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Homology
BLAST of mRNA_P-fluviatile_contig7.13480.1 vs. uniprot
Match: D7FME6_ECTSI (Similar to mitochondrial import inner membrane translocase,TIM17/22/23-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME6_ECTSI) HSP 1 Score: 205 bits (522), Expect = 1.400e-61 Identity = 114/169 (67.46%), Postives = 127/169 (75.15%), Query Frame = 2
Query: 260 MGDWVADPAE-TPDAYSANCASRAAEGFYVGALYGTVWGFIGRAYSSPVFPSTPEMGGRSPEPTAEPKPARGASGGQPARNLLRALGRSAAGYGAATASTAGVFGVFVGIVNAGTCACERFRGKKDWINNMCGGAAAGLSVALLSRHTRSPRMVAAHVAGAAAITSVVA 763
M DW +P E T Y+ +C+SRAAEGFYVGALYG VWG IGRA +P PSTP MG P + +PA G +R + RA GR AAGYG A ASTAGVFGVFVG+VNAGTC CER RGKKDW NN GGAAAGLSVALLSRHTR+P+M+AAHVAGAAAITSVVA
Sbjct: 1 MEDWNVEPPEMTHKDYAPDCSSRAAEGFYVGALYGAVWGVIGRAAHAPTLPSTPAMGELKPPSGLQAQPAPGLETRGVSRQV-RAFGRGAAGYGIAAASTAGVFGVFVGMVNAGTCGCERLRGKKDWFNNAFGGAAAGLSVALLSRHTRTPQMLAAHVAGAAAITSVVA 168
BLAST of mRNA_P-fluviatile_contig7.13480.1 vs. uniprot
Match: A0A7S2MQ39_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MQ39_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.640e-9 Identity = 53/154 (34.42%), Postives = 72/154 (46.75%), Query Frame = 2
Query: 314 CASRAAEGFYVGALYGTVWGFIGRAYSSPVFPSTPEMGGRSPEPTAEPKPARGASGGQPARNLLRALGRSAAGYGAATASTAGVFGVFVGIVNAGTCACERFRGKKDWINNMCGGAAAGLSVALLSRHTRSPRMVAAHVAGAAAITSVVAIATG 775
C S+ A+G G L G VWG + F T +P + P ++ G R L ++GRS+ G FG+F+GI NA +C E+ RGKKDW+N+M GG AAG L S SPRM G +TS+ + G
Sbjct: 23 CGSKFADGAARGLLIGLVWGAV--------FDVTSLHEPATPHRSNPPCSSQTILWGSKVRPALYSMGRSSIG-----------FGLFLGIFNAISCNSEKIRGKKDWMNSMFGGFAAGTFAGLGSG---SPRMTFISALGTGTVTSLFYVVQG 154
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1197 |
| Cds size | 534 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817117.8111253-UTR-P-fluviatile_contig7:568301..568705 | 1622817117.8111253-UTR-P-fluviatile_contig7:568301..568705 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig7 568302..568705 - |
| 1693571200.3265355-UTR-P-fluviatile_contig7:568301..568705 | 1693571200.3265355-UTR-P-fluviatile_contig7:568301..568705 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig7 568302..568705 - |
| 1622817117.8706977-UTR-P-fluviatile_contig7:571825..572016 | 1622817117.8706977-UTR-P-fluviatile_contig7:571825..572016 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig7 571826..572016 - |
| 1693571200.3800633-UTR-P-fluviatile_contig7:571825..572016 | 1693571200.3800633-UTR-P-fluviatile_contig7:571825..572016 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig7 571826..572016 - |
| 1622817117.8823695-UTR-P-fluviatile_contig7:573756..573824 | 1622817117.8823695-UTR-P-fluviatile_contig7:573756..573824 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig7 573757..573824 - |
| 1693571200.3984733-UTR-P-fluviatile_contig7:573756..573824 | 1693571200.3984733-UTR-P-fluviatile_contig7:573756..573824 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig7 573757..573824 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817117.8248072-CDS-P-fluviatile_contig7:568705..568874 | 1622817117.8248072-CDS-P-fluviatile_contig7:568705..568874 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig7 568706..568874 - |
| 1693571200.337922-CDS-P-fluviatile_contig7:568705..568874 | 1693571200.337922-CDS-P-fluviatile_contig7:568705..568874 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig7 568706..568874 - |
| 1622817117.8394494-CDS-P-fluviatile_contig7:569330..569533 | 1622817117.8394494-CDS-P-fluviatile_contig7:569330..569533 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig7 569331..569533 - |
| 1693571200.3493047-CDS-P-fluviatile_contig7:569330..569533 | 1693571200.3493047-CDS-P-fluviatile_contig7:569330..569533 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig7 569331..569533 - |
| 1622817117.8497837-CDS-P-fluviatile_contig7:571218..571280 | 1622817117.8497837-CDS-P-fluviatile_contig7:571218..571280 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig7 571219..571280 - |
| 1693571200.3603709-CDS-P-fluviatile_contig7:571218..571280 | 1693571200.3603709-CDS-P-fluviatile_contig7:571218..571280 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig7 571219..571280 - |
| 1622817117.860375-CDS-P-fluviatile_contig7:571725..571825 | 1622817117.860375-CDS-P-fluviatile_contig7:571725..571825 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig7 571726..571825 - |
| 1693571200.3687072-CDS-P-fluviatile_contig7:571725..571825 | 1693571200.3687072-CDS-P-fluviatile_contig7:571725..571825 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig7 571726..571825 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig7.13480.1 >prot_P-fluviatile_contig7.13480.1 ID=prot_P-fluviatile_contig7.13480.1|Name=mRNA_P-fluviatile_contig7.13480.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=178bp
MGDWVADPAETPDAYSANCASRAAEGFYVGALYGTVWGFIGRAYSSPVFP STPEMGGRSPEPTAEPKPARGASGGQPARNLLRALGRSAAGYGAATASTA GVFGVFVGIVNAGTCACERFRGKKDWINNMCGGAAAGLSVALLSRHTRSP RMVAAHVAGAAAITSVVAIATGPPVGS* back to topmRNA from alignment at P-fluviatile_contig7:568302..573824- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig7.13480.1 ID=mRNA_P-fluviatile_contig7.13480.1|Name=mRNA_P-fluviatile_contig7.13480.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5523bp|location=Sequence derived from alignment at P-fluviatile_contig7:568302..573824- (Porterinema fluviatile SAG_2381) GCTTGCCCTCGCCCTCCTTGGTCTTGTACGTTGCGCATACCTCTAGCAGA
GATATCTCCTCACGACAGGTGCGTAAGTGTAGCCATTGCGTGCTAGAGTT
AGTGTCGTGGTGGTGTCAAATATTTTGCAAAAGAATCAGTCAACGGACGT
CAGATTATTCTTCATCGTCATGTGTTCCAACGAGCTATGCCATGCTCCCA
CCGCCGCCAGCCTTGACGCGTTTTCCGAGAGGCGATACCTCTCTGGCTCT
AACTAAGCTGTGTTTTTTGCGTTCTTGATTCCTGTGCGATGATCCCCGCA
GTGGATGACTGTCGTGTGAGTTTCTGGTTGTTGTTTGTTCGAGAAACCTG
GCCATGCCCTTAGCGGCACTTGTGGGTGTACAAGGTCTTTCTAGCTCTCT
AAGCGCCTTGCGGGTGCAGCTTTATCGTGGCAGACAGCAGTGCACAACGT
TCAGGAGTACCCTACGTGCAGTAGCGCACTACGTGCAGCATTAAGAAGGT
TTTTTTATCTTGTTGCGGGGATGCAATAATGCCGGCGTCCATGTCGGAGA
GGAGACGCCCGCCCGGACCCCTGGGAATCCCAACAACCGCCGGACACCCA
CCCCGAGGCCAGCGCACACTTTGTTGCTCTCGCGTCCCGTATATCAACGA
AAGTTGGCACGTCAAGGAGCGGTGGCAATAATATCTCTAGCCGTAGAAGT
ATACCAACAGCATGAGTCACCGTGTTGTCGGTACTGTGTCCACCATATGC
TTGCGCTTTGCTCGCTGTTTGCGGATTTCCTGGGCAGACAGCAGGTCGTT
GCCCTTTGGTCAATGAAGGGCGTCCCTCCCCCCCCATCATCTGAAATGGC
GCTCACTCACAACAACGCACACGATTACGTCAAATACGCGGACCAGCAGT
GTGCCGGTGGGCTGGCACACGCATGTTTCGTCCGACTCTGACCAAATAGG
AACATGCACGTACAGCTTGGTCTCCCCTCCCCGTGAAGATCTCGATTGCC
CCCGAAGGCTGAAAATGCGCAATGCACGGCACTAAGTTTGTAGGGCACAC
AGAGGCGCGCTCGCAAGAGAACGGCGCGTCCAGTTGCTATAGATTGCTGG
AGAAAGGGGGAAACTGCGGAGCTCAGCGTCGAGTGCAACACACAACTCTA
ACGATTGGCTTGGTTCGAGTCTGATGAGAAACCGAGGCAGCAATCTCAAG
GCCTAATTCTGCAGCTTATCGTGGTCTTGTGTGAGCGGGCCGGTGCTCTG
CACACGAGGAGATGGAGGACACCCTTTACTGTCAACAACAACCCGACAAA
TGGCGCGGGTGCAGTTTTGGATAGATTAGGAAAGCGACAGCCCCCCCGAA
AATGTTTGGCTTTCGTCGCCGCGAAAGCCGACCTCGCCACCCTGGTTTGG
ACAGTTCCATGGAACAATCGAGTTTGTTGCGACTTGGTCCGACGGGGAGG
GGGCGAGGACACACGGGATAGCCGAAAGCAACCGCATCCGAGCTGGTATA
GTATCTGGCTCTCAAAATGCATGGCGAAGTGAGACCTTAACAGCATGTGA
CTAAGCAAGCAGGAAAAAGGCGCCCAGAAATGACGAAATGACGACAGGCA
GCCGGAATGGTGTGTCGCTCTCGCATACATTCACGGAACCCCGTTTAGCC
GGCGGGCGTGGAGCACGTGTCCCCTGGTCGACAATTTTGGGGGTACGTGA
AAGGCCATTCACGCGTCAGCCTTCGAAACGGACCGAAAATCAGGAGACGT
TTGTGCTCAAAACAAGCCCGTTGTTGTTCATGCCCTTCGTTTTGCTGTCA
ACAAGCAGACATCCCACACGGAGTTTTGCTTGTCTCGTATGGACCAGGAG
GCAAGCCCAACACAGAAGAGCGGCAGCAGCACCACTACGACGACCACCAG
CTGCGGTAACGGCGAGAGCAAGTAAGCCGCACGAAGGAGAACAACAGCAG
CAGCAGCAGTAGCGGCGGTGGCGGCGGCGGCGGCGGCAACTGTGACAGCA
TGGGTGACTGGGTAGCTGACCCAGCAGAGACTCCCGACGCGTACAGCGCA
AACTGCGCGTCGAGAGCGGCGGAAGGTTTCTACGTAGGGGCTCTCTATGG
TACGCAGTATTTACCCCCGTCTAATTCCTTTGCTTAATGCCCTCTTGCCG
ATTGGTCCTGTGATTACCGAGGGTATATACCTGCTTTGGTCGGTGCGCGT
GCTCTATCACACCGTGTATAAAAAGGAAAGCCCATCTCTAGCACCGTGAA
CGTATGATTTTCCCCCTTGTGCTGAATGTTTTGCTGCTTACGTCAGGGGA
ATGAAAGCACGCGCGTCTCAAGTGGACTGGTTTCGGGGGTTTCTCTGTTT
GCTCCCTGCGGTCTTGGCGTCGTCATCGGAGAGCGCCCCGTTACGCCGCT
CAGAAACGCGCTGCTGTGCAACGCCCCCGTCGGCCTAATTTAACCTCCGA
AAGTCAACCACGCAAAAATGGTTGCGCTCCGCTCCGTTTCCTCTCTGGCC
TTCGCCGAAACGCAACAAAATTAAACGCCGCCGCCCTCGCTTAGGAACGG
TCTGGGGGTTCATCGGCCGCGCCTATTCTTCCCCGGTTTTTCCGTCGACG
CCAGAGGTAAGCCATTGTTGTAGTTCGTGCTTCAGAATGACTGCCATACA
CGGATTAGAGTTTTCGATGACTTCTTCACCAAGGTATGCGCACGGGTGGA
ACCCGCCGACGAATAGGGGATACATCGAGTCACTCATTGGTGCTTGACGC
GCACAAGGGACGAACGGACCAAATGGTTGCAATTCAAGAGGTGCTTTCTT
CACACGCGGGAGGGGGGGGAGTTCTTGGAACGGTTTCAACCCCCCCCTCC
CTGTGCCTCAGAGGTCTACAGCTGAACGGCATGCGTGGCGTGAGTACCCC
CCGCCCCCTTCTCCCGCTATCCCTCAGCGCGAGCAGGGAGCATGACTGAC
GAGGAACAGAACCACTCGCGTTGGTGCCGGCCAAGTTTAGTTCACGACTT
TGAAGGCGTTCGTTGAACGGGGCTTGGGTGTGTATGCGTTGTTCTTCTTG
CTTTCTTGTTTCACTTGCGGTTGCCATGGATACCGATAATTCCGTCAAAT
TCGGGTTACGTGAAGAATCTTCGCTGGCTACGCGCGCACTGTACGAAAGG
TAACCGGCAAAATTACACACGTCGGACGGATCACGATCTAGACCATCTGT
TGGCTACATACATCACGGCCAGCCAACATGTACAGATCATCGACGGGCTT
TACAGATCGCCTGTGACCAATGGTAATTCGATCCTCGACAGCATCGATCG
GTGGCCTGATCTGCCCGACGTGTGTGACACGTCGCACCAATCGTTGAGAA
GAAATATCCCTGTTGCTTTGCGAAGAGCCAAACGATGATGCCTATCTTCT
CCAGGACGAGCCGTCCACGGCTCTTAATGGAAAAGCTTTTCCTGAAGACA
TGCCGACGGCCGGGAGTTTTTTGTTTTTGTTATTTCCAATGACATCCCTT
CAAATCGTAAGAATTTCGTCCCGAAATTATCCGACGTTTTATGGAGCACG
TCTCCCCGCGGATCAATGAGGAACACGCGAGCTCATTTCCGTTCAAATCC
GAAAAAGCTTTGGTTTTGTTTTACCGAGGGGCCTTTCGATCTTAAGCTGC
ACGACTGGTTCGGATGAAAACACCCTGGTTCGTGTACACCAGGACGATTG
CACGCCGCCGCTCTCACCGCTGTGGGTGCCTGGTGCCGTTGCCCTTCGTA
AGTGCCGAAGAACTGCTCGGGCGTATACTACGCTTACGCTTTGATTTGAT
TTTTGCCTCCATGTTTCAGGAGTTGGGATACATCCAATATGGAGAAAAGG
CACTGACTCTTGGGCCTTTTATTTTATGTTATGATGAAGCGAAAATATTG
ATGCGATGTTTGTGTCTGCGATGTCTGTTCTTTGGTTTCAAAAGTGGAGA
CTCCCGCCCGCGCCCCAACTCATGCTCCCCACTCCCACACACCCCCTTTC
CCGTGCTCGACCAAACGCTTCTCCACCGTTCCCCATCTTTCCTCTTCACG
ACCACGGGTTCACGCTCGACGAGATGCCCTTAATATCCGTCCTGTCCCCT
CGCCCCCCTCCCGAGAACGTTGCTCTTCTCCGTGCCCGAGGAGACGCCCT
CCATCCACCGTCACCCCTTCCTTTGCGCTGCTTTTCTCGGCTAGACTCAC
GCCTGCACGTACTCCTCACCGGCTCCATCCAATCCAGCCCCACCACTTGT
CCACGCTCTCCTTCCCGCTGCTGCCGCCGCTTTCGAGATAGATGGGGGGA
AGGTCTCCGGAGCCGACGGCGGAACCCAAACCCGCACGAGGGGCGTCCGG
GGGCCAGCCGGCGCGAAATCTCCTCCGGGCCCTCGGGAGGAGTGCCGCCG
GGTACGGCGCGGCGACCGCGTCGACGGCGGGGGTGTTCGGGGTGTTCGTG
GGCATCGTGAACGCCGGGACGTGCGCGTGCGAGCGATTCCGAGGGTAGGT
TTGGTTGTGGTCGAAACGAGACGTTCTTTTTTCTTTGCAATGTGGACGCC
TACATGTTTGCCTCGTTTTCCTTGTTTTTTGTTTGTTCGAGGGGTCTTCG
AGCTGTCTAATTTCGGTGGAATGTACGCGGACTGCACATCTTGTTGTCGG
TGTTCCGGACGAAGACCTCTAGGATCACTGCGCGAAAATGAATGATGCAT
GGGGCCACACGGCGCCCGACACGGGTTGACTTGGGAGAACGATTTAATTA
GATGGATTGACTCAAGATAGCACCCCCCTCGAAAGATTTTCAAAGCTCCA
TTCCTCGAAATCATGAAGATCGCGGAGACCTTCCACTTGATTCTCTCAAC
CACAAACTTGGGGCATGTTCTTTATTGTGGCTGTTCCTCGACTCTGTTCC
GCGTTTGCGCTATTGCTGTTGAACATGTGCTTGCTGGCTGGCTGCTAAAG
GAAGAAGGACTGGATCAATAACATGTGCGGGGGCGCGGCGGCAGGGCTGA
GCGTGGCGCTGCTGTCGAGACATACACGTAGCCCCCGGATGGTCGCGGCT
CACGTCGCGGGGGCAGCCGCGATAACGTCGGTGGTTGCAATCGCGACCGG
TCCGCCGGTCGGAAGTTGAAGCAAAAGACACACTCCGGAGTGTACGTTTC
TTCCATGTGCAGGAACCCGGTTTATGAGCGCTGTTTTCTTTCCAAAGTTA
AATTCCACTCTGGCCTTTTCTCCTGGGGGCTTTCGTTTCTCTTTGCTGCA
GTCAAGAACAATGGGAGTGCCTGACGACTGGACAATCGCGACCGGTCAGC
CTGTCGGCAGTGGAAGCAAAAACCCAACAATCAGGAACCCCGTTTTTCGA
CGGGTTCTTTGAGACCATCGCCAACAGAAAATATGGAGTTCGGATCTGAG
GCAGCACTGTGGACACTCCCTGCCACCCACGCCCGCTCGAGAAACAAACT
CTCGTCGTGGTTGCACACAACGAAAATGAGCCAGCATAGGAGGCGACCCT
GTGGATACAACGCAATCTATTAG back to topCoding sequence (CDS) from alignment at P-fluviatile_contig7:568302..573824- >mRNA_P-fluviatile_contig7.13480.1 ID=mRNA_P-fluviatile_contig7.13480.1|Name=mRNA_P-fluviatile_contig7.13480.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1068bp|location=Sequence derived from alignment at P-fluviatile_contig7:568302..573824- (Porterinema fluviatile SAG_2381) ATGGGTGACTGGGTAGCTGACCCAGCAGAGACTCCCGACGCGTACAGCGC AAACTGCGCGTCGAGAGCGGCGGAAGGTTTCTACGTAGGGGCTCTCTATG ATGGGTGACTGGGTAGCTGACCCAGCAGAGACTCCCGACGCGTACAGCGC AAACTGCGCGTCGAGAGCGGCGGAAGGTTTCTACGTAGGGGCTCTCTATG GAACGGTCTGGGGGTTCATCGGCCGCGCCTATTCTTCCCCGGTTTTTCCG TCGACGCCAGAGGAACGGTCTGGGGGTTCATCGGCCGCGCCTATTCTTCC CCGGTTTTTCCGTCGACGCCAGAGATGGGGGGAAGGTCTCCGGAGCCGAC GGCGGAACCCAAACCCGCACGAGGGGCGTCCGGGGGCCAGCCGGCGCGAA ATCTCCTCCGGGCCCTCGGGAGGAGTGCCGCCGGGTACGGCGCGGCGACC GCGTCGACGGCGGGGGTGTTCGGGGTGTTCGTGGGCATCGTGAACGCCGG GACGTGCGCGTGCGAGCGATTCCGAGGATGGGGGGAAGGTCTCCGGAGCC GACGGCGGAACCCAAACCCGCACGAGGGGCGTCCGGGGGCCAGCCGGCGC GAAATCTCCTCCGGGCCCTCGGGAGGAGTGCCGCCGGGTACGGCGCGGCG ACCGCGTCGACGGCGGGGGTGTTCGGGGTGTTCGTGGGCATCGTGAACGC CGGGACGTGCGCGTGCGAGCGATTCCGAGGGAAGAAGGACTGGATCAATA ACATGTGCGGGGGCGCGGCGGCAGGGCTGAGCGTGGCGCTGCTGTCGAGA CATACACGTAGCCCCCGGATGGTCGCGGCTCACGTCGCGGGGGCAGCCGC GATAACGTCGGTGGTTGCAATCGCGACCGGTCCGCCGGTCGGAAGTTGAG AAGAAGGACTGGATCAATAACATGTGCGGGGGCGCGGCGGCAGGGCTGAG CGTGGCGCTGCTGTCGAGACATACACGTAGCCCCCGGATGGTCGCGGCTC ACGTCGCGGGGGCAGCCGCGATAACGTCGGTGGTTGCAATCGCGACCGGT CCGCCGGTCGGAAGTTGA back to top
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