mRNA_P-fluviatile_contig7.13448.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13448.1
Unique NamemRNA_P-fluviatile_contig7.13448.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:46082..46288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size176
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817107.0251257-CDS-P-fluviatile_contig7:46082..461701622817107.0251257-CDS-P-fluviatile_contig7:46082..46170Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 46083..46170 -
1693571132.5966578-CDS-P-fluviatile_contig7:46082..461701693571132.5966578-CDS-P-fluviatile_contig7:46082..46170Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 46083..46170 -
1622817107.0367408-CDS-P-fluviatile_contig7:46202..462881622817107.0367408-CDS-P-fluviatile_contig7:46202..46288Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 46203..46288 -
1693571132.7525072-CDS-P-fluviatile_contig7:46202..462881693571132.7525072-CDS-P-fluviatile_contig7:46202..46288Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 46203..46288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13448.1prot_P-fluviatile_contig7.13448.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 46083..46288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13448.1

>prot_P-fluviatile_contig7.13448.1 ID=prot_P-fluviatile_contig7.13448.1|Name=mRNA_P-fluviatile_contig7.13448.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=58bp
RQLQNRALQGGRRLVPDRQVVPVGLKLLNPSVLKSSGRSNPLPLYRATNS
AFTSCLTS
back to top

mRNA from alignment at P-fluviatile_contig7:46082..46288-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13448.1 ID=mRNA_P-fluviatile_contig7.13448.1|Name=mRNA_P-fluviatile_contig7.13448.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=207bp|location=Sequence derived from alignment at P-fluviatile_contig7:46082..46288- (Porterinema fluviatile SAG_2381)
AGGCAGCTGCAGAACCGGGCACTCCAGGGAGGGCGTCGTCTGGTTCCTGA
CCGACAGGTGGTGCCCGTCGGCCTCAAGCTCCTGAAGTATCTCGTTCATC
AGGGCCTCATCTTCGCAGCCCTTCCGTGCTCAAGAGCTCCGGGAGGTCGA
ATCCACTGCCTTTATATCGCGCAACAAATAGCGCCTTCACGTCTTGCTTG
ACTTCAC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig7:46082..46288-

>mRNA_P-fluviatile_contig7.13448.1 ID=mRNA_P-fluviatile_contig7.13448.1|Name=mRNA_P-fluviatile_contig7.13448.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=348bp|location=Sequence derived from alignment at P-fluviatile_contig7:46082..46288- (Porterinema fluviatile SAG_2381)
AGGCAGCTGCAGAACCGGGCACTCCAGGGAGGGCGTCGTCTGGTTCCTGA
CCGACAGGTGGTGCCCGTCGGCCTCAAGCTCCTGAAAGGCAGCTGCAGAA
CCGGGCACTCCAGGGAGGGCGTCGTCTGGTTCCTGACCGACAGGTGGTGC
CCGTCGGCCTCAAGCTCCTGAACCCTTCCGTGCTCAAGAGCTCCGGGAGG
TCGAATCCACTGCCTTTATATCGCGCAACAAATAGCGCCTTCACGTCTTG
CTTGACTTCACCCTTCCGTGCTCAAGAGCTCCGGGAGGTCGAATCCACTG
CCTTTATATCGCGCAACAAATAGCGCCTTCACGTCTTGCTTGACTTCA
back to top