mRNA_P-fluviatile_contig67.13280.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig67.13280.1
Unique NamemRNA_P-fluviatile_contig67.13280.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig67.13280.1 vs. uniprot
Match: A0A6H5KQJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQJ2_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 3.730e-32
Identity = 55/66 (83.33%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    1 MGIAWLYAGYPGLVKHGFAEKFEELSRLYPPSSSDVSKWTGAELVKMIGVLGLSKLEPALREQASL 198
            MGIAWLYAG+P LVK+G+AEKFEELSR YPPSSSDVSKWTG+EL+KMIG+LGLS LEPALREQ  L
Sbjct:    1 MGIAWLYAGHPALVKNGYAEKFEELSRQYPPSSSDVSKWTGSELMKMIGILGLSGLEPALREQEFL 66
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig67.13280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQJ2_9PHAE3.730e-3283.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig67contigP-fluviatile_contig67:455803..456560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionmonocarboxylate permease, putative
Ec32 orthologEc-03_003510.1
Exons2
Model size201
Cds size201
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817083.7299058-CDS-P-fluviatile_contig67:455802..4558891622817083.7299058-CDS-P-fluviatile_contig67:455802..455889Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 455803..455889 -
1693571055.748126-CDS-P-fluviatile_contig67:455802..4558891693571055.748126-CDS-P-fluviatile_contig67:455802..455889Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 455803..455889 -
1622817083.7402637-CDS-P-fluviatile_contig67:456446..4565601622817083.7402637-CDS-P-fluviatile_contig67:456446..456560Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 456447..456560 -
1693571055.7568007-CDS-P-fluviatile_contig67:456446..4565601693571055.7568007-CDS-P-fluviatile_contig67:456446..456560Porterinema fluviatile SAG_2381CDSP-fluviatile_contig67 456447..456560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig67.13280.1prot_P-fluviatile_contig67.13280.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig67 455803..456560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig67.13280.1

>prot_P-fluviatile_contig67.13280.1 ID=prot_P-fluviatile_contig67.13280.1|Name=mRNA_P-fluviatile_contig67.13280.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=67bp
MGIAWLYAGYPGLVKHGFAEKFEELSRLYPPSSSDVSKWTGAELVKMIGV
LGLSKLEPALREQASL*
back to top

mRNA from alignment at P-fluviatile_contig67:455803..456560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig67.13280.1 ID=mRNA_P-fluviatile_contig67.13280.1|Name=mRNA_P-fluviatile_contig67.13280.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=758bp|location=Sequence derived from alignment at P-fluviatile_contig67:455803..456560- (Porterinema fluviatile SAG_2381)
ATGGGCATAGCTTGGTTGTACGCTGGCTACCCTGGGCTTGTGAAACATGG
CTTCGCTGAAAAGTTCGAGGAGCTATCTCGCCTATACCCTCCATCATCGT
CGGATGTGTCAAAGGTGAAAGCTTTCAGTACACCAGGAGTCATCCCACGA
TTCCGACCAATTAGCGCGCATGCCTTGTATGATACCTAATGAAGATGGGC
GCACTCGCTTTGCTTAACTCCTGTGCGGCGCAGACGTAAGCCATGTAAAG
ACACCGTCTTGAATAGAAGGGTGCTGGCGGGACAATCGAAGTCAGGCAAG
ATAGGTTGAAGGAAATGGACATGCATGGGGGCACACGCCTGTAAGTAGGC
AACGTGAGCTTATTGATCGATGTATACAAGCAGTGATGGTGCGATCGGAG
GTACAGCATAAAGTACAATCATATTCGGCTCCGAGCGCAGACGAGGTGAA
CAACTTTTAGTTTGCACAGCTTAAGCCTGTCACACAGATAATGGAGGTTC
TTCCGAAGGGTGCCTCACACGGCCTATACCCGAGAATCAAAAAGGATTCA
TCACGAAAGCCAACCAGCGGTACTTTAGCTGCATCGCAACATTCATGAGT
TCGAGTTTCACACCTGTTACATTAAGCTGGTGGAACCCTGATCCACCGAT
CCTTCCGTTTCGTATCCACAGTGGACCGGAGCAGAACTCGTCAAGATGAT
CGGCGTCTTGGGCCTTTCAAAATTGGAGCCAGCCTTGAGGGAACAGGCGA
GTCTGTGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig67:455803..456560-

>mRNA_P-fluviatile_contig67.13280.1 ID=mRNA_P-fluviatile_contig67.13280.1|Name=mRNA_P-fluviatile_contig67.13280.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=402bp|location=Sequence derived from alignment at P-fluviatile_contig67:455803..456560- (Porterinema fluviatile SAG_2381)
ATGGGCATAGCTTGGTTGTACGCTGGCTACCCTGGGCTTGTGAAACATGG
CTTCGCTGAAAAGTTCGAGGAGCTATCTCGCCTATACCCTCCATCATCGT
CGGATGTGTCAAAGATGGGCATAGCTTGGTTGTACGCTGGCTACCCTGGG
CTTGTGAAACATGGCTTCGCTGAAAAGTTCGAGGAGCTATCTCGCCTATA
CCCTCCATCATCGTCGGATGTGTCAAAGTGGACCGGAGCAGAACTCGTCA
AGATGATCGGCGTCTTGGGCCTTTCAAAATTGGAGCCAGCCTTGAGGGAA
CAGGCGAGTCTGTGATGGACCGGAGCAGAACTCGTCAAGATGATCGGCGT
CTTGGGCCTTTCAAAATTGGAGCCAGCCTTGAGGGAACAGGCGAGTCTGT
GA
back to top