mRNA_P-fluviatile_contig7.13484.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13484.1
Unique NamemRNA_P-fluviatile_contig7.13484.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig7.13484.1 vs. uniprot
Match: A0A6H5JI88_9PHAE (Myb-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI88_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.580e-15
Identity = 79/134 (58.96%), Postives = 88/134 (65.67%), Query Frame = 1 
Query:   37 GHGIQPQAPL--AAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVA-VVPTVPAHIVAANLSTQVRALLSRAPGAAGVAG--TAQWAEVLRLNPQLAAQVQAVL-RTDTTDTSKVEALAGLFSAIR 420
            GHGIQPQAPL  +AG           XXXXXXXXXXXXXXX          GVA   PT PA  +AANLS+QVRALLSRAP   G AG  T Q  E LRL+PQL A++QA + RTDTTD  KVEALA + SA+R
Sbjct:  851 GHGIQPQAPLPVSAGQQPLQQGGSVGXXXXXXXXXXXXXXXAPAGVALAAGGVAGAAPTSPAQNLAANLSSQVRALLSRAPNMPGAAGGSTNQVLEALRLHPQLTAKIQATIHRTDTTDAQKVEALASMLSAVR 984
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JI88_9PHAE2.580e-1558.96Myb-like domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:614763..618577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size915
Cds size477
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13484.1prot_P-fluviatile_contig7.13484.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 614763..618140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817107.689543-CDS-P-fluviatile_contig7:614762..6147991622817107.689543-CDS-P-fluviatile_contig7:614762..614799Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 614763..614799 +
1693571135.1556654-CDS-P-fluviatile_contig7:614762..6147991693571135.1556654-CDS-P-fluviatile_contig7:614762..614799Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 614763..614799 +
1622817107.7001874-CDS-P-fluviatile_contig7:615549..6157601622817107.7001874-CDS-P-fluviatile_contig7:615549..615760Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 615550..615760 +
1693571135.1701791-CDS-P-fluviatile_contig7:615549..6157601693571135.1701791-CDS-P-fluviatile_contig7:615549..615760Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 615550..615760 +
1622817107.7180002-CDS-P-fluviatile_contig7:616626..6167621622817107.7180002-CDS-P-fluviatile_contig7:616626..616762Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 616627..616762 +
1693571135.1811438-CDS-P-fluviatile_contig7:616626..6167621693571135.1811438-CDS-P-fluviatile_contig7:616626..616762Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 616627..616762 +
1622817107.729214-CDS-P-fluviatile_contig7:618047..6181401622817107.729214-CDS-P-fluviatile_contig7:618047..618140Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 618048..618140 +
1693571135.1911833-CDS-P-fluviatile_contig7:618047..6181401693571135.1911833-CDS-P-fluviatile_contig7:618047..618140Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 618048..618140 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817107.7405064-UTR-P-fluviatile_contig7:618140..6185771622817107.7405064-UTR-P-fluviatile_contig7:618140..618577Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 618141..618577 +
1693571135.2045755-UTR-P-fluviatile_contig7:618140..6185771693571135.2045755-UTR-P-fluviatile_contig7:618140..618577Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 618141..618577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13484.1

>prot_P-fluviatile_contig7.13484.1 ID=prot_P-fluviatile_contig7.13484.1|Name=mRNA_P-fluviatile_contig7.13484.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=159bp
HRQLQAAAQAVTGHGIQPQAPLAAGAAAAASAATAAATASSPVPTPAVAG
GGLVGAGAPAPGVAVVPTVPAHIVAANLSTQVRALLSRAPGAAGVAGTAQ
WAEVLRLNPQLAAQVQAVLRTDTTDTSKVEALAGLFSAIRPDAVTASAGV
AGAPGAGT*
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mRNA from alignment at P-fluviatile_contig7:614763..618577+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13484.1 ID=mRNA_P-fluviatile_contig7.13484.1|Name=mRNA_P-fluviatile_contig7.13484.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3815bp|location=Sequence derived from alignment at P-fluviatile_contig7:614763..618577+ (Porterinema fluviatile SAG_2381)
CACCGGCAGCTGCAGGCCGCGGCACAGGCCGTGACAGGTGCGTTTGTTCA
TGTGTGTAACAGGGAGAGGGATGGGGAGAAGAGTGGTGGGAGGGGGGAGA
GAGAGAGAGAGAGAGAGAGGTGGGGAGGGGAAGGAAGAGAGATGAAATAT
CTCTCTGCACGAACTATCTCAGGTGATGCGAGACCTGCTGTAGACAATGG
TCGGTTTCCGCGGTCGCGCACTTCGTCGAGATTGCTCTGACACTTGCACT
TGATGTGAACACCGCACATGGCGATGTATTTTGTGCTTGGTGGCGCTTTG
TCGTGCCGTGCCGTGCCGTGCCGTGCCGTGCCCTGCCTTGCCGTGCTTGA
CCGTGCCGTTTCGTGCCGTGCAGCGGTGTGCCAACAAATCACCGACCGTT
TGCGTGCCGCGCCGCGCCGTTTTACGCTGTACCGTACCGTACGGTGCAGC
GGTGTGCTGATACATCGCCGACCGTGCGGACTGTCCGCGGCAATGGCAAC
ATTTATGAGACTCGATAGTGGTTTAATGTATGCCGCAAGGCTTGAAACGA
CAACCACAACCACAACCACAACAACAACAACAACAACAACAACTTGCTCC
TCTACCGCGGCTAAGTGGCACTGCTGAACTGGAATTTGCGGTATGGTCGC
AGACATTCTTTTTGCTATCACACGACCCTTACTGTTTTGATGTTTTATCA
CCCATTTGAGAGAGGTGCATGCGCTATTTCTCATCATAAACGAGGCGAAA
TTACGTGCACAACCCCTCTCTCTCCTCATGTCCACAGGTCATGGGATTCA
GCCGCAGGCCCCCCTGGCGGCGGGGGCGGCGGCGGCGGCGTCGGCCGCCA
CCGCAGCTGCGACAGCATCGTCTCCGGTGCCTACTCCGGCGGTGGCCGGC
GGAGGGTTGGTGGGCGCCGGTGCGCCGGCACCCGGGGTGGCGGTCGTTCC
GACGGTGCCGGCACACATCGTAGCGGCTAACCTTTCTACGCAAGTCCGGT
GAGTGGGAGGGGGGGAAGGACGGAGGAAGGGCGGGAGGAAATGTGGGTCG
TAAGAGACAGACGGTAAGAGGGAGGGGAGGGAGGGAGGAAACGTGGGGGG
GTAAAAGACAGGCGGAGGCACGAGGGACGGAAGGAAGGCCGTGAGAGACA
TTCGTTGAGTGAGAGGGAGGGAGGGAGGGAGGAAGGGAGGAAAGGTGGAC
CGTAGAGATACAGGCGGTGAGTGAGATGGAGGGAGGGACGAAACGCGGGC
CACAAGAGATAGGTGAGGCTCAAGCAATATAGGACAAGGGAGGGAGGTAT
GTGTGGAGCAAAGGAAGAAGCCAAGGGGAGAGGGGGGCAACGAACGTAGG
CCAGCACTTGGACAAGAGATTTCATTTCCCCCCATCGATGGATGCTTGCA
CATGTACCGGGAGATATCGTTCCTCTACGTGATGTGTTTGGGTGGGGCTT
CACACCGGCACAGGTGCTGTGGGGTCGTGCGTCACACACCGTGAACGCTC
TCAATGCGTGTCGTGAGTGTCGAGAAAAGTTCAACTACGTGATGTCAAGG
TCGAGCGAGCGCCTCCCGAGCGTAGCCCGAGCTTGTAAAGCGCTCTCCGA
AGATCCCATGATGTAAACAAGTGTGCGTTGTCTCCATCAAGTTGTTTCTT
TGGTTTTGTTCAGGAATGTCTTGTATATTTTCAAGACATTCCGATCGCTT
CGTACCGGCAAGGATGGCAGTGCCCACACCGAGCTCGCTCCCTCATCGTT
TTTTTTCTTAAATAAATTCGTTTCTGTAGTTGATTAATTTTCTATCCATA
CCCGCTCCGCTCCCATGCCGTTCTCTGAACCTTTCAACACTGCCGATTTG
ATGTGCGTGTTCAGGGCGTTGCTTTCCCGGGCTCCGGGCGCCGCCGGGGT
TGCCGGTACAGCCCAGTGGGCGGAGGTTCTGCGACTGAACCCCCAGCTGG
CGGCTCAGGTCCAGGCCGTCCTCCGCACTGACACCACGGACACGTCAAAG
GTGTGTTAGCTTTCCTGCCTTTTTTGCTATTTTCCCTCGTTTCTTCGTGT
TTTCTCGTCCTTCACGTGATGAGTGCACGGATCCGTGGCACCAGCCCTTT
CCGAATGACTCGCTCATTATCTGGGCGCTTGCTTGCACGAGGACAAAATC
TGCGGTGCCCAAAGTCAGCTTTACGTTTCTCTCTTACGGCGTTTTACATT
CAAAGCATCCAAGGTGCCTCGGTCAGGTCGCTGGTGCCTCGGTCAGGTCG
TTGAATACAGATGAAATGCCGCCAACGCCGTCCAAATAGCTGGTTCCTAG
TGCAGCTACGTACGTCGAGTGTTGGCGGTTCTTCCGCTTGATCTTTCGCC
GTCGACCAAACCACGACCATGTTGCACGCGGTTGCACGCCTGTTTCTTTC
CTTCGACAGCCCCTTCGTCCCGATCCCCCGCCTCCCCCGGCCCCGCCCCT
CCCCCCACGCTCTCGAAAGAGATGCACCGGCCCGACGGCGCGGCATGGGT
CGGATTGGCGCCGGGTTGGCGACAGCACTTTTGAACGTTCGGCTGACGGC
GTCCCCTAGGCAACCAGGATACCGCCTTTTCTTTCTTGTCTTTAAGAGCG
GTACCCATGATGGTGGTGGAGGAAAACCATGTGTGGGGGGTGAAGAATTG
GGATCCGCACATCGGGCATGGTCGTGCCACGCTGTGTTGAAGTGGTGATG
AGCCCGCGACGCACTGCCGTAGTACATCCGTTGGCTGTCTCTGGGGCGAT
ATCAAAAGCGTATTTACTGCTGCTCAGTTGAGGCTTTCATGCGTGTGCAA
GGTCAGTAAGCCTTTGGCCGAAGATTCTTGGTCGGATGCTGCCCACCCTC
CATGCGACTCGCCGAATGCATCGCGGCGCTTCGCGCGCTTTGCGAGTACA
ACAGCCTTGGTCGGTGAAATCCCGGCAAGTCGCTGAGTCCCGGCCGAAAA
GGACGCGAGGTCTATGGCCTAACGACTACGGCATGCGTGAATCGAGTACA
TCCCCTCCGTCCCCACCCCAcCCCCACCCCCACCCCCACCCCCACCCCCA
ACCGCCCACGCCCGCGCGCGTGTGCTAGTACGAAACTGAAATCAAACCAA
TAGACCAGTCGGCGCTGACTGATTAAGGTTGGATGTTTGCTCCGATTTGA
TATCAGTTTCTGCAGTGCAGCAGCCTTTCTACCTGTCGTATTGCCCTTCG
AAAGCCCTTCCGTTCCCCCGTCCGCCCTCCCCTGCTTTCCCCGGCCCCCC
TCTACCCCCGTCCCTCGCGCCCGCACACAAATCAGGTGGAAGCGCTAGCT
GGTTTATTCAGCGCGATCCGGCCGGATGCCGTGACAGCTTCAGCTGGAGT
CGCCGGTGCACCGGGGGCGGGGACTTGATGGAAGCAAGCAAATTTCGAGG
AGTTATCGAGAGCACACATCGTAGGATCGAAAGGAGTGTACATGACCCCC
GCATGCCCGCAGCACGCGAGTCGAAAGCGGAGTGAGCGGGGCGGCAGGCA
GTGGGGGTGACGGGGGGTGTATGGGCAATGCAAGAGCTCTTGGCTCGATC
GACGACGAATGAATCGAGCGAGTGGATGAATCAGGGGCTGAGTGCACCGG
TTGAAGGTGGCACGGCGGCCGGCGGGTGGGTACCCTGTTATTGGGGATGC
TTCCTCGCGTTCCAAGGTGTAACGGCCATACTATCCTCCTTGGTCCCATG
ACACGATGGCGGCAGCAGTAAGGCTGTTTCGTTCAGCTCGTCGGCTCGTT
GCTCGTTTTGTTGGGTGTCGACTTCGTTTCGAATCACGGGACTCCTCCCC
CCGCCTTTGTATTGT
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:614763..618577+

>mRNA_P-fluviatile_contig7.13484.1 ID=mRNA_P-fluviatile_contig7.13484.1|Name=mRNA_P-fluviatile_contig7.13484.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=954bp|location=Sequence derived from alignment at P-fluviatile_contig7:614763..618577+ (Porterinema fluviatile SAG_2381)
CACCGGCAGCTGCAGGCCGCGGCACAGGCCGTGACAGCACCGGCAGCTGC
AGGCCGCGGCACAGGCCGTGACAGGTCATGGGATTCAGCCGCAGGCCCCC
CTGGCGGCGGGGGCGGCGGCGGCGGCGTCGGCCGCCACCGCAGCTGCGAC
AGCATCGTCTCCGGTGCCTACTCCGGCGGTGGCCGGCGGAGGGTTGGTGG
GCGCCGGTGCGCCGGCACCCGGGGTGGCGGTCGTTCCGACGGTGCCGGCA
CACATCGTAGCGGCTAACCTTTCTACGCAAGTCCGGTCATGGGATTCAGC
CGCAGGCCCCCCTGGCGGCGGGGGCGGCGGCGGCGGCGTCGGCCGCCACC
GCAGCTGCGACAGCATCGTCTCCGGTGCCTACTCCGGCGGTGGCCGGCGG
AGGGTTGGTGGGCGCCGGTGCGCCGGCACCCGGGGTGGCGGTCGTTCCGA
CGGTGCCGGCACACATCGTAGCGGCTAACCTTTCTACGCAAGTCCGGGCG
TTGCTTTCCCGGGCTCCGGGCGCCGCCGGGGTTGCCGGTACAGCCCAGTG
GGCGGAGGTTCTGCGACTGAACCCCCAGCTGGCGGCTCAGGTCCAGGCCG
TCCTCCGCACTGACACCACGGACACGTCAAAGGGCGTTGCTTTCCCGGGC
TCCGGGCGCCGCCGGGGTTGCCGGTACAGCCCAGTGGGCGGAGGTTCTGC
GACTGAACCCCCAGCTGGCGGCTCAGGTCCAGGCCGTCCTCCGCACTGAC
ACCACGGACACGTCAAAGGTGGAAGCGCTAGCTGGTTTATTCAGCGCGAT
CCGGCCGGATGCCGTGACAGCTTCAGCTGGAGTCGCCGGTGCACCGGGGG
CGGGGACTTGAGTGGAAGCGCTAGCTGGTTTATTCAGCGCGATCCGGCCG
GATGCCGTGACAGCTTCAGCTGGAGTCGCCGGTGCACCGGGGGCGGGGAC
TTGA
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