mRNA_P-fluviatile_contig69.13404.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig69.13404.1
Unique NamemRNA_P-fluviatile_contig69.13404.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig69.13404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig69contigP-fluviatile_contig69:305677..306334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size659
Cds size450
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817098.9943557-UTR-P-fluviatile_contig69:305676..3058841622817098.9943557-UTR-P-fluviatile_contig69:305676..305884Porterinema fluviatile SAG_2381UTRP-fluviatile_contig69 305677..305884 +
1693571094.8471217-UTR-P-fluviatile_contig69:305676..3058841693571094.8471217-UTR-P-fluviatile_contig69:305676..305884Porterinema fluviatile SAG_2381UTRP-fluviatile_contig69 305677..305884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817099.0038648-CDS-P-fluviatile_contig69:305884..3063341622817099.0038648-CDS-P-fluviatile_contig69:305884..306334Porterinema fluviatile SAG_2381CDSP-fluviatile_contig69 305885..306334 +
1693571094.8559074-CDS-P-fluviatile_contig69:305884..3063341693571094.8559074-CDS-P-fluviatile_contig69:305884..306334Porterinema fluviatile SAG_2381CDSP-fluviatile_contig69 305885..306334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig69.13404.1prot_P-fluviatile_contig69.13404.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig69 305885..306334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig69.13404.1

>prot_P-fluviatile_contig69.13404.1 ID=prot_P-fluviatile_contig69.13404.1|Name=mRNA_P-fluviatile_contig69.13404.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=150bp
MKHINGTYLTVTAPLNPARCCKNTNNAGARTQTNYPQTTESVRPKIILNS
PRQLDKRTHVYVEHKLDKNGLPGSCQKSANPARQCTKSPDLYKTELGLKP
LRETSRRDIEAGKSNTTLEPTRLMRRTNAPMFSVERKLTVMAPQAPARCC
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mRNA from alignment at P-fluviatile_contig69:305677..306334+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig69.13404.1 ID=mRNA_P-fluviatile_contig69.13404.1|Name=mRNA_P-fluviatile_contig69.13404.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=658bp|location=Sequence derived from alignment at P-fluviatile_contig69:305677..306334+ (Porterinema fluviatile SAG_2381)
GGGCCCTGTTTCGCCGTCCACAAAACTTCGCGGTGTTTGTGTAAACCCCT
CAAACAGGCGCATGCTTTATAAGATTTGACGACGCCAAGGATGATTCGTT
GCTTGTACAAAACGGCGAACGGTGACCACTCGTGCCAAGAGAGGCACATG
AAAGACTGAGAAATTAACACCGTGGGACTGAACAAAAAAACGCAAACAGC
AACAGTGCATGAAGCACATAAACGGGACATACCTTACAGTGACGGCGCCC
CTGAATCCTGCCAGATGTTGCAAAAATACCAATAACGCCGGTGCCCGGAC
CCAAACAAACTACCCACAAACTACAGAAAGTGTAAGGCCGAAAATAATCT
TAAATTCACCTCGACAACTGGACAAACGGACGCATGTGTATGTAGAACAC
AAACTGGACAAGAACGGCTTGCCCGGCTCCTGCCAGAAGTCGGCCAACCC
GGCGCGCCAATGCACAAAAAGCCCCGATCTGTACAAAACCGAACTCGGAC
TCAAACCATTACGTGAAACATCGCGGAGAGATATCGAGGCCGGGAAAAGC
AACACTACATTAGAGCCAACTAGGTTGATGAGACGGACAAACGCGCCCAT
GTTCTCCGTAGAACGCAAACTCACAGTGATGGCTCCCCAGGCTCCTGCCA
GATGTTGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig69:305677..306334+

>mRNA_P-fluviatile_contig69.13404.1 ID=mRNA_P-fluviatile_contig69.13404.1|Name=mRNA_P-fluviatile_contig69.13404.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=900bp|location=Sequence derived from alignment at P-fluviatile_contig69:305677..306334+ (Porterinema fluviatile SAG_2381)
ATGAAGCACATAAACGGGACATACCTTACAGTGACGGCGCCCCTGAATCC
TGCCAGATGTTGCAAAAATACCAATAACGCCGGTGCCCGGACCCAAACAA
ACTACCCACAAACTACAGAAAGTGTAAGGCCGAAAATAATCTTAAATTCA
CCTCGACAACTGGACAAACGGACGCATGTGTATGTAGAACACAAACTGGA
CAAGAACGGCTTGCCCGGCTCCTGCCAGAAGTCGGCCAACCCGGCGCGCC
AATGCACAAAAAGCCCCGATCTGTACAAAACCGAACTCGGACTCAAACCA
TTACGTGAAACATCGCGGAGAGATATCGAGGCCGGGAAAAGCAACACTAC
ATTAGAGCCAACTAGGTTGATGAGACGGACAAACGCGCCCATGTTCTCCG
TAGAACGCAAACTCACAGTGATGGCTCCCCAGGCTCCTGCCAGATGTTGC
ATGAAGCACATAAACGGGACATACCTTACAGTGACGGCGCCCCTGAATCC
TGCCAGATGTTGCAAAAATACCAATAACGCCGGTGCCCGGACCCAAACAA
ACTACCCACAAACTACAGAAAGTGTAAGGCCGAAAATAATCTTAAATTCA
CCTCGACAACTGGACAAACGGACGCATGTGTATGTAGAACACAAACTGGA
CAAGAACGGCTTGCCCGGCTCCTGCCAGAAGTCGGCCAACCCGGCGCGCC
AATGCACAAAAAGCCCCGATCTGTACAAAACCGAACTCGGACTCAAACCA
TTACGTGAAACATCGCGGAGAGATATCGAGGCCGGGAAAAGCAACACTAC
ATTAGAGCCAACTAGGTTGATGAGACGGACAAACGCGCCCATGTTCTCCG
TAGAACGCAAACTCACAGTGATGGCTCCCCAGGCTCCTGCCAGATGTTGC
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