNLRASRCIGFMLDGCAANLLALDS 166          
BLAST of mRNA_P-fluviatile_contig7.13491.1 vs. uniprot
Match: A0A6H5JN03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN03_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 7.440e-37
Identity = 78/134 (58.21%), Postives = 83/134 (61.94%), Query Frame = 3
Query:    3 IPLHALADPQMKAFFDFANICLPGDNHPAEHIPFMLSKE---------------------------------------VVQRVLKIAMLKKSMSARDIVGQVNDTLSEEFNLRASRCIGFMLDGCAANLLALYS 287
            IPLHAL DPQMK FFDFANIC+PGD+H A+HIP +L  E                                       VVQ VLKI ML KSMSARDIVGQVNDTLSEEF L+ASRCIGFMLDGC ANLLAL S
Sbjct:   33 IPLHALGDPQMKVFFDFANICMPGDSHLAKHIPVLLRTELDTALSELGDGNYTVCFDPTPYRCECFGIELRFIDQKGQVVQHVLKIEMLTKSMSARDIVGQVNDTLSEEFCLKASRCIGFMLDGCTANLLALDS 166          
BLAST of mRNA_P-fluviatile_contig7.13491.1 vs. uniprot
Match: A0A6H5JGW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW7_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 2.240e-31
Identity = 66/95 (69.47%), Postives = 67/95 (70.53%), Query Frame = 3
Query:    3 IPLHALADPQMKAFFDFANICLPGDNHPAEHIPFMLSKEVVQRVLKIAMLKKSMSARDIVGQVNDTLSEEFNLRASRCIGFMLDGCAANLLALYS 287
            IPLHALADPQMKAFFDFANI LPGDNH AEHIPF+L KEV                       NDTL EEFNLRASRCIGFMLDGCAANLLAL S
Sbjct:   26 IPLHALADPQMKAFFDFANIWLPGDNHLAEHIPFLLKKEV-----------------------NDTLGEEFNLRASRCIGFMLDGCAANLLALDS 97          
BLAST of mRNA_P-fluviatile_contig7.13491.1 vs. uniprot
Match: A0A6H5KX97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX97_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 4.010e-18
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 3
Query:    3 IPLHALADPQMKAFFDFANICLPGDNHPAEHIPFMLSKEV 122
            IPLHALADPQMKAFFDFANICLPGDNH AEHIPF+L KE+
Sbjct:   26 IPLHALADPQMKAFFDFANICLPGDNHLAEHIPFLLKKEL 65          
BLAST of mRNA_P-fluviatile_contig7.13491.1 vs. uniprot
Match: A0A6H5K4R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R7_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 4.580e-18
Identity = 43/93 (46.24%), Postives = 63/93 (67.74%), Query Frame = 3
Query:    3 IPLHALADPQMKAFFDFANICLPGDNHPAEHIPFMLSKEVVQRVLKIAMLKKSMSARDIVGQVNDTLSEEFNLRASRCIGFMLDGCAANLLAL 281
            +PL+AL +P   AF    ++ LP   H AEHIP +L +E  QRVL+++MLKKSM+A DI G+VN  ++ E++L  ++C   + D  AANLLA+
Sbjct:  342 VPLNALGNPVFGAFLAHLDVDLPSAGHLAEHIPLILEEEAAQRVLRLSMLKKSMTADDIAGEVNRIVTHEYSLDPNKCQAIIGDSGAANLLAM 434          
BLAST of mRNA_P-fluviatile_contig7.13491.1 vs. uniprot
Match: A0A6H5JJR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR7_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.870e-14
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 3
Query:    3 IPLHALADPQMKAFFDFANICLPGDNHPAEHIPFMLSKEVVQRVLKIAMLKKSMSARDIVGQVNDTLSEEFNLRASRCIGFMLDGCAANLLAL 281
            +PL+ L +    AF    ++ LP   H AEHIP +L +E   RV ++ MLKKSM A DI G+VN  ++ E++L  ++C   + D CAANLLA+
Sbjct:  440 VPLNVLGNRVFGAFLAHLDVDLPSAGHLAEHIPLILEEE---RVRRLGMLKKSMMADDIAGEVNRIVTHEYSLDPNKCRAIIGDSCAANLLAM 529          
BLAST of mRNA_P-fluviatile_contig7.13491.1 vs. uniprot
Match: A0A6H5L3U5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3U5_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 4.780e-11
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 3
Query:    3 IPLHALADPQMKAFFDFANICLPGDNHPAEHIPFMLSKEV 122
            IPLHAL DPQMKAFFDFANI  PG +H A+H+PF+L KEV
Sbjct:  274 IPLHALEDPQMKAFFDFANIRAPGRSHLAKHVPFLLRKEV 313          
BLAST of mRNA_P-fluviatile_contig7.13491.1 vs. uniprot
Match: A0A6H5KEZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ7_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.270e-10
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 3
Query:  117 EVVQRVLKIAMLKKSMSARDIVGQVNDTLSEEFNLRASRCIGFMLDGCAANLLAL 281
            E+ QR+L ++ML KSM  +DI G+VN+ L+  F L  +RC+GFMLDGCAAN+ AL
Sbjct:   68 EICQRLLSLSMLAKSMDFKDIFGEVNNVLAR-FGLDPARCVGFMLDGCAANMKAL 121          
BLAST of mRNA_P-fluviatile_contig7.13491.1 vs. uniprot
Match: A0A6H5K2F8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2F8_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.440e-9
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 3
Query:    9 LHALADPQMKAFFDFANICLPGDNHPAEHIPFMLSKEVVQRVLKIAMLKKSMSARDI 179
            L+AL +P  + F    N+ LP   H AEHIP +L +EV QRVL+++MLKKSM+A DI
Sbjct:  250 LNALGNPVFEKFLAHVNVNLPSSGHLAEHIPLILEEEVAQRVLRLSMLKKSMTADDI 306          
BLAST of mRNA_P-fluviatile_contig7.13491.1 vs. uniprot
Match: A0A6H5JD81_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD81_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 2.850e-9
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 3
Query:  111 SKEVVQRVLKIAMLKKSMSARDIVGQVNDTLSEEFNLRASRCIGFMLDGCAANLLAL 281
            S +V QRVL+++MLKKSM+A DI G+VN  ++ E+ L   +C   M D CAANLLA+
Sbjct:  276 SGQVAQRVLRLSMLKKSMTASDIAGEVNRIVTHEYGLDPDKCRAIMGDSCAANLLAM 332          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5L6R8_9PHAE1.180e-3962.69Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JN03_9PHAE7.440e-3758.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGW7_9PHAE2.240e-3169.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX97_9PHAE4.010e-1890.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4R7_9PHAE4.580e-1846.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJR7_9PHAE3.870e-1443.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3U5_9PHAE4.780e-1175.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEZ7_9PHAE2.270e-1056.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2F8_9PHAE1.440e-952.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD81_9PHAE2.850e-952.63Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:733754..734590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size255
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13491.1prot_P-fluviatile_contig7.13491.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 733754..734558 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817108.1410182-CDS-P-fluviatile_contig7:733753..7339211622817108.1410182-CDS-P-fluviatile_contig7:733753..733921Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 733754..733921 -
1693571151.1073616-CDS-P-fluviatile_contig7:733753..7339211693571151.1073616-CDS-P-fluviatile_contig7:733753..733921Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 733754..733921 -
1622817108.1516604-CDS-P-fluviatile_contig7:734471..7345581622817108.1516604-CDS-P-fluviatile_contig7:734471..734558Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 734472..734558 -
1693571151.1184216-CDS-P-fluviatile_contig7:734471..7345581693571151.1184216-CDS-P-fluviatile_contig7:734471..734558Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 734472..734558 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817108.1633582-UTR-P-fluviatile_contig7:734558..7345901622817108.1633582-UTR-P-fluviatile_contig7:734558..734590Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 734559..734590 -
1693571151.1312296-UTR-P-fluviatile_contig7:734558..7345901693571151.1312296-UTR-P-fluviatile_contig7:734558..734590Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 734559..734590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13491.1

>prot_P-fluviatile_contig7.13491.1 ID=prot_P-fluviatile_contig7.13491.1|Name=mRNA_P-fluviatile_contig7.13491.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=85bp
MKAFFDFANICLPGDNHPAEHIPFMLSKEVVQRVLKIAMLKKSMSARDIV
GQVNDTLSEEFNLRASRCIGFMLDGCAANLLALYS
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mRNA from alignment at P-fluviatile_contig7:733754..734590-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13491.1 ID=mRNA_P-fluviatile_contig7.13491.1|Name=mRNA_P-fluviatile_contig7.13491.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=837bp|location=Sequence derived from alignment at P-fluviatile_contig7:733754..734590- (Porterinema fluviatile SAG_2381)
GCATCCCGCTTCATGCCCTTGCCGACCCGCAGATGAAGGCCTTCTTCGAC TTCGCGAACATCTGCTTGCCGGGAGACAATCATCCCGCCGAGCACATCCC GTTCATGCTGAGTAAAGAGGTGCGTATAGCTGCTCGACTGGTCGAACCCC CTTTAATGCCCCAAATTTTTTTCAAGTGGGTTTTAACTGCTGCATAACTG AATGGCGCGAGGTAGCTGTTTTTTTTTTTTTTTGGGAGGAGTTGCGTGTT GCGCGCAAACCACATTCGACTGCCTCAGCATTCAGTTACGCTTTCCTTTT GTCTTTTTACTTCCCTCTGCATTTTTGAATATCATCAGCTTGACACGACC CTGTCGGAGCTTGGGAACGGGAATCACACGGTGTGCTTCGACGCCACGCC CTACCGTTGCGAGTGCTTCGCCATCGGGCTACGATTCATCGACCAGAAAG GCCAGCTACAGAAAATGATTGCGTTCAATTTTACACACCGCCGCACCGTT ATCGCATGCATACGCCGAGCACAGCCGTCGGCAGATCGCACCAGCACAAT AGAGCAAGGTTTCATCGGTGCTTTTCAATCTCACTCTCAATTATTATCTC ACGACGTCATCCCCGGCCCCTCCCCCCGCTCCCCACCACTCCACGCTCTC CCTCGTTTCCTGGCAGCAGGTGGTGCAGCGTGTCCTCAAAATTGCGATGC TGAAGAAGTCTATGTCGGCTCGAGACATCGTCGGCCAGGTCAACGACACC TTGAGCGAAGAGTTTAACCTGAGGGCGTCACGCTGCATCGGCTTCATGCT CGACGGCTGCGCGGCCAACCTGCTTGCTCTCTACTCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:733754..734590-

>mRNA_P-fluviatile_contig7.13491.1 ID=mRNA_P-fluviatile_contig7.13491.1|Name=mRNA_P-fluviatile_contig7.13491.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=510bp|location=Sequence derived from alignment at P-fluviatile_contig7:733754..734590- (Porterinema fluviatile SAG_2381)
ATGAAGGCCTTCTTCGACTTCGCGAACATCTGCTTGCCGGGAGACAATCA
TCCCGCCGAGCACATCCCGTTCATGCTGAGTAAAGAGATGAAGGCCTTCT
TCGACTTCGCGAACATCTGCTTGCCGGGAGACAATCATCCCGCCGAGCAC
ATCCCGTTCATGCTGAGTAAAGAGGTGGTGCAGCGTGTCCTCAAAATTGC
GATGCTGAAGAAGTCTATGTCGGCTCGAGACATCGTCGGCCAGGTCAACG
ACACCTTGAGCGAAGAGTTTAACCTGAGGGCGTCACGCTGCATCGGCTTC
ATGCTCGACGGCTGCGCGGCCAACCTGCTTGCTCTCTACTCCGTGGTGCA
GCGTGTCCTCAAAATTGCGATGCTGAAGAAGTCTATGTCGGCTCGAGACA
TCGTCGGCCAGGTCAACGACACCTTGAGCGAAGAGTTTAACCTGAGGGCG
TCACGCTGCATCGGCTTCATGCTCGACGGCTGCGCGGCCAACCTGCTTGC
TCTCTACTCC
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