mRNA_P-fluviatile_contig69.13432.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig69.13432.1
Unique NamemRNA_P-fluviatile_contig69.13432.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig69.13432.1 vs. uniprot
Match: A0A6H5JT46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT46_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 9.600e-18
Identity = 100/235 (42.55%), Postives = 114/235 (48.51%), Query Frame = 1 
Query:  436 MQAQVMMVPA--GGSWMAYVDNHGRPCWRNTATNEWTY--SN---------PGFAPGLPPQQQQMIFGYPGGVYGWPTAMAPAATVPPP-------GSYFYG--PGGTPHQQQVMYMQPMMQHPQ---------HPQQQVXXXXXXXXXXXXXXXXXXXXESAAAVGAATAAPQEVPHGDM-MPDPNGPDAAAWFSGPGP--AYMPYPSSHEDKGEFPVSFEAADMMPEWLGDAA 1038
            MQA  MM  A  GGSWMAY D  GRPCW NTATNEWTY  SN                 P         P G+Y WPTA APAA + P        G YFYG  PG        + M P +  P          H QQQ+     XXXXXXXXXXXXXX     A   A    QE P     + DPNGP+A     GPGP   +MPY  SH+ +G  PV F+   M+P W+G +A
Sbjct:    1 MQAHPMMTAAVQGGSWMAYRDREGRPCWHNTATNEWTYDLSNGXXXXXXXXXXXXXXXXPAVATAAATVPAGMYAWPTAPAPAAVMVPTAVPQQLAGPYFYGADPG-------TVVMAPAIMMPAAGPYDAVAAHQQQQMLYMQQXXXXXXXXXXXXXXPGLMMA--PAYQEQQEFPQPQYGVIDPNGPEAGVLL-GPGPPDGFMPYAKSHKARGSVPVPFDPTTMLPGWMGGSA 225
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig69.13432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JT46_9PHAE9.600e-1842.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig69contigP-fluviatile_contig69:640382..645723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_005230.1
Exons3
Model size4152
Cds size783
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig69.13432.1prot_P-fluviatile_contig69.13432.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig69 643316..645288 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817106.235858-UTR-P-fluviatile_contig69:640381..6433151622817106.235858-UTR-P-fluviatile_contig69:640381..643315Porterinema fluviatile SAG_2381UTRP-fluviatile_contig69 640382..643315 -
1693571125.6795373-UTR-P-fluviatile_contig69:640381..6433151693571125.6795373-UTR-P-fluviatile_contig69:640381..643315Porterinema fluviatile SAG_2381UTRP-fluviatile_contig69 640382..643315 -
1622817106.2811065-UTR-P-fluviatile_contig69:645288..6457231622817106.2811065-UTR-P-fluviatile_contig69:645288..645723Porterinema fluviatile SAG_2381UTRP-fluviatile_contig69 645289..645723 -
1693571125.7242827-UTR-P-fluviatile_contig69:645288..6457231693571125.7242827-UTR-P-fluviatile_contig69:645288..645723Porterinema fluviatile SAG_2381UTRP-fluviatile_contig69 645289..645723 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817106.2485597-CDS-P-fluviatile_contig69:643315..6434051622817106.2485597-CDS-P-fluviatile_contig69:643315..643405Porterinema fluviatile SAG_2381CDSP-fluviatile_contig69 643316..643405 -
1693571125.689774-CDS-P-fluviatile_contig69:643315..6434051693571125.689774-CDS-P-fluviatile_contig69:643315..643405Porterinema fluviatile SAG_2381CDSP-fluviatile_contig69 643316..643405 -
1622817106.2599072-CDS-P-fluviatile_contig69:643494..6441101622817106.2599072-CDS-P-fluviatile_contig69:643494..644110Porterinema fluviatile SAG_2381CDSP-fluviatile_contig69 643495..644110 -
1693571125.7004013-CDS-P-fluviatile_contig69:643494..6441101693571125.7004013-CDS-P-fluviatile_contig69:643494..644110Porterinema fluviatile SAG_2381CDSP-fluviatile_contig69 643495..644110 -
1622817106.2713804-CDS-P-fluviatile_contig69:645211..6452881622817106.2713804-CDS-P-fluviatile_contig69:645211..645288Porterinema fluviatile SAG_2381CDSP-fluviatile_contig69 645212..645288 -
1693571125.7118077-CDS-P-fluviatile_contig69:645211..6452881693571125.7118077-CDS-P-fluviatile_contig69:645211..645288Porterinema fluviatile SAG_2381CDSP-fluviatile_contig69 645212..645288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig69.13432.1

>prot_P-fluviatile_contig69.13432.1 ID=prot_P-fluviatile_contig69.13432.1|Name=mRNA_P-fluviatile_contig69.13432.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=261bp
MQAQVMMVPAGGSWMAYVDNHGRPCWRNTATNEWTYSNPGFAPGLPPQQQ
QMIFGYPGGVYGWPTAMAPAATVPPPGSYFYGPGGTPHQQQVMYMQPMMQ
HPQHPQQQVMMMMPEYPQQPQQYQMMMFPESAAAVGAATAAPQEVPHGDM
MPDPNGPDAAAWFSGPGPAYMPYPSSHEDKGEFPVSFEAADMMPEWLGDA
AEVAFAGVAAGKAAGSANGLAGIYGKAKKMGRRQRQRLEVEELGRGGGGQ
RPDRTADGDR*
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mRNA from alignment at P-fluviatile_contig69:640382..645723-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig69.13432.1 ID=mRNA_P-fluviatile_contig69.13432.1|Name=mRNA_P-fluviatile_contig69.13432.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5342bp|location=Sequence derived from alignment at P-fluviatile_contig69:640382..645723- (Porterinema fluviatile SAG_2381)
CAGCGTTTCTCATTCGCTTTGGAGAAATTGAGCCTCGTCGTCTTGCAGCC
GCGTTTCTTACCAGCGGGTCGGTGCTGTACAAAAGAGGGCGAGAGCTGCT
GTCTCTGAAGAGAGAGAGGGCGCGTGCGCAAGGAGCCGCTCGTCGTTTCC
CAGCAGCGAACACGAAAGGCATGGAGAGGGAGAAACAGCGAGAGAGAGCT
TTATCGGTTCAGAGCAAGCGAACTATTACTTACAGCAGCAACGGCAGCGA
CTCGGTATCATACGGAGAGAAGCAAGGGATATTTGTTTTAAACCCCTTCT
GAATGGAAAAACTGTTTCCAACCTTTCCATTCTCTTCGTGAATACAACAA
ACAAAAATGTCGTGCCTCGGTGGCCGCCGCGTAACCACCCCACCATCCAT
CAAAGAAAGGGAAGGGAGGCGAAGAAGGACACGGGATGCAGGCGCAAGTG
ATGATGGTCCCCGCCGGGGGGTCATGGATGGCGTACGTGGACAACCACGG
TCGGCCTTGCTGGTGAGACACTAGATTACGAGGGAGGTATATATATATGA
AGTAACTCATTGAAGGAGGTGTTTGTGTTTGAGTTTGTTGTTGCTTTTGT
GGTTGTCGTGCTTTTGGCTTGTAGTTGCAGGAACGGAAGCCACCGTCTGT
TACGACGGGTTCGAGATGGGCTCATGTACGGACTCTTGAAAACTGTGGTT
GTCGTGCTTTCGACTTGTAGTTGCAGGAACGGAAGCCACCGTCTGTTATG
ACGGGTTAGAGATGGGCTCATGTGCGGACTCTTGAAAACATTACTATGGG
AGTCATCACGATTAGAAAAGTGTACCCGTTGAATGACAAAAATGAGTAAA
GGGTGTATTTTCTTGTCTAATTTTATACTTCGAAGGACAAGTACATTTCT
CGCAAGACAAATATGCGGACTAAATCGAAGTCTGGCTTTAGACTCCCCGC
CGCCGAGACTTCAAGACTTCACGTACAACAGACGTCACTCAGTTGAGGAC
AAGATTGCAAGAATGTGTGCTGCTGCTGAAGATAACAGATCCGAGAGTTG
AGATATAAAGGCAGCAGTTTCAGGCCCAGGGAACCTTAAATTTTAAGACG
AGTTCCCAGTTTTTCAGTATTCAAGTGAGAGAATCCATCGAAGTGACGGC
CGAAAGCCGGAGACGGCTCATGACAGAGGAAAAGGCATCGGGAGGGAGTC
TCATGATTCTGTCGGCCTGGGGAGCCCGAGCGAGGGCCTGAGAATCACGG
AAGCAGAAGGTCAAACAGGCGGGGAGAGAGAAAGAAGTTGTGGAGTGAGA
AAGTCGGAGAATTCGACTGTCGCCGCCAACTGTACGCACTCGCATCGCGC
AGAGGCACGCGTGTCGCTGTGTAGTATTTTCATTTGGCCATTTAGGAGTG
GACGCTCGTCCCCAGAGATTTGATCGTCACTACACCGGGCAGCGGCACTA
TTCAGCCGGCACTGATGAGGGCACTCCCACTGAACTATCCCTCTCCGCCA
TATGGGGCTACGTTTTTTGGTCCGACCAGCTTTAATGTTGAAATCCTCGC
GGGTGCCTAATACTACTCGCGCATTCGCTTGCCCGAATCGACAAAATTGT
GCATGTTTCATAGGCGCAACACCGCAACAAATGAGTGGACCTACAGCAAC
CCCGGCTTCGCGCCGGGATTGCCACCTCAGCAACAACAGATGATTTTCGG
CTACCCTGGAGGGGTGTACGGCTGGCCAACGGCGATGGCGCCGGCGGCCA
CGGTGCCCCCTCCAGGTTCGTACTTCTACGGCCCCGGCGGCACACCCCAT
CAACAGCAGGTAATGTACATGCAGCCGATGATGCAGCATCCGCAGCATCC
GCAGCAGCAGGTGATGATGATGATGCCGGAGTACCCTCAGCAGCCGCAGC
AGTACCAGATGATGATGTTTCCGGAATCGGCGGCGGCAGTCGGAGCCGCC
ACCGCTGCTCCCCAAGAAGTCCCTCACGGCGACATGATGCCCGACCCCAA
CGGCCCGGACGCGGCGGCGTGGTTCAGCGGCCCCGGGCCCGCCTACATGC
CGTACCCCAGCAGTCACGAGGACAAGGGGGAGTTCCCTGTGTCATTCGAA
GCGGCCGACATGATGCCGGAATGGCTCGGCGACGCGGCCGAGGTGGCGTT
CGCCGGGGTGGCCGCCGGGAAGGCCGCCGGCAGCGCGAACGGTCTCGCTG
GGATCTACGGTAAGGCGAAGAAGATGGGTGTCGAGAAGGAGAAGGAGAAG
GAGAAGGAAGAACCGCAGCGAAAGAACAAGAAGGAGGAGGAAGAGGAGGA
CGAGCCAGGCGATGAGAGCGACGACAACGACAACGGCTCGAAGTCGAAGA
GCTTGGGAGAGGAGGAGGAGGACAAAGACCCGACCGCACCGCCGACGGTG
ACCGATGACGACGCCAGCGGCGGCGGCGGCGGCGACGGTGCCCGCAGCAG
CCGCAGCAGCAGCCGAAGCACCGTCGTTGCGGCCGCCGCCTCCGATTTCG
ACGACGACGACGATGACGGAAGCGGCGCAGACGTCGAGAAAGAGGTGGTG
ACCGCCTCGGCTGCTGCCGCCGCCGCCGCCGCCGGAATCGCCGCCGCCGT
CGCCGCCGCTCGCTCGTCTCCCGAGGCCAATGGGGCCAATTCCATTCCCA
AACCACCGGGCGACGCGGCCGGTGGGGGAGGAGAAGGAGAGGGAGCGACG
CAAGCGGTAGCACGGGGGGCGGGCGGGGGCGCTTGGGTACCCTACATCGA
CGCGGACGGGTGCAAACGGTGGCGCAGCACGGTCACCGGGAAACGGCTCG
ACGAGAACCCGTAAGCGTGACGTGTCTGATTCATTTTCCGGTTCACTTTC
CTGTGGTAAGTTAATTGGTTTCGGTGTTGCATCCCGGTCGTTTGGGTACT
CGATCATTGCGTAGGCTCTCAAACACTGTCACCAGGAAACTGCTCGACGG
GGCAGGGCTCTGCGCATGACGCGTCCGGGTCTGTTCCGTTTGGTTTCGCT
TCGGTTTGGTTCGGTTTGGTTCGGATTGGTTGCTTTTGTGGTTTCGGGAT
AGTGATTGTTCGTTTTCGGTTACGTTTTCGTTTCGCCAGTGCTGTCTTCG
TGTCATCGCTCTTGGCTCCTTTCTCTCGCGAGTTGCACCCGGTAATTCTC
AATCTCTCACGACCCTCATGATTGACTCAGAATCAGTGGAAAGGGAATGA
ATGAGCAACGGCGCGTGTGATGGCACATTTTCCCGCTCCTCTACGCTTAC
CCCTCGGTTTTTCCTTTTTGACTAGCCCCCACTCTAGAGGGCAAAGAGTA
CAAGAAACTCAACGACGTTTCGGGCACGTGGTCGTATATACCCTTACGAC
AGCTACAGGCTTTCAACGGGGAAGAGAGGAGGTGACGTGATTATTCCTGC
AGATAGTGCGAGGGCCAAGTCGTTGACTGCGTCGTGAGTGCATCGTGCGC
TTGCGTCCCTATTCTTGTGTGCTGCATCCCACATTGATTTGGTGTGTAGG
TAACGGTGGAGACGAGAGTACAGATGCTCGTTACTGGTTTCGTTTGTGTC
GGTTCGTTTTGGTTGTGCATTTCCGTTGCCGCCGAAGTGTTGGGACGTTC
CATCTGGTCCTCCAACGCAAGGTTGCTTTCGGGGATGGGAGTGAAGGTCG
GTTGTGGCTGCGATTTTTTTTGTTTTGCGCACGTGCGTACCTTTCCCTCC
GCTCATGTGTGGGAGTGGATCATGGCCGAGGTTTCCTTTCATTTTTTTTT
TACTTTTTGGTGCGTTTTCCCGACTTTATCTTAAGCGTGGGGTGTCGGGG
GTGGGGGAGAAAGAATGGACAGGATACCGACCGTGGTACAAATGGGCGAC
TTATGTCGGAGGCGGCCCTTAATTTCTTCCCGGTCCTGTCGTGCAGGAGA
CCTAGCGGCAGTACCGCGTCGGTGATGCGTCCGGCGCCCCCATCAAGGAA
GGAAGGGAGCGAGGAAGGGAGGGAGGGATGAAGAGAGGACGGGGGGCCAC
AATCGCGTTTGATTTGGCAAATGGTGGCTATTTCCTCACTTACAATTGGC
GAGGCACGCGAGAAAATGCTTTACGCCACACGCCAACGCCAGCGGTGTGG
GGGGCAAGGACGTGGGGGAGGAGGAGGGACCCGCGGAGAAGCGGCGCGGT
GTGAATGTGTGTGTGTGGTCGGGTGTCAGAGTCGCGCGTGACCTTTCGGC
TCTGCCCTTCACCCTGGAGAGCGGATATCGAGGGCTGGGCGGAGGGCGGA
AGAGGTGTGCGATCTGTGTGTAGAATGTGTGCAGCCCATTACTTCCCCCG
TGCGCGGCAGGGGTTTTGGTAGTGTTGTGTCCCACGGCTGTGGTTGTTTG
AGAAAAGGGCTGCGCTCGTCTTGGAGGGAGCTGAGTGAGTTTTGAGGAGT
GGCGAGGGGGAGACTTGGAGGGGGCAATAATGCTACTTCTTTCCCTCCGG
GCGTGTTCGTGTAGGCGGCTGCTCTGGTGCGAGAACTGTTTTGTTTGGTT
GGTGGGATCGCGCACGCGAAAACCCTTTGTATTGCGGCATTTTTTTTACA
CTGGATACATTTGATACTGGATACATGTGACTGAAATAGTCTTGCCTCAT
TTTGGCGGAAATGGCCTCCCGACCCAATGCACTCGTTGTTTGGAGTGCAA
AGTCGACGTATCAAAGTAGGAACACCCCTTCCCCTCCCCTCGTCAGGCAG
GGAGGGAGTGCATGGTGCCCCGCACAGCTTTTTTACAGAGAAATCTCCGT
GCGCAAATGTGTTTTGCTGAGGAAAAGGTACACCTCGAGGGCCCTGGAAA
TCAGATTAGTTCAACTCTCTCGCGAATTCGGTGTTCGGTGAGGTAGCGCC
GAAAATCGTGCGAGGGATACATCCCTGCGTTAGGTGCTGTACGGTACCAA
TCTAATATTTCCACGACTTTACACATGCATGTCGCGTCCAGTAAACGTTT
TGAAGACGTGGGGGTAATGTGGCGAGGGTGAGGCTAAGCGATCGCCCGAA
GCCTGCCCGCTGCGCGACATTTGCGCGGTTTTCGTATACAGAAGTTTCGA
GAAGACGGGAGGGGTCTCCTCGTCTCTTCGTGTGATTGGTAGATCGGTCT
AAAATCTAGCTCATCATCAGTACCGCGCCGGCTGCAGCCGAATGGGCGGA
CTCCCTTCACGGCTTGAGCAATCGCCCCCAGCCCCTCCCTCCTCGTTCAT
TTCGAGTACGATCGTAGGTTTTACTTGGGGCGGAGGGGGGTGGAAAAGGA
AGGAGCCGGGGGGTGCAGCATCTCAGTCGGGAAGGGATGCCGAGAGAGAT
GGTGGAGCGAACATATTATTGATGTGTAAAACGACGTGCAGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig69:640382..645723-

>mRNA_P-fluviatile_contig69.13432.1 ID=mRNA_P-fluviatile_contig69.13432.1|Name=mRNA_P-fluviatile_contig69.13432.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1566bp|location=Sequence derived from alignment at P-fluviatile_contig69:640382..645723- (Porterinema fluviatile SAG_2381)
ATGCAGGCGCAAGTGATGATGGTCCCCGCCGGGGGGTCATGGATGGCGTA
CGTGGACAACCACGGTCGGCCTTGCTGATGCAGGCGCAAGTGATGATGGT
CCCCGCCGGGGGGTCATGGATGGCGTACGTGGACAACCACGGTCGGCCTT
GCTGGCGCAACACCGCAACAAATGAGTGGACCTACAGCAACCCCGGCTTC
GCGCCGGGATTGCCACCTCAGCAACAACAGATGATTTTCGGCTACCCTGG
AGGGGTGTACGGCTGGCCAACGGCGATGGCGCCGGCGGCCACGGTGCCCC
CTCCAGGTTCGTACTTCTACGGCCCCGGCGGCACACCCCATCAACAGCAG
GTAATGTACATGCAGCCGATGATGCAGCATCCGCAGCATCCGCAGCAGCA
GGTGATGATGATGATGCCGGAGTACCCTCAGCAGCCGCAGCAGTACCAGA
TGATGATGTTTCCGGAATCGGCGGCGGCAGTCGGAGCCGCCACCGCTGCT
CCCCAAGAAGTCCCTCACGGCGACATGATGCCCGACCCCAACGGCCCGGA
CGCGGCGGCGTGGTTCAGCGGCCCCGGGCCCGCCTACATGCCGTACCCCA
GCAGTCACGAGGACAAGGGGGAGTTCCCTGTGTCATTCGAAGCGGCCGAC
ATGATGCCGGAATGGCTCGGCGACGCGGCCGAGGTGGCGTTCGCCGGGGT
GGCCGCCGGGAAGGCCGCCGGCAGCGCGAACGGTCTCGCTGGGATCTACG
GTAAGGCGAAGAAGATGGGTGCGCAACACCGCAACAAATGAGTGGACCTA
CAGCAACCCCGGCTTCGCGCCGGGATTGCCACCTCAGCAACAACAGATGA
TTTTCGGCTACCCTGGAGGGGTGTACGGCTGGCCAACGGCGATGGCGCCG
GCGGCCACGGTGCCCCCTCCAGGTTCGTACTTCTACGGCCCCGGCGGCAC
ACCCCATCAACAGCAGGTAATGTACATGCAGCCGATGATGCAGCATCCGC
AGCATCCGCAGCAGCAGGTGATGATGATGATGCCGGAGTACCCTCAGCAG
CCGCAGCAGTACCAGATGATGATGTTTCCGGAATCGGCGGCGGCAGTCGG
AGCCGCCACCGCTGCTCCCCAAGAAGTCCCTCACGGCGACATGATGCCCG
ACCCCAACGGCCCGGACGCGGCGGCGTGGTTCAGCGGCCCCGGGCCCGCC
TACATGCCGTACCCCAGCAGTCACGAGGACAAGGGGGAGTTCCCTGTGTC
ATTCGAAGCGGCCGACATGATGCCGGAATGGCTCGGCGACGCGGCCGAGG
TGGCGTTCGCCGGGGTGGCCGCCGGGAAGGCCGCCGGCAGCGCGAACGGT
CTCGCTGGGATCTACGGTAAGGCGAAGAAGATGGGTCGACGACAACGACA
ACGGCTCGAAGTCGAAGAGCTTGGGAGAGGAGGAGGAGGACAAAGACCCG
ACCGCACCGCCGACGGTGACCGATGACGACGACAACGACAACGGCTCGAA
GTCGAAGAGCTTGGGAGAGGAGGAGGAGGACAAAGACCCGACCGCACCGC
CGACGGTGACCGATGA
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