mRNA_P-fluviatile_contig7.13438.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13438.1
Unique NamemRNA_P-fluviatile_contig7.13438.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:9585..10052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size468
Cds size324
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817110.5781999-CDS-P-fluviatile_contig7:9584..99081622817110.5781999-CDS-P-fluviatile_contig7:9584..9908Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 9585..9908 +
1693571160.6427338-CDS-P-fluviatile_contig7:9584..99081693571160.6427338-CDS-P-fluviatile_contig7:9584..9908Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 9585..9908 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817110.589507-UTR-P-fluviatile_contig7:9908..100521622817110.589507-UTR-P-fluviatile_contig7:9908..10052Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 9909..10052 +
1693571160.6638477-UTR-P-fluviatile_contig7:9908..100521693571160.6638477-UTR-P-fluviatile_contig7:9908..10052Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 9909..10052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13438.1prot_P-fluviatile_contig7.13438.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 9585..9908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13438.1

>prot_P-fluviatile_contig7.13438.1 ID=prot_P-fluviatile_contig7.13438.1|Name=mRNA_P-fluviatile_contig7.13438.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=108bp
MIELGHHAPAPARLRVRIDLLRPPSAPPTNLHYTSQLSAGGLIALLPYAV
AELAKRTRMCRKAPPIQRLQRDPGCEICTSSHYEQHVIHAVVCFVWNRAC
GHVGLSN*
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mRNA from alignment at P-fluviatile_contig7:9585..10052+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13438.1 ID=mRNA_P-fluviatile_contig7.13438.1|Name=mRNA_P-fluviatile_contig7.13438.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=468bp|location=Sequence derived from alignment at P-fluviatile_contig7:9585..10052+ (Porterinema fluviatile SAG_2381)
ATGATTGAGCTTGGACACCATGCGCCTGCACCGGCGCGCCTGCGTGTGCG
CATCGATTTGTTGCGTCCTCCCTCTGCGCCGCCGACAAACCTTCATTACA
CCAGCCAACTCAGTGCAGGGGGACTAATCGCGCTGCTGCCGTATGCTGTT
GCTGAACTGGCCAAGCGCACCAGAATGTGTCGCAAGGCTCCTCCGATTCA
ACGCTTACAGAGGGATCCGGGGTGTGAGATCTGCACCAGCAGTCACTATG
AGCAGCATGTCATACATGCCGTGGTTTGTTTCGTCTGGAATAGAGCATGC
GGGCATGTAGGGCTGTCTAACTAGCTCAGCGAGAGCCCACCGGGGGCCGG
GGCTTTCGAGAGCGAGTTTATATTCTTCATTTTGACAAACTGCGGATCCC
CGGCATGCATGGGAATCGAGGTTTCTGACACCTACACCGCGACTGGAGCA
ACGAATTGGCTTCGTTGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:9585..10052+

>mRNA_P-fluviatile_contig7.13438.1 ID=mRNA_P-fluviatile_contig7.13438.1|Name=mRNA_P-fluviatile_contig7.13438.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=648bp|location=Sequence derived from alignment at P-fluviatile_contig7:9585..10052+ (Porterinema fluviatile SAG_2381)
ATGATTGAGCTTGGACACCATGCGCCTGCACCGGCGCGCCTGCGTGTGCG
CATCGATTTGTTGCGTCCTCCCTCTGCGCCGCCGACAAACCTTCATTACA
CCAGCCAACTCAGTGCAGGGGGACTAATCGCGCTGCTGCCGTATGCTGTT
GCTGAACTGGCCAAGCGCACCAGAATGTGTCGCAAGGCTCCTCCGATTCA
ACGCTTACAGAGGGATCCGGGGTGTGAGATCTGCACCAGCAGTCACTATG
AGCAGCATGTCATACATGCCGTGGTTTGTTTCGTCTGGAATAGAGCATGC
GGGCATGTAGGGCTGTCTAACTAGATGATTGAGCTTGGACACCATGCGCC
TGCACCGGCGCGCCTGCGTGTGCGCATCGATTTGTTGCGTCCTCCCTCTG
CGCCGCCGACAAACCTTCATTACACCAGCCAACTCAGTGCAGGGGGACTA
ATCGCGCTGCTGCCGTATGCTGTTGCTGAACTGGCCAAGCGCACCAGAAT
GTGTCGCAAGGCTCCTCCGATTCAACGCTTACAGAGGGATCCGGGGTGTG
AGATCTGCACCAGCAGTCACTATGAGCAGCATGTCATACATGCCGTGGTT
TGTTTCGTCTGGAATAGAGCATGCGGGCATGTAGGGCTGTCTAACTAG
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