mRNA_P-fluviatile_contig7.13450.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13450.1
Unique NamemRNA_P-fluviatile_contig7.13450.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:56016..56587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size574
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817110.6632786-UTR-P-fluviatile_contig7:56015..562661622817110.6632786-UTR-P-fluviatile_contig7:56015..56266Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 56016..56266 +
1693571160.7049315-UTR-P-fluviatile_contig7:56015..562661693571160.7049315-UTR-P-fluviatile_contig7:56015..56266Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 56016..56266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817110.674287-CDS-P-fluviatile_contig7:56266..565871622817110.674287-CDS-P-fluviatile_contig7:56266..56587Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 56267..56587 +
1693571160.7227569-CDS-P-fluviatile_contig7:56266..565871693571160.7227569-CDS-P-fluviatile_contig7:56266..56587Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 56267..56587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13450.1prot_P-fluviatile_contig7.13450.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 56267..56587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13450.1

>prot_P-fluviatile_contig7.13450.1 ID=prot_P-fluviatile_contig7.13450.1|Name=mRNA_P-fluviatile_contig7.13450.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=107bp
MRRNHHARKATSQGVRHTRQSPATQTTNTPHPHEGEGGHWTKTAVSSLSH
SLYGTSFLLIWSDVALSCSRVVSYVVAPKAVWPKFLFTHICASISHSKIH
LRARAVT
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mRNA from alignment at P-fluviatile_contig7:56016..56587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13450.1 ID=mRNA_P-fluviatile_contig7.13450.1|Name=mRNA_P-fluviatile_contig7.13450.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=572bp|location=Sequence derived from alignment at P-fluviatile_contig7:56016..56587+ (Porterinema fluviatile SAG_2381)
CCATGAAAGACACGGGACTGCGTTGAAATACAAAACGCGCCCGCAAGCAA
GAAACGTGAGACATGGGTTGCTTGAATTTCATATTTTTCGATTGAACAGC
CAGCCTATGTTGCTGGTTCTCGTATTCGCAGTTTCATATTTTTGGGGCCT
TGAAGAACATTTGATGCTTGTGTTCTTGTACTGCAACGTTTCTCCCGTCC
ACGTTGTGTTTCTCTCGATCGAGGTGGTGAGAAGCGCCATCACGCCCGGT
CATGCGTAGGAACCACCACGCGCGCAAGGCCACTTCGCAGGGGGTAAGGC
ACACAAGACAGTCTCCCGCAACCCAAACAACAAATACTCCACACCCACAT
GAGGGTGAGGGTGGGCACTGGACGAAAACGGCCGTTTCGTCACTTTCACA
CTCTCTCTACGGCACCTCGTTTCTTCTAATTTGGAGCGATGTCGCCCTTA
GTTGTTCACGGGTTGTTTCTTACGTGGTGGCTCCGAAAGCTGTGTGGCCG
AAATTTCTTTTCACGCACATATGCGCCTCAATTTCTCACTCGAAAATTCA
CTTGCGGGCGCGTGCTGTAACA
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:56016..56587+

>mRNA_P-fluviatile_contig7.13450.1 ID=mRNA_P-fluviatile_contig7.13450.1|Name=mRNA_P-fluviatile_contig7.13450.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=642bp|location=Sequence derived from alignment at P-fluviatile_contig7:56016..56587+ (Porterinema fluviatile SAG_2381)
ATGCGTAGGAACCACCACGCGCGCAAGGCCACTTCGCAGGGGGTAAGGCA
CACAAGACAGTCTCCCGCAACCCAAACAACAAATACTCCACACCCACATG
AGGGTGAGGGTGGGCACTGGACGAAAACGGCCGTTTCGTCACTTTCACAC
TCTCTCTACGGCACCTCGTTTCTTCTAATTTGGAGCGATGTCGCCCTTAG
TTGTTCACGGGTTGTTTCTTACGTGGTGGCTCCGAAAGCTGTGTGGCCGA
AATTTCTTTTCACGCACATATGCGCCTCAATTTCTCACTCGAAAATTCAC
TTGCGGGCGCGTGCTGTAACAATGCGTAGGAACCACCACGCGCGCAAGGC
CACTTCGCAGGGGGTAAGGCACACAAGACAGTCTCCCGCAACCCAAACAA
CAAATACTCCACACCCACATGAGGGTGAGGGTGGGCACTGGACGAAAACG
GCCGTTTCGTCACTTTCACACTCTCTCTACGGCACCTCGTTTCTTCTAAT
TTGGAGCGATGTCGCCCTTAGTTGTTCACGGGTTGTTTCTTACGTGGTGG
CTCCGAAAGCTGTGTGGCCGAAATTTCTTTTCACGCACATATGCGCCTCA
ATTTCTCACTCGAAAATTCACTTGCGGGCGCGTGCTGTAACA
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